BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg334969
Length=1506
Score E
Sequences producing significant alignments: (Bits) Value
AT1G17030.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 2468 0.0
> AT1G17030.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT2G47010.2); Has
70 Blast hits to 70 proteins in 13 species: Archae - 0; Bacteria
- 0; Metazoa - 0; Fungi - 0; Plants - 69; Viruses - 0;
Other Eukaryotes - 1 (source: NCBI BLink). | chr1:5822368-5824455
FORWARD LENGTH=1659
Length=1659
Score = 2468 bits (1336), Expect = 0.0
Identities = 1454/1511 (96%), Gaps = 7/1511 (0%)
Strand=Plus/Plus
Query 1 ATGGAGAAAAGTGTCAATGGATCATGCAGACTCATCAAGAGACTTGTGATTATACTTTCT 60
|||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 120 ATGGAGAAAAGTATCAATGGATCATGCAGACTCATCAAGAGACTCGTGATTATACTTTCT 179
Query 61 TGTCTTTCATATTCCTTTGTTCGATCAGACTTTACAGAGACAACAAATATCAATTATGTA 120
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 180 TGTCTTTCATATTCCTTTGTTCGATCAGACTTTACAGAGAGAACAAATATCAATTATGTA 239
Query 121 TCAGCTTTGGGAGATCCCGGGATGAGAAACGATAACTTAAGGGTGGCTATAGAAGCTTGG 180
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TCAGCTGTGGGAGATCCCGGGATGAGAAACGATAACTTAAGGGTGGCTATAGAAGCTTGG 299
Query 181 AACCAATGCAACGAGGTCGGTGAAGAAGCTACAAACATGGGAAGCCCTCGAATGGCAGAT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 AACCAATGCAACGAGGTCGGTGAAGAAGCTACAAACATGGGAAGCCCTCGAATGGCAGAT 359
Query 241 TGCTTCGATATCGATAACTCTAGCTTGCCCGTGAAGATAATCCACAAAGTCGACGAAAGA 300
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 360 TGCTTCGATATCGATAACTCTAGCTTTCCCGTGAAGATAATCCACAAAGTCGACGAAAGA 419
Query 301 GACAACAGGCTTGGGGTAGGCAACGGAACCTACGGAGGAATAAGCGCTGGAGACAACGTA 360
|||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |
Sbjct 420 GACAACAGGCTTGGGGTAGGAAATGGAACCTACGGAGGAATAAGCGCTGGAGACAACGCA 479
Query 361 GATATCTACGCTGCACAAAAGGAGATATACTTAGGAAACAAATGTCAAGTTATGGACAAG 420
||||||||||| || ||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 480 GATATCTACGCAGCGCAAAAGGAGGTATACTTAGGAAACAAATGTCAAGTTGTGGACAAG 539
Query 421 CCAAATCCATGGCAGTTTTGGATGATAATGCTGAAGAACGGTAATACGGACACTTTAGCC 480
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 540 CCAAATCCATGGCAGTTTTGGATGATAATGCTAAAGAACGGTAATACGGATACTTTAGCC 599
Query 481 GCGATTTGTCCCGAAAACGGAAAAAAGGCGAAACCATTTCCTCAGACCGGGAGGTTTCCA 540
|| ||||||||||||||||| |||||||||||||||||||||| || ||||||||||||
Sbjct 600 GCAATTTGTCCCGAAAACGGGAAAAAGGCGAAACCATTTCCTCCTACGGGGAGGTTTCCA 659
Query 541 TGTTTTGGGAAAGGATGTATGAACATGCCATCGATGCATCATGAGTACACAAGCTTTGTT 600
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 660 TGTTTTGGGAAAGGATGTATGAACATGCCATCGATGCATCATGAGTACACAAGCTTGGTT 719
Query 601 GAT-A--AAGAAGGACATATGAGTGGGAGTTTCTATGGGACTTGGGACTTGGATAATGAC 657
||| | ||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 720 GATAACGAAGAAGGACATATGAGTGGGAGTTTTTATGGGACTTGGGACTTGGATAACGAC 779
Query 658 CATAAAGATCCGGTTGGTAATAATTCGTATTATAAAGTGAAATGGGAGAAGAAGATTGGG 717
