BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg334934

Length=324
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G16600.1 | Symbols:  | pseudogene, putative cycloartenol syn...   152    2e-36


> AT1G16600.1 | Symbols:  | pseudogene, putative cycloartenol synthase 
| chr1:5675169-5675433 FORWARD LENGTH=265
Length=265

 Score =  152 bits (82),  Expect = 2e-36
 Identities = 87/89 (98%), Gaps = 1/89 (1%)
 Strand=Plus/Plus

Query  229  CAGGAAATGACAGGAGTGTTCATGAAGAACTGTTTTTCTAAACTACGTTACCTACAGAAA  288
            |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct  134  CAGGAAATGACAGGAGTGTTCATGAAGAACTGTTTT-CTAAACTATGTTACCTACAGAAA  192

Query  289  CATCTTCCCCATATGGGCACTTGCAGAGT  317
            |||||||||||||||||||||||||||||
Sbjct  193  CATCTTCCCCATATGGGCACTTGCAGAGT  221


 Score = 84.2 bits (45),  Expect = 7e-16
 Identities = 45/45 (100%), Gaps = 0/45 (0%)
 Strand=Plus/Plus

Query  186  ACTAATCATCAATTTACAATTAGAAAACGGAGATTATCCTCAACA  230
            |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ACTAATCATCAATTTACAATTAGAAAACGGAGATTATCCTCAACA  45



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15080324700


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5