BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg335111
Length=2181
Score E
Sequences producing significant alignments: (Bits) Value
AT1G18550.1 | Symbols: | ATP binding microtubule motor family ... 3504 0.0
> AT1G18550.1 | Symbols: | ATP binding microtubule motor family
protein | chr1:6381503-6384340 REVERSE LENGTH=2331
Length=2331
Score = 3504 bits (1897), Expect = 0.0
Identities = 2094/2188 (96%), Gaps = 17/2188 (1%)
Strand=Plus/Plus
Query 1 ATGCCGGTATCTACTCGATCCAAGGTGATGAAACAGGAGCGAAATGAGCAAGAAAACACA 60
|||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||
Sbjct 1 ATGCCGGTATCTACTCGATCTAAGGTGATGAAACAGGAGCGAAACGAGCAAGAGAACACA 60
Query 61 AATCTGAATCTTCCGTTGAGAAATCCACATCAAGGGTTGAAAGAAAAGATGAGAGCTTTG 120
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 61 AATCTGAATCTTCCGTTGAGAAATCCACATCAAGGGTTGAAGGAAAAGATGAGAGCTTTG 120
Query 121 ACTCTCTTGTACGAGCAGCAAAAGAGAGCCTCTTTCTCTCTCAGGAA-CC----C-TAAT 174
||||||||||||||||||||||||||||||||||||||||||||||| || | ||||
Sbjct 121 ACTCTCTTGTACGAGCAGCAAAAGAGAGCCTCTTTCTCTCTCAGGAACCCTAATCATAAT 180
Query 175 CAGTCTCCTAAACCCGAAGACCAGAGATTCAAGACTCAGCTGCTTGATTCTTGCAAGAAA 234
|||||||| ||||| ||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 181 CAGTCTCCGAAACCTGAAGATCAGAGATTCAAGACTCAGCTGCTTGATTCTTCCAAGAAA 240
Query 235 GGAGACAGATTTCATCGCCAAGACGGTAAAGATTCTAAATTTATTGAAGAAGAAACCAAA 294
||||||||||||||||||| |||||||||||||||| ||| |||||||||| ||||||
Sbjct 241 GGAGACAGATTTCATCGCCTGGACGGTAAAGATTCTACCTTTGTTGAAGAAGATACCAAA 300
Query 295 GAGAACAATGTATTCGAAGCAGATCGGATTTTCGGGGTTAATTCGGTTCCTGTTAAGCCT 354
|||||||||||||| ||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 301 GAGAACAATGTATTTGAAGCAGATCGGATTTTTGGGGTTAGTTCGGTTCCTGTTAAGCC- 359
Query 355 AGTAGTGGTGTGATTAGAAAGCTCTCAATGGGTATTGGAGCTAGAAACGTTACAGAAGCT 414
||||||||||||||| ||||| |||||||||| |||||||||||||||| | ||||||
Sbjct 360 --TAGTGGTGTGATTAGGAAGCTTTCAATGGGTAATGGAGCTAGAAACGTTTCGGAAGCT 417
Query 415 GAAAAATTGGATAGTCTTGATGCTTCTGTGAGTCGGATTTTGGTGTTTGTTAGGCTTAGA 474
|| |||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 418 GAGAAATTGGAGAGTCTTAATGCTTCTGTGAGTCGGATTTTGGTGTTTGTTAGGCTTAGA 477
Query 475 CCAATGGGGAAAAAGGAAAGAGAGAATGGGGCAAGATGTTGTGTCAAGATTTTGAATAAA 534
|||||||||||||||||||||||||||||| |||| |||||||||||| |||||||||||
Sbjct 478 CCAATGGGGAAAAAGGAAAGAGAGAATGGGTCAAGGTGTTGTGTCAAGGTTTTGAATAAA 537
Query 535 AGAGATGTTTATCTAACGGAGTTTACGAATGAGAACGATTACCTTAGGCTTAAGAGGCTC 594
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 538 AGAGATGTTTACCTAACGGAGTTTACGAATGAGAATGATTACCTTAGGCTTAAGAGGCTC 597
Query 595 CGTGTTCGTCATTTCACTTTTGATTCTTCATTTCCTGAAACTACAACACAACAAGAGGTT 654
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 598 CGTGTTCGTCATTTCACTTTTGATTCTTCATTTCCTGAAACTACCACACAACAAGAGGTT 657
