BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg334946
Length=624
Score E
Sequences producing significant alignments: (Bits) Value
AT1G16730.1 | Symbols: UP6 | unknown protein 6 | chr1:5726368-5... 839 0.0
> AT1G16730.1 | Symbols: UP6 | unknown protein 6 | chr1:5726368-5727312
REVERSE LENGTH=858
Length=858
Score = 839 bits (454), Expect = 0.0
Identities = 570/624 (91%), Gaps = 15/624 (2%)
Strand=Plus/Plus
Query 1 ATGGAAAATCATCACCGAACCTCCGCCACAAAATCCGACGGCGAAGCAGTGTCGGACGGT 60
||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||| |
Sbjct 1 ATGGAAAATCATCACCGAATATCCGCCACAAAATACAACGGCGAAGCAGTGTCGGACGAT 60
Query 61 GTGGGCCAGGGGAAGCTATATTCTCCGAACCACGCGATCAAAATCGCTCCAAAATCCGAC 120
|||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||||
Sbjct 61 GTGGGCCAGGGGAAGCTATATTCTCCAAACCACGCGATCAAAATCTCTCCAGAATCCGAC 120
Query 121 GAAAACGTGGGCCAAGGGAACCTCTACTCTCCTGACCACGCGATCAAAATCGCAACGAAC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GAAAACGTGGGCCAAGGGAACCTCTACTCTCCTGACCACGCGATCAAAATCGCAACGAAC 180
Query 181 CCTAATTCTGTGGATTCATCATCAGAGGAAGAAGAAGGGGAGAAACAGAGGAAGACGATG 240
||| |||| |||||||| |||||||||||||||||||| ||||| ||||||||||||||
Sbjct 181 CCTGATTCCGTGGATTCCTCATCAGAGGAAGAAGAAGGAGAGAAGCAGAGGAAGACGATC 240
Query 241 ATGTTGGGGCTGAAGAATCTTGCATCTGTTAAGGATAAAGTTTTGGAGAAACTAGCGGCT 300
||||||||||||||||||||||| | |||||||||||||| || || |||||| |||||
Sbjct 241 ATGTTGGGGCTGAAGAATCTTGCGGCGGTTAAGGATAAAGTGTTAGAAAAACTATCGGCT 300
Query 301 GCTTCGGTTCCATCGGAGTCGCTTGAAAACGCGAAACAGTTTTTGGAAGGTGCGATTAAG 360
|||||||||||||| ||||||||||||||||| ||||||||||||||||| || ||||||
Sbjct 301 GCTTCGGTTCCATCTGAGTCGCTTGAAAACGCTAAACAGTTTTTGGAAGGAGCCATTAAG 360
Query 361 GATTTCGCTGGAGCGGCGCAGGGTATGACGAAAGACGCCTTGCACCGAATTAAAACTCAT 420
|||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 361 GATTTCGCCGGAGCGGCGCAGGGTATGACGAAAGACGCGTTGCACCGGATTAAAACTCAG 420
Query 421 CTCGCTGTTATTGTTCCGTCTGTTTCTCCTGCTGTCACCGGAAAGATAGTGGACGATGCT 480
|||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 421 CTCGCTGTTATTGTTCCGTCTGTTTCTCCTGCCGTCACCGAAAAGATAGTGGACGATGCT 480
Query 481 GAGAAAGAAGCCACTAACGGAGAGGAAGAAGATGAGAGCAAGTCAAAAGAAAGCTTCGGA 540
||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |
Sbjct 481 GAGAAAGAAGCCATTGACGGAGAGGAAGAAGATGAGAGCAAGTCAAAAGAAAGCT-C--- 536
Query 541 GACGAAGTCGCCGAAAAGTTGCCGTATGTGTCTCCGACGTCTTCATTTTTCGGCTCTCTC 600
|| | ||| |||||||| ||| |||||||| ||||| |||||| ||||||||
Sbjct 537 --CG--G------AAA-GTTGCCGTTTGTTTCTCCGACATCTTCGTTTTTCAGCTCTCTC 585
Query 601 GCCAAACCTTTCTCGAAGCTTTGA 624
|||||||||||||| |||||||||
Sbjct 586 GCCAAACCTTTCTCCAAGCTTTGA 609
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30090254053
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5