BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg335127
Length=777
Score E
Sequences producing significant alignments: (Bits) Value
AT1G18710.1 | Symbols: AtMYB47, MYB47 | myb domain protein 47 |... 440 9e-123
> AT1G18710.1 | Symbols: AtMYB47, MYB47 | myb domain protein 47
| chr1:6450594-6453114 FORWARD LENGTH=1119
Length=1119
Score = 440 bits (238), Expect = 9e-123
Identities = 487/604 (81%), Gaps = 30/604 (5%)
Strand=Plus/Plus
Query 1 ATGGGGA-GAGCGACGTGGTTCGATGCCGACGGGACGAAGAGAGGAGAATGGACGG-AGG 58
||||||| || |||| |||||||| | |||||||| ||||| |||||| ||||||| | |
Sbjct 188 ATGGGGAGGA-CGACATGGTTCGACGTCGACGGGATGAAGAAAGGAGAGTGGACGGCA-G 245
Query 59 AGGAAGACCAGAAACTCGTCGCTTATATCGACGAATACGGCGTCGGTGACTGGCGTTTCC 118
||||||||||||| |||| |||||| ||| |||| | ||||| |||| ||||||| ||
Sbjct 246 AGGAAGACCAGAAGCTCGGCGCTTACATCAACGAGCATGGCGTTTGTGATTGGCGTTCCC 305
Query 119 TCCCTGGCAGAGCTGGTTTGCGGAGATGTGGAAAGAGCTGCAGATTAAGGTGGCTTAATT 178
|||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 306 TCCCCAAAAGAGCTGGTTTGCAGAGATGTGGAAAGAGCTGCAGATTAAGGTGGCTTAACT 365
Query 179 ATCTAAGGCCTGGGATTAAGAA-AGGCAAATTCACTCCTCAAGAAGAACAAGCTATCAT- 236
|||||| |||||||||| |||| ||||||||||||||||||||||||| ||| |||||
Sbjct 366 ATCTAAAGCCTGGGATT-AGAAGAGGCAAATTCACTCCTCAAGAAGAAGAAGAAATCATC 424
Query 237 CAATTTACATTCTGTTCTCGGGAACAGGTGGGCAGCCATAGCGCAGCAGATGCCCAATCG 296
||| || ||| |||||||||| ||||||||||||||||| ||| || |||||| |||||
Sbjct 425 CAACTT-CATGCTGTTCTCGGAAACAGGTGGGCAGCCATGGCGAAGAAGATGCAGAATCG 483
Query 297 ATCAGACAATGACATCAAGAACCATTGGAACTCTTGTCTCAAGAAAAGACTAGAGAGAAA 356
| |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 484 AACAGACAATGATATCAAGAACCATTGGAACTCTTGTCTCAAGAAAAGACTTTCGAGAAA 543
Query 357 CGGACTTGACCCAATGACCCACCAGCCTATCATCAATA-ACGTCGCCGTCAAAACTCCGT 415
||| | ||||| ||||||||| |||| |||||||| | || || ||||||| || |
Sbjct 544 GGGAATCGACCCTATGACCCACGAGCCCATCATCAA-ACACCTCACCGTCAATAC-C--- 598
Query 416 TATTTAACACAGAATGCAGCAGCTCTTCTTCCGCGAGGGCGA-GTCCATCTTCTTCCTCC 474
| | ||| |||| || | | |||||| || ||| | | ||| | | | |
Sbjct 599 -ACT-AACGCAGATTGTGGTAACTCTTCCACCACGACGTCCCCGTCGA-CGACGGAAAGC 655
Query 475 TTCTCCTCGTCCTCCGGCTCAGCC-CATCTCCTTAACAAGA-TCGCCACTGGTATCTCAT 532
| ||||| ||||||||||| | | | ||| |||||||| | ||||| | ||||||||||
Sbjct 656 T-CTCCT--TCCTCCGGCTC-GTCTCGTCTTCTTAACAA-ACTCGCCGCAGGTATCTCAT 710
Query 533 CTAGACAACACTGTGTCGACGACATGATCAAGAACATCTTCTCGGATCCGAGAATC-ACA 591
|||||||||| | ||| ||| | ||||||| ||||||| ||| || | | |||| | |
Sbjct 711 CTAGACAACA-TA-GTCT-CGATAGGATCAAGTACATCTTGTCGAATTCAATAATCGA-A 766
Query 592 AGCA 595
||||
Sbjct 767 AGCA 770
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37776078544
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5