BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg335126
Length=816
Score E
Sequences producing significant alignments: (Bits) Value
AT1G18710.1 | Symbols: AtMYB47, MYB47 | myb domain protein 47 |... 1131 0.0
AT1G74430.1 | Symbols: MYB95, ATMYB95, ATMYBCP66 | myb domain p... 370 1e-101
> AT1G18710.1 | Symbols: AtMYB47, MYB47 | myb domain protein 47
| chr1:6450594-6453114 FORWARD LENGTH=1119
Length=1119
Score = 1131 bits (612), Expect = 0.0
Identities = 757/823 (92%), Gaps = 26/823 (3%)
Strand=Plus/Plus
Query 1 ATGGGGAGGACGACGTGGTTCGACGACGACGGGATGAAGAAAGGAGAGTGGACGGCGGAG 60
|||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 188 ATGGGGAGGACGACATGGTTCGACGTCGACGGGATGAAGAAAGGAGAGTGGACGGCAGAG 247
Query 61 GAAGACCAGAAGCTCGTCGCTTACATCAACGAGCATGGCATCTGTGATTGGCGTTCCCTC 120
|||||||||||||||| |||||||||||||||||||||| | ||||||||||||||||||
Sbjct 248 GAAGACCAGAAGCTCGGCGCTTACATCAACGAGCATGGCGTTTGTGATTGGCGTTCCCTC 307
Query 121 CCCAAAAGAGCTGGTTTGCAGAGATGTGGAAAGAGCTGCAGATTAAGGTGGCTTAACTAT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 308 CCCAAAAGAGCTGGTTTGCAGAGATGTGGAAAGAGCTGCAGATTAAGGTGGCTTAACTAT 367
Query 181 CTAAGGCCTGGGATTAGAAGAGGCAAATTCACTCCTCAGGAAGAAGAAGATATCATCCAA 240
|||| ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 368 CTAAAGCCTGGGATTAGAAGAGGCAAATTCACTCCTCAAGAAGAAGAAGAAATCATCCAA 427
Query 241 CTTCATGCTGTTCTCGGAAACAGGTGGGCAGCCATAGCGAAGCAGATGCAGAATCGGACA 300
||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |||
Sbjct 428 CTTCATGCTGTTCTCGGAAACAGGTGGGCAGCCATGGCGAAGAAGATGCAGAATCGAACA 487
Query 301 GACAATGATATCAAGAACCATTGGAACTCTTGTCTCAAGAAAAGACTTTCGAGAAAGGGA 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 488 GACAATGATATCAAGAACCATTGGAACTCTTGTCTCAAGAAAAGACTTTCGAGAAAGGGA 547
Query 361 ATCGACCCGATGACCCACGAGCCCATCATCAAACACCTCACTATCAAGACCACTAACGCA 420
|||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 548 ATCGACCCTATGACCCACGAGCCCATCATCAAACACCTCACCGTCAATACCACTAACGCA 607
Query 421 GATTGTAGTAGCTCTTCCACCACGACGTCCCCATCG-CT--GGAAAGCCCTCATTCCTCC 477
|||||| ||| ||||||||||||||||||||| ||| | ||||||| ||| |||||||
Sbjct 608 GATTGTGGTAACTCTTCCACCACGACGTCCCCGTCGACGACGGAAAGCTCTCCTTCCTCC 667
Query 478 GGCTCAG-CTCGTCTCCTCAACAAGCTCGCCGCAGGTATCTCATCTAGACAACACAGTCT 536
||||| | ||||||| || ||||| ||||||||||||||||||||||||||||| |||||
Sbjct 668 GGCTC-GTCTCGTCTTCTTAACAAACTCGCCGCAGGTATCTCATCTAGACAACATAGTCT 726
Query 537 CGATCGGATCAAGTACATCTTCTCGAACCCAATAATCGAAAGCAGTGATCAAGTaaaaga 596
|||| |||||||||||||||| ||||| |||||||||||||||||||||||| ||||||
Sbjct 727 CGATAGGATCAAGTACATCTTGTCGAATTCAATAATCGAAAGCAGTGATCAAGCAAAAGA 786
