BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg335144
Length=1449
Score E
Sequences producing significant alignments: (Bits) Value
AT1G18860.1 | Symbols: WRKY61, ATWRKY61 | WRKY DNA-binding prot... 1845 0.0
> AT1G18860.1 | Symbols: WRKY61, ATWRKY61 | WRKY DNA-binding protein
61 | chr1:6509492-6511227 FORWARD LENGTH=1463
Length=1463
Score = 1845 bits (999), Expect = 0.0
Identities = 1330/1479 (90%), Gaps = 66/1479 (4%)
Strand=Plus/Plus
Query 1 ATGGAGGAGGCTAAAGAGGAAAATCGAAGACTAAAGTCATCATTGAGTAAAATCAAGAAA 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3 ATGGATGAGGCTAAAGAGGAAAATCGAAGACTAAAGTCATCATTGAGTAAAATCAAGAAA 62
Query 61 GATTTTGACATCCTTCAAGCACAATACCACCAATTAATGGTCC-AACATAAAGAACTAAA 119
|||||||||||||||||| |||||||| |||||||||||| || ||||||| |||| ||
Sbjct 63 GATTTTGACATCCTTCAAACACAATACAACCAATTAATGG-CCAAACATAACGAACCAAC 121
Query 120 CAAGTTCTC-ATCAAAAGGGCATCATCAAGACAAAGAAAAAGACGAAAATGAAGACAAAG 178
||||||| | |||||||||||||||||||||||||| | |||| ||||||||| ||
Sbjct 122 CAAGTTC-CAATCAAAAGGGCATCATCAAGACAAAG-----G-CGAAGATGAAGACAGAG 174
Query 179 AAATAGTTAACGAACGCGAAGAACTTGTCTCGTTGAGCCTAGGCAGACGGTTAAAGTCAC 238
||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 175 AAAAAGTTAACGAACGTGAAGAACTTGTCTCGTTGAGCCTAGGCAGACGGTTAAATTCA- 233
Query 239 CA-GTTTCAAGTGGTTTGATGACGAACAAAGAAGAAAAAAGTAAAGATATAATGGAGGAA 297
| ||| ||||||| | | |||| ||||||||||||| ||||||| | | || |||
Sbjct 234 GAGGTTCCAAGTGG--T--T--CGAATAAAGAAGAAAAAAATAAAGATGT--T-GAAGAA 284
Query 298 GCGGGTGATGACAAAAATTTA-GATGATAATGAAAAAAGTAGTAATCAAGGGTTGAGTGT 356
|||| | ||||| ||| ||| ||||||||||||||||| |||| ||||||||||||| |
Sbjct 285 GCGGAAGGTGACAGAAA-TTATGATGATAATGAAAAAAGCAGTATTCAAGGGTTGAGTAT 343
Query 357 AGGGATTGAATACAAGGCTCTGAATAATCCAAATGAGAAGTTAGATATTGATCATATTCA 416
|||||||||||||||||| ||| |||||| |||||||||||||| |||||||||| |||
Sbjct 344 GGGGATTGAATACAAGGCTTTGAGTAATCCTAATGAGAAGTTAGAGATTGATCATAATCA 403
Query 417 AGAAACAATGTCGTTGAAGATTAGTAACAATAATAAGATTC-TATCAGAGAATAGTTATG 475
|||||| ||||||||| ||||||||||||||||||||| || |||| | ||||||| ||
Sbjct 404 AGAAACCATGTCGTTGGAGATTAGTAACAATAATAAGA-TCAGATCACAAAATAGTTTTG 462
Query 476 GTTTTAAGAATGATGGAGATGATAATGAAGATGAAGATGAGATTTTGCCTCAAAACCTTG 535
| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 463 GGTTTAAGAATGATGGAGATGATCATGAAGATGAAGATGAGATTTTGCCTCAAAACCTTG 522
Query 536 TTAAGAAAACTAGGGTTTCGGTGAGATCAAGATGTGAGACACCAACGATGAACGACGGAT 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 523 TTAAGAAAACTAGGGTTTCGGTGAGATCAAGATGTGAGACACCAACGATGAACGACGGAT 582
Query 596 GTCAATGGAGGAAATATGGCCAGAAAATAGCTAAAGGCAACCCATGTCCCCGAGCTTACT 655
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 583 GTCAATGGAGGAAATATGGCCAGAAAATAGCTAAAGGCAATCCATGTCCCCGAGCTTACT 642
Query 656 ACCGTTGTACCATTGCAGCTTCATGTCCCGTAAGAAAACAGGTGCAAAGAAGTTCAGAAG 715
| ||||| |||||||||||||| ||||| ||||||||||||||||||||| |||||||||
