BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg334927
Length=831
Score E
Sequences producing significant alignments: (Bits) Value
AT1G16490.1 | Symbols: ATMYB58, MYB58 | myb domain protein 58 |... 1314 0.0
AT1G16489.1 | Symbols: | other RNA | chr1:5629216-5630488 FORW... 202 5e-51
> AT1G16490.1 | Symbols: ATMYB58, MYB58 | myb domain protein 58
| chr1:5629655-5630995 REVERSE LENGTH=1180
Length=1180
Score = 1314 bits (711), Expect = 0.0
Identities = 792/831 (95%), Gaps = 6/831 (1%)
Strand=Plus/Plus
Query 1 ATGGGCAAAGGAAGAGCACCATGTTGTGACAAAACCAAAGTGAAGAGAGGACCATGGAGC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 152 ATGGGCAAAGGAAGAGCACCATGTTGTGACAAAACCAAAGTGAAGAGAGGACCATGGAGC 211
Query 61 CAAGATGAAGACTTCAAACTCATCTCTTTCATTCACAAGTATGGTCATGAGAACTGGAGA 120
|| ||||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 212 CATGATGAAGACTTGAAACTCATCTCTTTCATTCACAAGAATGGTCATGAGAATTGGAGA 271
Query 121 TCTCTCCCAAAGCAAGCTGGATTGTTGAGGTGTGGCAAGAGTTGTCGTCTACGATGGATT 180
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 272 TCTCTCCCAAAGCAAGCTGGATTGTTGAGGTGTGGCAAGAGTTGTCGTCTGCGATGGATT 331
Query 181 AATTACCTCAGACCTGATGTGAAACGTGGCAATTTCACCGCAGAGGAAGAAGAAACCATC 240
||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 332 AATTACCTCAGACCTGATGTGAAACGTGGCAATTTCAGTGCAGAGGAAGAAGACACCATC 391
Query 241 ATTAAACTTCACCAGAGCTTTGGTAACAAGTGGTCGAAGATTGCTTCTAAACTTCCGGGA 300
|| ||||||||||||||||||||||||||||||||||||||||||||||| || || |||
Sbjct 392 ATCAAACTTCACCAGAGCTTTGGTAACAAGTGGTCGAAGATTGCTTCTAAGCTGCCTGGA 451
Query 301 AGAACAGACAATGAGATCAAGAATGTGTGGCATACACATCTCAAGAAAAGATTGAGCTCA 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 452 AGAACAGACAATGAGATCAAGAATGTGTGGCATACACATCTCAAGAAAAGATTGAGCTCG 511
Query 361 AAAACTAACCTTAATGTCGATGAAGCGGCTTCAAAAGGTTCTTTGAACGAAGAAGAGAAC 420
||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 512 GAAACTAACCTTAATGCCGATGAAGCGGGTTCAAAAGGTTCTTTGAATGAAGAAGAGAAC 571
Query 421 TCTCAAGAGTCATCTCCAAATGCTTCAATGTCTTTTGCTGGTTCCAACATTTCAAGCAAA 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 572 TCTCAAGAGTCATCTCCAAATGCTTCAATGTCTTTTGCTGGTTCCAACATTTCAAGCAAA 631
Query 481 GACGATGATGCACAGATAAGTCAAAAAACGTTTGAGCATATTCTAACTTTTAGCGACTTT 540
||||||||||||||||||||||||| ||||||||| |||||||||| |||||| |||
Sbjct 632 GACGATGATGCACAGATAAGTCAAAT---GTTTGAGCACATTCTAACTTATAGCGAGTTT 688
Query 541 ACGGAGATGCTACAAGAGGTAGACAAACCAGAGCTCCTGGAGATGACTTTTGATATAGAT 600
|||| |||| ||||||||||||||||||||||||| ||||||||| |||||||| |||||
Sbjct 689 ACGGGGATGTTACAAGAGGTAGACAAACCAGAGCTGCTGGAGATGCCTTTTGATTTAGAT 748
Query 601 CCAGACATCTGGAGTTTCATAGATGGTTCAGACTCATCATTCCAACAACCTGAGAACAGA 660
|| ||||| |||||||||||||||||||||||||||| | ||||||||| |||||||||
Sbjct 749 CCTGACATTTGGAGTTTCATAGATGGTTCAGACTCAT--T-CCAACAACCAGAGAACAGA 805
Query 661 GCTCTTCAAGAGTCTGAAGAAGATGAAGTTGATAAATGGTTCAAGCACCTGGAATGCGAA 720
||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 806 GCTCTTCAAGAGTCTGAAGAAGATGAAGTTGATAAATGGTTTAAGCACCTGGAAAGCGAA 865
Query 721 CTCGGGTTAGAAGAAAACGATAACcaacaacaacaacaacaGCATAAACAGGGAACAGAA 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 866 CTCGGGTTAGAAGAAAACGATAACCAACAACAACAACAACAGCATAAACAGGGAACAGAA 925
Query 781 GATGAAAATTCATCATCACTCTTGGAGAGTTACGAGCTCCTGATACATTAA 831
|||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 926 GATGAACATTCATCATCACTCTTGGAGAGTTACGAGCTCCTCATACATTAA 976
> AT1G16489.1 | Symbols: | other RNA | chr1:5629216-5630488 FORWARD
LENGTH=412
Length=412
Score = 202 bits (109), Expect = 5e-51
Identities = 131/141 (93%), Gaps = 3/141 (2%)
Strand=Plus/Minus
Query 569 CAGAGCTCCTGGAGATGACTTTTGATATAGATCCAGACATCTGGAGTTTCATAGATGGTT 628
||||||| ||||||||| |||||||| ||||||| ||||| |||||||||||||||||||
Sbjct 224 CAGAGCTGCTGGAGATGCCTTTTGATTTAGATCCTGACATTTGGAGTTTCATAGATGGTT 165
Query 629 CAGACTCATCATTCCAACAACCTGAGAACAGAGCTCTTCAAGAGTCTGAAGAAGATGAAG 688
|||| | |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 164 CAGA--C-TCATTCCAACAACCAGAGAACAGAGCTCTTCAAGAGTCTGAAGAAGATGAAG 108
Query 689 TTGATAAATGGTTCAAGCACC 709
||||||||||||| |||||||
Sbjct 107 TTGATAAATGGTTTAAGCACC 87
Score = 150 bits (81), Expect = 2e-35
Identities = 87/90 (97%), Gaps = 0/90 (0%)
Strand=Plus/Minus
Query 369 CCTTAATGTCGATGAAGCGGCTTCAAAAGGTTCTTTGAACGAAGAAGAGAACTCTCAAGA 428
|||||||| ||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 313 CCTTAATGCCGATGAAGCGGGTTCAAAAGGTTCTTTGAATGAAGAAGAGAACTCTCAAGA 254
Query 429 GTCATCTCCAAATGCTTCAATGTCTTTTGC 458
||||||||||||||||||||||||||||||
Sbjct 253 GTCATCTCCAAATGCTTCAATGTCTTTTGC 224
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40488722482
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5