Query 655 TATTCCACCACAACAGGAGATCTTGTTGAAGCAGTTCTTGAAGGAAGAAATGGTTCGGTT 714
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 658 TATTCCACCACAACAGGAGATCTTGTTGAAGCAGTTCTTGAAGGAAGAAATGGTTCAGTT 717
Query 715 TTCTGCTACGGTGCTACGGGAGCAGGCAAGACTTATACGATGTTAGGGACAATGGAGAAT 774
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 TTCTGCTACGGTGCTACGGGAGCAGGCAAGACTTATACGATGTTAGGGACAATGGAGAAT 777
Query 775 CCAGGTGTTATGGTTTTAGCAATCAAAGATTTGTTTGCTAAAGTTAGACAGAGAAGCTTA 834
|||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 CCAGGTGTAATGGTTCTAGCAATCAAAGATTTGTTTGCTAAAGTTAGACAGAGAAGCTTA 837
Query 835 GATGGGAACCATGTTGTTCATCTTTCTTATCTTGAGGTTTATAATGAAACTGTTCGAGAT 894
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 838 GATGGGAACCATGTTGTTCATCTTTCTTATCTTGAGGTTTATAATGAAACTGTTAGAGAT 897
Query 895 TTGCTTTCACCTGGTAGACCTCTCATTCTCCGCGAAGATAAGCAGGGAATTGTGGCTGCT 954
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 898 TTGCTTTCACCTGGTAGACCTCTCATTCTCCGTGAAGATAAGCAGGGAATTGTGGCTGCT 957
Query 955 GGTCTCACTCAATATAGAGCTTACTCAACAGATGAGGTTATGGCTTTGCTCCAAAGGGGA 1014
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 958 GGTCTCACTCAATATAGAGCTTACTCAACAGATGAGGTTATGGCTTTGCTTCAAAGGGGA 1017
Query 1015 AATCAAAACAGAACTACTGAGCCAACTCGTTGCAATGAAACATCTTCTCGCTCACACGCC 1074
||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1018 AATCAAAACAGAACTACCGAGCCTACTCGTTGCAATGAAACATCTTCTCGCTCACATGCC 1077
Query 1075 ATCCTTCAGGTAATAGTGGAGTATAAGACTAGAGATGCTTCCATGAATATCATCAGCCGG 1134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 ATCCTTCAGGTAATAGTGGAGTATAAGACTAGAGATGCTTCCATGAATATCATCAGCCGG 1137
Query 1135 GTAGGAAAGCTATCTCTCATTGATCTTGCCGGTTCTGAAAGAGCGCTAGCAACTGATCAA 1194
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1138 GTAGGAAAGCTATCTCTCATTGATCTTGCGGGTTCTGAAAGAGCGCTAGCAACTGATCAA 1197
Query 1195 AGGACACTCAGATCACTGGAAGGAGCAAATATAAACAGATCACTTCTCGCATTAAGTAGT 1254
||||| ||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||
Sbjct 1198 AGGACGCTCAGATCACTGGAAGGTGCAAACATAAACAGATCACTTCTTGCATTAAGTAGT 1257
Query 1255 TGCATTAACGCGCTTGTGGAAGGCAAGAAACATATTCCTTACAGAAACTCAAAGCTCACA 1314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 TGCATTAACGCGCTTGTGGAAGGCAAGAAACATATTCCTTACAGAAACTCAAAGCTCACA 1317
Query 1315 CAACTACTCAAAGACTCACTAGGCGGCTCGTGTAACACGGTGATGATTGCTAATATAAGT 1374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1318 CAACTACTCAAAGACTCACTAGGCGGCTCGTGTAACACGGTGATGATTGCTAATATAAGT 1377
Query 1375 CCAAGCAGTCAATCTTTTGGTGAAACACAAAACACTCTCCATTGGGCTGATCGAGCCAAG 1434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1378 CCAAGCAGTCAATCTTTTGGTGAAACACAAAACACTCTCCATTGGGCTGATCGAGCCAAG 1437
Query 1435 GAGATTCGTGTGAAGGGATGTGAAGTAAATGAAGAGGTGGTTCAAACGGGTGAAGAAGAC 1494