Sbjct 643 ATCGTTGCACCATTGCAGCTTCTTGTCCAGTAAGAAAACAGGTGCAAAGATGTTCAGAAG 702
Query 716 ATATGTCTATACTTATCTCAACATACGAAGGAACACACAACCATCCACTTCCCATGTCAG 775
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 703 ATATGTCTATACTTATCTCAACGTACGAAGGAACACATAACCATCCACTTCCCATGTCAG 762
Query 776 CAACCGCCATGGCCTCGGCCACTTCCGCTGCTGcctccatgctcctctccggcgcctcct 835
|||| ||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 763 CAACTGCCATGGCCTCTGCCACTTCCGCTGCCGCCTCCATGCTTCTCTCCGGCGCCTCCT 822
Query 836 cctcctcctccACCGCAGCTGATCTTCAGGGCCTTAACTTCTCTCTCTCCGGCAATAACA 895
||||||| ||| |||||||||||||||| ||||||||||||||||| |||||||| ||||
Sbjct 823 CCTCCTCATCCGCCGCAGCTGATCTTCATGGCCTTAACTTCTCTCTTTCCGGCAACAACA 882
Query 896 TCACTCCAAAACCTAAATCACCTTTCCTCCAATCCTCTTCTTCCTCTTCTTCTTCTGGCC 955
||||||||||||||||| | | ||||||||||||| | |||| | | ||||| ||||
Sbjct 883 TCACTCCAAAACCTAAAACTCATTTCCTCCAATCC-C--CTTC-T-T-CTTCT---GGCC 933
Query 956 ATCCGACAGTCACTCTCGACCTCACAACCTCCTCCTCCTCGCAGCAACCGTTCTTATCAA 1015
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 934 ATCCGACCGTCACTCTCGACCTCACAACCTCCTCCTCGTCGCAGCAACCGTTCTTATCAA 993
Query 1016 TGCTCAATAGATTCAGTTCTCCTCCTAGTAATGTCTCACGATCTAATAGTTATCCTTCAA 1075
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 994 TGCTCAATAGATTCAGCTCTCCTCCAAGTAATGTCTCACGATCTAATAGTTATCCTTCAA 1053
Query 1076 CCAATCTCAACTTTTCAAACAACACCAACACATTGATGAATTGGggtggtggtggtggtg 1135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1054 CCAATCTCAACTTTTCAAACAACACCAACACATTGATGAATTGGGGTGGTGGTGGT---- 1109
Query 1136 gtAATCCCAATGATCAATACCGTGCAGCTTACAGCAACATTAACACCCATCAGCAATC-C 1194
||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 1110 --AATCCCAGTGATCAATACCGTGCAGCTTACGGCAACATTAACACCCATCAGCAATCAC 1167
Query 1195 CG-A--AC-----C----------G--CCG--GG-TCATCTTTCGACCCGTTTGGAAGAT 1231
| | || | | ||| || ||||||||||| |||||||||||||
Sbjct 1168 CTTACCACAAAATCATTCAAACCCGAACCGCCGGGTCATCTTTCGATCCGTTTGGAAGAT 1227
Query 1232 CATCTTCATCACATCCTCTACAAACCAATCTTGATCATATTGGAATCAAGAACATTAAAA 1291
|||||||||||||| ||| ||||| |||||||||||||| |||||||||||||| | |
Sbjct 1228 CATCTTCATCACATTCTCCACAAATAAATCTTGATCATATCGGAATCAAGAACATCATCA 1287
Query 1292 CTC-CTCAAGTGCCATATATACCGGCTGAAACAATCAAGGCAATCACGACAGATCCAAAT 1350
|| | |||||||||| | ||||||||||||||||||||||||||||||||||||||| |
Sbjct 1288 GTCAC-CAAGTGCCATCTTTACCGGCTGAAACAATCAAGGCAATCACGACAGATCCAAGT 1346
Query 1351 TTCCAATCAGCTTTGGCGACTGCTCTATCTTCCATCATAGGCGGCGATTTAAAGATTGAT 1410
|||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 1347 TTCCAATCGGCTTTGGCGACAGCTCTATCTTCCATCATGGGCGGCGATTTAAAGATTGAT 1406
Query 1411 CATAATGTGACTAGAAATGAAGCCGAGAAGAGCCCTTAA 1449
|| |||||||||||||||||||| |||||||||||||||
Sbjct 1407 CACAATGTGACTAGAAATGAAGCTGAGAAGAGCCCTTAA 1445
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71435375535
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5