BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg334969 Length=1506 Score E Sequences producing significant alignments: (Bits) Value AT1G17030.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 2468 0.0 > AT1G17030.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G47010.2); Has 70 Blast hits to 70 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 69; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr1:5822368-5824455 FORWARD LENGTH=1659 Length=1659 Score = 2468 bits (1336), Expect = 0.0 Identities = 1454/1511 (96%), Gaps = 7/1511 (0%) Strand=Plus/Plus Query 1 ATGGAGAAAAGTGTCAATGGATCATGCAGACTCATCAAGAGACTTGTGATTATACTTTCT 60 |||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 120 ATGGAGAAAAGTATCAATGGATCATGCAGACTCATCAAGAGACTCGTGATTATACTTTCT 179 Query 61 TGTCTTTCATATTCCTTTGTTCGATCAGACTTTACAGAGACAACAAATATCAATTATGTA 120 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 180 TGTCTTTCATATTCCTTTGTTCGATCAGACTTTACAGAGAGAACAAATATCAATTATGTA 239 Query 121 TCAGCTTTGGGAGATCCCGGGATGAGAAACGATAACTTAAGGGTGGCTATAGAAGCTTGG 180 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 240 TCAGCTGTGGGAGATCCCGGGATGAGAAACGATAACTTAAGGGTGGCTATAGAAGCTTGG 299 Query 181 AACCAATGCAACGAGGTCGGTGAAGAAGCTACAAACATGGGAAGCCCTCGAATGGCAGAT 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 300 AACCAATGCAACGAGGTCGGTGAAGAAGCTACAAACATGGGAAGCCCTCGAATGGCAGAT 359 Query 241 TGCTTCGATATCGATAACTCTAGCTTGCCCGTGAAGATAATCCACAAAGTCGACGAAAGA 300 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 360 TGCTTCGATATCGATAACTCTAGCTTTCCCGTGAAGATAATCCACAAAGTCGACGAAAGA 419 Query 301 GACAACAGGCTTGGGGTAGGCAACGGAACCTACGGAGGAATAAGCGCTGGAGACAACGTA 360 |||||||||||||||||||| || |||||||||||||||||||||||||||||||||| | Sbjct 420 GACAACAGGCTTGGGGTAGGAAATGGAACCTACGGAGGAATAAGCGCTGGAGACAACGCA 479 Query 361 GATATCTACGCTGCACAAAAGGAGATATACTTAGGAAACAAATGTCAAGTTATGGACAAG 420 ||||||||||| || ||||||||| |||||||||||||||||||||||||| |||||||| Sbjct 480 GATATCTACGCAGCGCAAAAGGAGGTATACTTAGGAAACAAATGTCAAGTTGTGGACAAG 539 Query 421 CCAAATCCATGGCAGTTTTGGATGATAATGCTGAAGAACGGTAATACGGACACTTTAGCC 480 |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| Sbjct 540 CCAAATCCATGGCAGTTTTGGATGATAATGCTAAAGAACGGTAATACGGATACTTTAGCC 599 Query 481 GCGATTTGTCCCGAAAACGGAAAAAAGGCGAAACCATTTCCTCAGACCGGGAGGTTTCCA 540 || ||||||||||||||||| |||||||||||||||||||||| || |||||||||||| Sbjct 600 GCAATTTGTCCCGAAAACGGGAAAAAGGCGAAACCATTTCCTCCTACGGGGAGGTTTCCA 659 Query 541 TGTTTTGGGAAAGGATGTATGAACATGCCATCGATGCATCATGAGTACACAAGCTTTGTT 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 660 TGTTTTGGGAAAGGATGTATGAACATGCCATCGATGCATCATGAGTACACAAGCTTGGTT 719 Query 601 GAT-A--AAGAAGGACATATGAGTGGGAGTTTCTATGGGACTTGGGACTTGGATAATGAC 657 ||| | ||||||||||||||||||||||||| ||||||||||||||||||||||| ||| Sbjct 720 GATAACGAAGAAGGACATATGAGTGGGAGTTTTTATGGGACTTGGGACTTGGATAACGAC 779 Query 658 CATAAAGATCCGGTTGGTAATAATTCGTATTATAAAGTGAAATGGGAGAAGAAGATTGGG 717 || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 