BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg335142
Length=1722
Score E
Sequences producing significant alignments: (Bits) Value
AT1G18840.1 | Symbols: IQD30 | IQ-domain 30 | chr1:6500848-6504... 2623 0.0
> AT1G18840.1 | Symbols: IQD30 | IQ-domain 30 | chr1:6500848-6504413
REVERSE LENGTH=2360
Length=2360
Score = 2623 bits (1420), Expect = 0.0
Identities = 1623/1723 (94%), Gaps = 5/1723 (0%)
Strand=Plus/Plus
Query 1 ATGGGAAAGCCTGCTAGGTGGTTAAAAAGTGTACTACTTGGAAAGAAACCATCTAAATCT 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 422 ATGGGAAAGCCTGCAAGGTGGTTAAAAAGTGTACTACTTGGAAAGAAACCATCTAAATCT 481
Query 61 AGTGGTTCTAAAGATAAGGAGAGAATTGTGAATGGAAAAGAAGTAGTGGTTATTTCAAAG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 482 AGTGGTTCTAAAGATAAGGAGAGAATTGTGAATGGAAAAGAAGTAGTGGTTATATCAAAG 541
Query 121 ATTGAAGAATCCGATGTTGTTTCAGATCTTCCATCCATTGGAAATGCAGCAATTTACACC 180
||||||||||||||||||||||| |||||| |||| ||||||||||||||| | || |||
Sbjct 542 ATTGAAGAATCCGATGTTGTTTCGGATCTTTCATCAATTGGAAATGCAGCAGTCTATACC 601
Query 181 AGTGGTATGGCAGAGACACAGAATCTAGAACATGAAAATGTTTCAGACAACGAGATACAA 240
|||||||| | |||||| ||||||||| |||||||| ||||||| ||| |||||||||||
Sbjct 602 AGTGGTATTGTAGAGACGCAGAATCTAAAACATGAAGATGTTTCGGACGACGAGATACAA 661
Query 241 GTTTCCGAGGTTCAACCAACAGATTCTCAAGATGCTGCTTCTGTTCCTGATGATTCGCTA 300
||||| ||||| |||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 662 GTTTCTGAGGTCCAACCAACAGATTCTCAAGATGTTGCTTCTGTTCCTGATGATTCGCTA 721
Query 301 TCCGAATCAGAGAAAATTCAACAAGAGATTGCAGCAGTTACCGTGCAGGCTGTGTATAGA 360
||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct 722 TCCGAATCAGAGAAAATTCAACAAGAGATCGCAGCAGTTACCGTGCAGGCTGCGTATAGA 781
Query 361 GGCTACTTGGCTCGACGTGCTTTCAAGATATTAAAAGGTATAATAAGGCTACAAGCACTT 420
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 782 GGATACTTGGCACGACGTGCTTTCAAGATATTAAAAGGTATAATAAGGCTACAAGCACTT 841
Query 421 ATCCGTGGTCACATGGTTAGGAGGCAAGCTGTTTCGACTCTGTGCTGTGTTATGGGAATT 480
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 842 ATCCGTGGTCACATGGTTAGAAGGCAAGCTGTTTCGACTCTGTGCTGTGTTATGGGAATT 901
Query 481 GTCAGATTGCAAGCACTTGCTCGAGGAAGAGAGATCAGACATTCCGACATTGGAGTTGAA 540
||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||
Sbjct 902 GTCAGATTGCAAGCACTTGCTCGTGGGAGAGAGATCAGACATTCAGACATTGGAGTTGAA 961
Query 541 GTTCAGAGGAAATGCCGGTTTT-ATCATCAGCCTTTAGAGAATAAAGCAAAATCTGTTGT 599
|||||||||||||| | ||| ||||||||||||||||||||||||| || || |||||
Sbjct 962 GTTCAGAGGAAATGTCA-TTTGCATCATCAGCCTTTAGAGAATAAAGCCAACTCGGTTGT 1020
Query 600 TGATACACATACTTACCTGGGAATCAAGAAGCTAACAGCAAATGCTTTTGCTCAGAAGCT 659
|||||||||| ||||| |||||||||| |||||||||| |||||||||||||||||||||
Sbjct 1021 TGATACACATTCTTACTTGGGAATCAATAAGCTAACAGGAAATGCTTTTGCTCAGAAGCT 1080
Query 660 TCTAGCTTCATCGCCAAACGTGATGCCGTTGTCCCTTGACAATGATTCTTCCAGTTCAAT 719
|||||||||||||||||||||| |||| |||||||| |||||||||||||||| ||||||
Sbjct 1081 TCTAGCTTCATCGCCAAACGTGCTGCCTTTGTCCCTCGACAATGATTCTTCCAATTCAAT 1140
Query 720 CTGGTTAGAGAACTGGTCAGCTTCTTGCTTCTGGAAACCAGTTCCTCAGCCAAAGAAAGT 779
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1141 CTGGTTAGAGAACTGGTCAGCATCTTGCTTCTGGAAACCAGTTCCTCAGCCAAAGAAAGC 1200
Query 780 ATCAGTCAGAAAAACTCAGAAGAAGTTTGCCAGTAATTCTCAGATAGTCGAGGCTGAGTT 839
|||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1201 ATCACTCAGAAAATCTCAGAAGAAGTTTGCCAGTAATCCTCAGATAGTCGAGGCTGAGTT 1260