Query 597 ggaagaagaagaaaaagaagaaggagaagaaaaagaagaaggagaagaaaaagaTTCAAT 656
|||||||||| ||| ||||||| | | ||| |||||| ||| || ||||||
Sbjct 787 GGAAGAAGAA-AAA--GAAGAAG-A-A-GAA---GAAGAA--AGA-GA------TTCAAT 828
Query 657 GATGGATCAGAAGATTGACGGTAGTGAAGGAGATGATATTCAGATATGGGACGTGGAGGA 716
||||| ||||||||||||||||||||||||||| ||||||||||| |||| || ||||||
Sbjct 829 GATGGGTCAGAAGATTGACGGTAGTGAAGGAGAAGATATTCAGATTTGGGGCGAGGAGGA 888
Query 717 AGTTAGGCGTTTAATGGAGATTGGTGCAATGGA---GTACGAGATGACTTCGTACGACGC 773
||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 889 AGTTAGGCGTTTAATGGAGATTGATGCAATGGATATGTACGAGATGACTTCGTACGACGC 948
Query 774 TGTCATGTACGACAGTACTCACATACTTGATCATCTCTTCTGA 816
|||||||||||| |||| ||||||||||||||||||||| |||
Sbjct 949 TGTCATGTACGAGAGTAGTCACATACTTGATCATCTCTTTTGA 991
> AT1G74430.1 | Symbols: MYB95, ATMYB95, ATMYBCP66 | myb domain
protein 95 | chr1:27975179-27977434 FORWARD LENGTH=1362
Length=1362
Score = 370 bits (200), Expect = 1e-101
Identities = 327/388 (84%), Gaps = 10/388 (3%)
Strand=Plus/Plus
Query 1 ATGGGGAGGACGACGTGGTTCGACGACGACGGGATGAAGAAAGGAGAGTGGACGGCGGAG 60
||||||||||||||||||||||||| |||||| ||| ||||||||||||||||||||||
Sbjct 231 ATGGGGAGGACGACGTGGTTCGACGTTGACGGGTTGAGGAAAGGAGAGTGGACGGCGGAG 290
Query 61 GAAGACCAGAAGCTCGTCGCTTACATCAACGAGCATGGCATCT-GT-GATTGGCGTTCCC 118
||||||| ||||||||| | |||||||||||| || || ||| | || ||| |||| |
Sbjct 291 GAAGACCGGAAGCTCGTGGTTTACATCAACGAACACGG--TCTAGGCGAGTGGGGTTCAC 348
Query 119 TCCCCAAAAGAGCTGGTTTGCAGAGATGTGGAAAGAGCTGCAGATTAAGGTGGCTTAACT 178
| || || ||||| ||| | || |||||||||||||| || |||||||| ||||| || |
Sbjct 349 TGCCTAAGAGAGCCGGTCTACAAAGATGTGGAAAGAGTTGTAGATTAAGATGGCTGAATT 408
Query 179 ATCTAAGGCCTGGGATTAGAAGAGGCAAATTCACTCCTCAGGAAGAAGAAGATATCATCC 238
|| | ||||||||||||| ||||||||| ||||||||||||||||||||||| ||||||
Sbjct 409 ATTTGAGGCCTGGGATTAAAAGAGGCAAGTTCACTCCTCAGGAAGAAGAAGAAATCATCA 468
Query 239 AACTTC-ATGCTGTTCTCGGAAACAGGTGGGCAGCCATAGCGAAGCAGATGC-AGAATCG 296
|| | | ||||| |||| ||||||||||||||||| ||||| ||||| |||| | || |
Sbjct 469 AA-TACCATGCTCTTCTTGGAAACAGGTGGGCAGCAATAGCTAAGCAAATGCCA-AA-CA 525
Query 297 GA-CAGACAATGATATCAAGAACCATTGGAACTCTTGTCTCAAGAAAAGACTTTCGAGAA 355
|| |||| ||||| || ||||||||||||||||| || || |||||||||||| | | ||
Sbjct 526 GAACAGATAATGACATAAAGAACCATTGGAACTCATGCCTTAAGAAAAGACTTGCTAAAA 585
Query 356 AGGGAATCGACCCGATGACCCACGAGCC 383
| |||||||| || |||||||| |||||
Sbjct 586 AAGGAATCGATCCAATGACCCATGAGCC 613
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39735210277
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5