BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg335156
Length=954
Score E
Sequences producing significant alignments: (Bits) Value
AT1G19010.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1435 0.0
> AT1G19010.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G74860.1);
Has 337 Blast hits to 320 proteins in 97 species: Archae -
0; Bacteria - 14; Metazoa - 153; Fungi - 26; Plants - 76; Viruses
- 0; Other Eukaryotes - 68 (source: NCBI BLink). | chr1:6565494-6567525
FORWARD LENGTH=1253
Length=1253
Score = 1435 bits (777), Expect = 0.0
Identities = 903/963 (94%), Gaps = 12/963 (1%)
Strand=Plus/Plus
Query 1 ATGACCGACCCAGAGAAATTAACCGCCTTGAAGAAGGCTTACGCTGAGACAATACTGAAC 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 123 ATGACTGACCCAGAGAAATTAACCGCCTTGAAGAAGGCTTACGCTGAGACAATACTGAAC 182
Query 61 ACAGCCAAGGAAGCGGCGGCGCGTGTTATGATTACTGAGAAGAAAGCGCGTGAGTATCAG 120
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 183 ACAGCCAAGGAAGCGGCGGCGCGTGTTATGATTACTGAGAGGAAAGCGCGTGGGTATCAG 242
Query 121 CAAGAGCTTGCGGCTGTTAGAGATGAGGCTCTCCGTACATGTCTTAGGCTTAAACAGATG 180
|||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 243 CAAGAGCTTGCGTCTGTTAGAGATGAGGCTCTTCGTGCATGTCTTAGGCTTAAACAGATA 302
Query 181 TATGATTCCAAGGTAAAGGAGGCAGAAATGATATCTTTGAAGAAGCAGCAAAAGATTGAG 240
|||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 303 TATGATTCCAAGGTCAAGGAGGCAGAAATGATATCTTTGCAGAAGCAGCAAAAGATTGAG 362
Query 241 GAACTTGAAGCTCAACTTGGTGAAGCTGAAGATATAGTAGGAGAGCTAAGGACGGAGTTA 300
|||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 363 GAACTTGAAGCTCAACTTGGAGAAGCTGAAGATATAGTAGGAGAGTTAAGGACGGAGTTA 422
Query 301 CGAGAATCTCGGTATCTCCTGGAGAAATTGACAAATGGTTGTCAAACAAATCTTAGCAAA 360
|||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 423 CGAGAATCGCGGTATCTCCTGGAGAAATTGGCAAATGGTTGTCAAACAAATCTTAGCAAA 482
Query 361 GAGGAGAAAACCCCCAATGAAGCAGTTTCTTTAGAAGTGCGTGAGGACTCTAGCAACCAT 420
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 483 GAGGAGAAAGCCCCCAATGAAGCAGTTTCTTTAGAAGTGCGTGAGGACTCTAGCAACCAC 542
Query 421 GAGAGATCAGTAGTGGCTAATGGGATTAAACTACATATGAGTGACAGAGAT-TTAAGTAT 479
||||||||||| ||||||| || ||||||| ||||||||||||||||||| ||| ||||
Sbjct 543 GAGAGATCAGTTGTGGCTAGTGTTATTAAACCACATATGAGTGACAGAGATCTTA-GTAT 601
Query 480 TAATCGGTGTTCTTATAAAGAGAATAAAGATCCTTGTCTTCATACGCTTCCTTCCATACT 539
||| |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 602 TAACCGGTGTTCTTATAAAGAGAATAAAGATCCTTGTCTTTATACTCTTCCTTCCATACT 661
Query 540 AAGTAGACGCAGAGATGCTGAGGCGTTGGAAAGGAACA-TGGGCAATGGAGATTGTGCTG 598
||||||| ||||||| ||||||| | | |||||||||| | |||||||||||||||||
Sbjct 662 AAGTAGATGCAGAGAAGCTGAGGTGGTAGAAAGGAACACTAT-CAATGGAGATTGTGCTG 720
Query 599 ATGTGGAATCACTTACAGAAGCAGGGAAGAAAGAAGAGAAAGAGAATGATATTGAGCTTT 658
||||||||||||||||||||||| ||||| |||||| |||||||||||||||||||||||
Sbjct 721 ATGTGGAATCACTTACAGAAGCAAGGAAGGAAGAAGCGAAAGAGAATGATATTGAGCTTT 780
Query 659 CTACTACACCTTTGTCGCCTTCTGAGAAACCA-TGTATCAAATTCTCGTATAAGAGGAAG 717
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 781 CTACTACACCTTTGTCGCCTTCTGAGAAAC-AGTGTATCAAATTCTCGTATAAGAGGAAG 839
Query 718 CGCAGCAAC-A-GCAA----CAGCCCTGAAGGAGGAGGTTCCTCCTCACAAgatgatgat 771
| | || | | || ||||||||||||||||||||||||||||||||||||||||
Sbjct 840 CATAATAAGGATGGAAGTAACAGCCCTGAAGGAGGAGGTTCCTCCTCACAAGATGATGAT 899
Query 772 gatgatgatgaAAGCAGAAACAGGAGACAGAAGACTGGTGAGAAAGACAACGCTTACTTG 831
|| || ||||||||||||| ||||||||| ||||||||||||||||||||||| || |||
Sbjct 900 GACGACGATGAAAGCAGAAGCAGGAGACATAAGACTGGTGAGAAAGACAACGCGTATTTG 959
Query 832 GATTCTTTCACCAGTACTGAACCATCTCGTGATAGTCGACGTGTAGCTCAGGTCGCTCGT 891
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 GATTCTTTCACCAGCACTGAACCATCTCGTGATAGTCGACGTGTAGCTCAGGTCGCTCGT 1019
Query 892 CAGCTTTTACCATTCTCAGAGAAGAAAGTGTTGCAGCAGAGCCAATGTGATGATGTCCCT 951
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct 1020 CAGCTTTTACCATTCTCAGAGAAGAAAGGGTTGCAGCAGAGCCAATGTGATGATGTTCCT 1079
Query 952 TGA 954
|||
Sbjct 1080 TGA 1082
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46667522563
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5