BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg335030
Length=1065
Score E
Sequences producing significant alignments: (Bits) Value
AT1G17640.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 1550 0.0
> AT1G17640.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:6067394-6069098 REVERSE LENGTH=1110
Length=1110
Score = 1550 bits (839), Expect = 0.0
Identities = 986/1053 (94%), Gaps = 26/1053 (2%)
Strand=Plus/Plus
Query 37 GAACAATTACAACCATCGGATTATGAAGTGGAGACCTTTGATGACCGGAGGAACGGTGGT 96
|||||||||| || |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 58 GAACAATTACCACAATCGGATTTTGAAGTGGAGACCTTTGATGACCGGAGGAACGGTGGT 117
Query 97 GCAGCCGTTGATACTGGTGGGATTCAGATGAAGCATTCCATTGAGCATCGTTATTCGTCT 156
||||||||||||||||||||||||||||||||||||||| |||| ||||| |||| |||
Sbjct 118 GCAGCCGTTGATACTGGTGGGATTCAGATGAAGCATTCCGTTGACCATCGCCATTCTTCT 177
Query 157 TCATCCATGTCTTCTCCTGGGAAACTATTCGTAGGTGGAGTTTCGTGGGAAACAACTGAA 216
|| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |
Sbjct 178 TCGTCCATGTCTTCTCCTGGGAAACTGTTCGTAGGTGGAGTTTCTTGGGAAACAACTGCA 237
Query 217 GAAACTTTTGCGAATTACTTTGGAAAGTTTGGAGAAGTTGTCGACTCTGTAATCATGACA 276
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 GAAACTTTTGCGAATTACTTTGGAAAGTTTGGAGAAGTTGTCGACTCTGTAATCATGACA 297
Query 277 GATAGAATAACTGGAAATCCAAGGGGATTTGGGTTTGTCACTTTTGCTGATTCAGCTGTT 336
|||||||||||||| || |||||||| |||||||||||||||||||||||||||||||||
Sbjct 298 GATAGAATAACTGGGAACCCAAGGGGGTTTGGGTTTGTCACTTTTGCTGATTCAGCTGTT 357
Query 337 GCAGAGAAAGTTTTGGAGGAAGAGCATGTAATAGATGAGCGGAAGGTTGATCTGAAAAGG 396
|| |||||||||||||||||||| |||||||||||||| || ||||||||||||||||||
Sbjct 358 GCTGAGAAAGTTTTGGAGGAAGATCATGTAATAGATGACCGAAAGGTTGATCTGAAAAGG 417
Query 397 ACAGTTCCTAGAGGGGACAGGGATACCGATATCAAAGCGGTATCAAAGACCAGGAAAATC 456
||| ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 418 ACACTTCCTAGAGGGGACAAGGATACTGATATCAAAGCGGTATCAAAGACCAGGAAAATC 477
Query 457 TTTGTTGGTGGACTTCCACCACTTTTGGAAGAAGAGGAACTGAAAAATTATTTCTGTGTA 516
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 478 TTTGTTGGTGGACTTCCACCACTTTTGGAAGAAGATGAACTGAAGAATTATTTCTGTGTA 537
Query 517 TATGGTGACATAATCGAGCATCAGATCATGTATGACCACCACACGGGAAGGTCGAGGGGA 576
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 538 TATGGTGACATAATTGAGCATCAGATCATGTATGACCACCACACGGGAAGGTCAAGGGGA 597
Query 577 TTTGGTTTTGTAACCTTTCAGACTGAAGATTCTGTTGACAGACTTTTCTCCGATGGAAAA 636
||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||
Sbjct 598 TTTGGTTTTGTAACCTTCCAGACCGAAGATTCTGTTGATAGACTTTTCTCCGATGGAAAA 657
Query 637 GT----G-G-------ACA------T--AAA-AA---GGGCCGAACCAAAGAGAACCGGG 672
|| | | ||| | ||| || |||||||||||||||||||||||
Sbjct 658 GTTCACGAGCTCGGTGACAAACAGGTGGAAATAAAAAGGGCCGAACCAAAGAGAACCGGG 717
Query 673 AGAGATAACAGCTTTCGATCCTATGGTGCTAGTGGCAAGTATGATCAGGAAGATTGTTAT 732
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 718 AGAGATAACAGCTTTCGATCCTATGGTGCTAGTGGCAAGTATGATCAGGAAGATAGTTAT 777
Query 733 GGTGGGAAAGCTAATGAAGATTACAATATGTATTCGGGTTATGGTGGTTATGGCGGTTAT 792
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 778 AGTGGGAAAGCTAATGAAGATTACAGTATGTATTCGGGTTATGGTGGTTATGGCGGTTAT 837
Query 793 GGAGCCTACGCAGGGAA-TCCCATGGTTAACGCTGCTGGATTTTATGGTTACGGTGGTGG 851
||||||||||||||||| ||| ||||||||| ||||||| ||||||||||| ||||||||
Sbjct 838 GGAGCCTACGCAGGGAACTCC-ATGGTTAACCCTGCTGGTTTTTATGGTTATGGTGGTGG 896
Query 852 GTATGGCTATGGTTATGGCTATGGAGGTCAAATGTTCAACATGGGCTATGGAGCTGGCGG 911
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 GTATGGCTATGGTTATGGCTATGGAGGTCAAATGTTCAACATGGGCTATGGAGCTGGCGG 956
Query 912 TTATAGCCATATGGGTGGTGGCTACGGTGTTGCTGCGGCTGCTGCTTATGGAGGTGGAAA 971
|||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 957 TTATAGCCATATGGGTAGTGGCTATGGTGTTGCTGCGGCTGCTGCTTATGGAGGTGGAAA 1016
Query 972 AGCTCATGGAAACGGAAACAGCGGCTCAAGTAGTGGCAAAGGAAATGGGACTAATGGTTC 1031
| |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 1017 ATCTCATGGAAACGGAAATAACGGCTCAAGTAGTGGCAAAGGAAATGGGACTAATGGTTC 1076
Query 1032 TGGGCCAGCTCGATACCATCCTTATCAAAAGTA 1064
|||||||| ||||||||||||||||||||||||
Sbjct 1077 TGGGCCAGATCGATACCATCCTTATCAAAAGTA 1109
Score = 67.6 bits (36), Expect = 2e-10
Identities = 36/36 (100%), Gaps = 0/36 (0%)
Strand=Plus/Plus
Query 1 ATGGATTATAACTCAGATCGTGGTTATGATGACTCT 36
||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGATTATAACTCAGATCGTGGTTATGATGACTCT 36
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52158366255
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5