Query 840 TGCTAGACCAAAGAAGAGTGTTCGCAAAGTCCCTACTTCAAATCTCAACAGTTCCCCGGT 899
||| |||||||||||||||||||||||||||||| ||||||||||| ||| |||| ||||
Sbjct 1261 TGCGAGACCAAAGAAGAGTGTTCGCAAAGTCCCTTCTTCAAATCTCGACAATTCCTCGGT 1320
Query 900 GGCACAGACATCATTTGAGTTTGAGAAACCCAAACGCAGCTTCCGCAAGGTTTCAACAAG 959
|||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1321 GGCACAAACATCATCTGAGCTTGAGAAACCCAAACGCAGCTTCCGCAAGGTTTCAACAAG 1380
Query 960 CCAATCTGTAGAACCTCTTCCGGCTATGGACAATCCTCAAGTTGATCTAGAAAAAGTGAA 1019
||||||||||||||| || ||| |||||||||||||||||||||||||||| ||||||||
Sbjct 1381 CCAATCTGTAGAACCACTACCGTCTATGGACAATCCTCAAGTTGATCTAGAGAAAGTGAA 1440
Query 1020 ACGCGGCTTGAGGAAAGTACATAATCCCGTAGTTGAGAACTCTATCCAACCTCAAGTGGT 1079
||| |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1441 ACGTGGCTTGAGAAAAGTACATAATCCCGTAGTTGAGAACTCTATCCAACCTCAACTGGT 1500
Query 1080 TCCACAGATTGCAGTCGAAAAGCCAAATGCTGGTTTAGAAGAATCTGTGAATGCCTTTGA 1139
||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 1501 TCCACAGATTGCAGTTGAAAAGCCAAATGGTAGTTTAGAAGAATCTGTGAATGCCTTTGA 1560
Query 1140 TGGAGAGAAAGATGATGAAGTGGCTGAGACAGTGGTGGAACAACAACCTGAGGAGTTAAT 1199
|| ||||||||| |||||||||||||||||||||||| ||||||||||| ||||| ||
Sbjct 1561 TGAAGAGAAAGAAGATGAAGTGGCTGAGACAGTGGTG---CAACAACCTGAAGAGTTGAT 1617
Query 1200 ACAAACTCATAAACCATTGGGAAACAATGAAGCACTTGATTCCACTTTGGTCAACCAAAT 1259
||||||||||| ||||||||| | ||||||| | ||||||||||| ||||||||||||||
Sbjct 1618 ACAAACTCATACACCATTGGGGACCAATGAATCTCTTGATTCCACATTGGTCAACCAAAT 1677
Query 1260 CGAAGAGAGTGAAGAAACTGTAATGGCTGAGGAAAAGGAGGATGCAAAAGAAGAGAGAAC 1319
||||||||||||||||| ||||||||| |||||||||||||||| |||||||||||| ||
Sbjct 1678 CGAAGAGAGTGAAGAAAATGTAATGGCCGAGGAAAAGGAGGATGTAAAAGAAGAGAGGAC 1737
Query 1320 TCCCAAACAAAACCATAAGGAAAATTCAGCTGGCAAGGAGAATCAGAAATCCGGGAAAAA 1379
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 1738 TCCCAAACAAAACCATAAGGAGAATTCAGCTGGGAAGGAGAATCAGAAATCCGGGAAAAA 1797
Query 1380 GGCTTCTTCGGTTACTACTACTCAAACCGCCGAGTGTCAAGAGAGTGGTAATGGTAATCA 1439
|||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1798 GGCTTCTTCGGTTACTGCTACTCAAACCGCCGAGTTTCAAGAGAGTGGTAATGGTAATCA 1857
Query 1440 GACTAGTAGCCCGGGAATACCGAGCTATATGCAGGCGACTAAATCCGCTAAAGCAAAGCT 1499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1858 GACTAGTAGCCCGGGAATACCGAGCTATATGCAGGCGACTAAATCCGCTAAAGCAAAGCT 1917
Query 1500 GAGGCTACAAGGTTCTTCTTCACCTAGGCAACTGGGGACTACTGAGAAAGCCAGTAGACG 1559
|||||||||||| |||||||||||||||||| | ||||| ||||||||||||||||||||
Sbjct 1918 GAGGCTACAAGGCTCTTCTTCACCTAGGCAATTAGGGACAACTGAGAAAGCCAGTAGACG 1977
Query 1560 TTACTCTCTACCATCTTCAGGTAATAGTGCAAGAGTCACTTCTCATTCTCCTAAAACAAG 1619
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 1978 TTACTCTCTACCATCTTCAGGTAATAGTGCAAAAATCACTTCTCATTCTCCTAAAACAAG 2037
Query 1620 AGTCTCTCACTCGGGTGGCAAAAACGGGAATAAGACAGAGAAACCTCTTCTTTCGTCCCG 1679
|||||| ||||| ||||||||| |||||| |||||||||||| ||||||||||||||||
Sbjct 2038 AGTCTCAAACTCGAGTGGCAAAAGCGGGAACAAGACAGAGAAAACTCTTCTTTCGTCCCG 2097
Query 1680 AGAAGGAAACGGGAAGACAACTCCGGTAGAGTGGAAGAGATGA 1722
|||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 2098 AGAAGGAAACGGTAAGGCAACTCCGGTAGAGTGGAAGAGATGA 2140
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85140124320
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5