|||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 1438 GAGATTCGTGTGAAGGAATGTGAAGTAAATGAAGAGGTGGTTCAAGTGGGTGAAGAAGAA 1497
Query 1495 GGGGCTGATCAGGCCAAGCTCTTGTTAGAGCTTCAAAAAGAGAACT-GTGAATTGCGTGT 1553
|| ||||||||||| ||||| |||||||| |||||||||||||| | |||||||||||||
Sbjct 1498 GGAGCTGATCAGGCTAAGCTTTTGTTAGAACTTCAAAAAGAGAA-TAGTGAATTGCGTGT 1556
Query 1554 CCAGCTCGCGAAGCAGCAGCAAAAGCTTTTGACTCTTCAAGCAGAGAACTTAGCCGCTGC 1613
|||||| || |||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 1557 CCAGCTAGCAAAGCAGCAGCAAAAGCTTTTGACTCTACAAGCAGAGAACATAGCCGCTGC 1616
Query 1614 TACTaacaacaacaacaacaacaTTTCTCTGACACCTCCATCAATCTCATCTCTAATGAC 1673
|| |||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 1617 TAATAACAACAACAACA------TTTCTCTGACACCTCCATCAATCTCATCTCTTATGAC 1670
Query 1674 TCCACCATCTGCGTTAACAGCTCAGCAGAAGAAGAAACCAAGGCATTCATTGTTATCAGG 1733
|||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1671 TCCACCGTCTGCATTAACAGCTCAGCAGAAGAAGAAACCAAGGCATTCGTTGTTATCAGG 1730
Query 1734 GACATGTTTCACACCAGAATCATCCAAAAGGACAAAAGCAGAAGAAGCTGTGAAGGAACT 1793
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1731 GACATGTTTCACACCAGAATCATTGAAAAGGACAAAAGCAGAAGAAGCTGTGAAGGAACT 1790
Query 1794 TCAGCTGACTGTAAAGGCATTAAAGATGGAGATGGAGAGAATGAAGAGGGAACATGGGTT 1853
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 1791 TCAGCTGACTGTTAAGGCATTGAAGATGGAGATGGAGAGAATGAAGAGGGAACATGGTTT 1850
Query 1854 GCAGATGAAGAAGCAAAAAGAAGAATTAATGAAAGATCTTTGTAGTAGAAAGAGCGAGAA 1913
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1851 GCAGATGAAGAAGCAAAAAGACGAATTAATGAAAGATCTTTGTAGTAGAAAGAGCGAGAA 1910
Query 1914 AACTCCAGAAAGAGGCAAAGAAACAAGGAGGATTGTCACAAGAGGGAGCTTGAGACCAAA 1973
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1911 AACTCCAGAAAGATGCAAAGAAACAAGGAGGATTGTCACAAGAGGGAGCTTGAGACCAAA 1970
Query 1974 GGAGAAGGAGAAGGAGCTGAAAAGCCCGAGTCACCGGTTTGCATCTCCAGCTGCAGCAGC 2033
||||||||| ||||| |||||||| |||||||| |||||||||||||||| |||||||||
Sbjct 1971 GGAGAAGGAAAAGGAACTGAAAAGTCCGAGTCATCGGTTTGCATCTCCAGTTGCAGCAGC 2030
Query 2034 TaaaaaaaGAAGCTTTTGGGACATAACCGTAGCTAATACTAGTCCTGCGTCGGATAGAAG 2093
|||||| ||||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 2031 TAAAAAGAGAAGCTTTTGGGACATAACCGTTGCTAATACTAGTCCTGCGTTGGATAGAAG 2090
Query 2094 GAAAACGAGAAGCCACGGTCTTGTTCATCAAGAAGCTCCTTCAAAACTGCTTCAGCCCGG 2153
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2091 GAAAACGAGAAGCCACGGTCTTGTTCATCAAGAAGCTCCTTCAAAACTGCTTCAGCCCGG 2150
Query 2154 GTTTGCTCGTCCACACATGAAGCATTAA 2181
||||||||||||||||||||||||||||
Sbjct 2151 GTTTGCTCGTCCACACATGAAGCATTAA 2178
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 108182174475
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5