780 CAAAAAGATCCGGTTGGTAATAATTCGTATTATAAGGTGAAATGGGAGAAGAAGATTGGG 839 Query 718 GGAAATGAGAGTTGGGTTTTTCATCATTTGTTGAAGACTTCTTCTAAGTATCCATGGTTG 777 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 840 GGAAATGAGAGTTGGGTTTTTCATCATTTGTTGAAGACTTCTTCTAAGTATCCATGGTTG 899 Query 778 ATGCTTTATCTACGAGCTGATGCTTCTCGAGGTTTCTCTGGTGGTTATCATTACGGCACT 837 |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| Sbjct 900 ATGCTTTATCTACGCGCTGATGCTTCTCGAGGTTTCTCTGGTGGTTATCATTACGACACT 959 Query 838 AGAGGGATGATGAAGATGACGCTGGAATCGCCGA-ATTTCAAAGTTAGATTCAAGCTAGA 896 ||||||||||||||||||||||| ||||||| | |||| ||||| | |||||||||||| Sbjct 960 AGAGGGATGATGAAGATGACGCTAAAATCGCC-AGATTTTAAAGTAAAATTCAAGCTAGA 1018 Query 897 GATTCTAAAAGGAGGCGGTTCAGGGAGCCAATTTTACCTAATGGACATGGGAAGTTGCTG 956 |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1019 GATTATTAAAGGAGGCGGTTCAGGGAGCCAATTTTACCTAATGGACATGGGAAGTTGCTG 1078 Query 957 GAAGAACGACGGAAGAGACTGCGACGGCGACGTCACAACCGACGTTACAAGGTACAGCGA 1016 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1079 GAAAAACGACGGAAGAGACTGCGACGGCGACGTCACAACCGACGTTACAAGGTACAGCGA 1138 Query 1017 AATGATAATCAACCCCGGGTCAACCGCCGTTTGCAACCGCAACCGCCTAGGCGCTTGTCC 1076 ||||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||| Sbjct 1139 AATGATAATCAACCCGGGGGCAACCGCCGTTTGCACCCGCAACCGCCTAGGCGCTTGTCC 1198 Query 1077 GCC-GCAACACACGTTTCCAAACGGGACTAAAGTTCACAGGACGGACAAAGAGAAGTTCC 1135 ||| | | || || ||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1199 GCCAG-AGCATACTTTTCCAAACGGGACTAAAGTTCACAGGACGGACAAGGAGAAGTTCC 1257 Query 1136 CTTACGAAGCGTATCACTATTACTGCGTTCCGGGAAACGCGCGTTTTGCGGAATCCCCGT 1195 ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1258 CTTTCGAAGCGTATCACTATTACTGCGTTCCGGGAAACGCGCGTTTTGCGGAATCTCCGT 1317 Query 1196 ACGAGGTTTGTGATCCGTACAGTAATCCACAACCGCAGGAGATTCTGCAGATCTTGCCTC 1255 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1318 ACGAGGTTTGTGATCCGTACAGTAATCCACAACCGCAGGAGATTCTGCAGATCTTGCCTC 1377 Query 1256 ATCCAGTGTGGGAACAGTTTGGGTATCCGACAAAGAAAGGACAAGGTTGGATTGGAGATC 1315 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1378 ATCCAGTGTGGGAACAGTTTGGGTATCCGACAAAGAAAGGACAAGGTTGGATTGGAGATC 1437 Query 1316 CAAGAACTTGGGAACTTGATGTCGGAAAACTCTCTCAATCACTCTACTTTTATCAGGATC 1375 ||||||||||||||||||||||||||||||||||||| ||||||| |||||| ||||||| Sbjct 1438 CAAGAACTTGGGAACTTGATGTCGGAAAACTCTCTCAGTCACTCTTCTTTTACCAGGATC 1497 Query 1376 CAGGGACGAAGCCGGTGGAGAGACATTGGTCGTCGATAGACTTAGGAACTGAAATATATA 1435 |||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1498 CAGGGACGAAACCGGTGGAGAGACATTGGTCGTCGATAGATTTAGGAACTGAAATATATA 1557 Query 1436 TGAGCAAGAATCAAATTGCTGAATGGACTGTAACTGATTTCGACATTGTTATACCAAAAG 1495 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1558 TGAGTAAGAATCAAATTGCTGAATGGACTGTAACTGATTTCGACATTGTTATACCAAATG 1617 Query 1496 CCGATATTTAA 1506 ||||||||||| Sbjct 1618 CCGATATTTAA 1628 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 74296806600 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5