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 780 CAAAAAGATCCGGTTGGTAATAATTCGTATTATAAGGTGAAATGGGAGAAGAAGATTGGG 839
Query 718 GGAAATGAGAGTTGGGTTTTTCATCATTTGTTGAAGACTTCTTCTAAGTATCCATGGTTG 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 GGAAATGAGAGTTGGGTTTTTCATCATTTGTTGAAGACTTCTTCTAAGTATCCATGGTTG 899
Query 778 ATGCTTTATCTACGAGCTGATGCTTCTCGAGGTTTCTCTGGTGGTTATCATTACGGCACT 837
|||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 900 ATGCTTTATCTACGCGCTGATGCTTCTCGAGGTTTCTCTGGTGGTTATCATTACGACACT 959
Query 838 AGAGGGATGATGAAGATGACGCTGGAATCGCCGA-ATTTCAAAGTTAGATTCAAGCTAGA 896
||||||||||||||||||||||| ||||||| | |||| ||||| | ||||||||||||
Sbjct 960 AGAGGGATGATGAAGATGACGCTAAAATCGCC-AGATTTTAAAGTAAAATTCAAGCTAGA 1018
Query 897 GATTCTAAAAGGAGGCGGTTCAGGGAGCCAATTTTACCTAATGGACATGGGAAGTTGCTG 956
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 GATTATTAAAGGAGGCGGTTCAGGGAGCCAATTTTACCTAATGGACATGGGAAGTTGCTG 1078
Query 957 GAAGAACGACGGAAGAGACTGCGACGGCGACGTCACAACCGACGTTACAAGGTACAGCGA 1016
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 GAAAAACGACGGAAGAGACTGCGACGGCGACGTCACAACCGACGTTACAAGGTACAGCGA 1138
Query 1017 AATGATAATCAACCCCGGGTCAACCGCCGTTTGCAACCGCAACCGCCTAGGCGCTTGTCC 1076
||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 1139 AATGATAATCAACCCGGGGGCAACCGCCGTTTGCACCCGCAACCGCCTAGGCGCTTGTCC 1198
Query 1077 GCC-GCAACACACGTTTCCAAACGGGACTAAAGTTCACAGGACGGACAAAGAGAAGTTCC 1135
||| | | || || ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1199 GCCAG-AGCATACTTTTCCAAACGGGACTAAAGTTCACAGGACGGACAAGGAGAAGTTCC 1257
Query 1136 CTTACGAAGCGTATCACTATTACTGCGTTCCGGGAAACGCGCGTTTTGCGGAATCCCCGT 1195
||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1258 CTTTCGAAGCGTATCACTATTACTGCGTTCCGGGAAACGCGCGTTTTGCGGAATCTCCGT 1317
Query 1196 ACGAGGTTTGTGATCCGTACAGTAATCCACAACCGCAGGAGATTCTGCAGATCTTGCCTC 1255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1318 ACGAGGTTTGTGATCCGTACAGTAATCCACAACCGCAGGAGATTCTGCAGATCTTGCCTC 1377
Query 1256 ATCCAGTGTGGGAACAGTTTGGGTATCCGACAAAGAAAGGACAAGGTTGGATTGGAGATC 1315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1378 ATCCAGTGTGGGAACAGTTTGGGTATCCGACAAAGAAAGGACAAGGTTGGATTGGAGATC 1437
Query 1316 CAAGAACTTGGGAACTTGATGTCGGAAAACTCTCTCAATCACTCTACTTTTATCAGGATC 1375
||||||||||||||||||||||||||||||||||||| ||||||| |||||| |||||||
Sbjct 1438 CAAGAACTTGGGAACTTGATGTCGGAAAACTCTCTCAGTCACTCTTCTTTTACCAGGATC 1497
Query 1376 CAGGGACGAAGCCGGTGGAGAGACATTGGTCGTCGATAGACTTAGGAACTGAAATATATA 1435
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1498 CAGGGACGAAACCGGTGGAGAGACATTGGTCGTCGATAGATTTAGGAACTGAAATATATA 1557
Query 1436 TGAGCAAGAATCAAATTGCTGAATGGACTGTAACTGATTTCGACATTGTTATACCAAAAG 1495
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1558 TGAGTAAGAATCAAATTGCTGAATGGACTGTAACTGATTTCGACATTGTTATACCAAATG 1617
Query 1496 CCGATATTTAA 1506
|||||||||||
Sbjct 1618 CCGATATTTAA 1628
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74296806600
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5