BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg335160

Length=612
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G19086.1 | Symbols:  | unknown protein; LOCATED IN: endomemb...   324    7e-88
  AT2G28000.1 | Symbols: CPN60A, CH-CPN60A, SLP | chaperonin-60al...   176    2e-43


> AT1G19086.1 | Symbols:  | unknown protein; LOCATED IN: endomembrane 
system; Has 30201 Blast hits to 17322 proteins in 780 
species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi 
- 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 
(source: NCBI BLink). | chr1:6588542-6589338 FORWARD LENGTH=544
Length=544

 Score =  324 bits (175),  Expect = 7e-88
 Identities = 262/301 (87%), Gaps = 17/301 (6%)
 Strand=Plus/Plus

Query  318  GAGCACTGGGATCATGACGCTAGTTCCTCGGATG-T-TGG-TGATCCTGA-A-AGATATC  372
            |||||||||||||||||| |||||| |||||||| |  || || |  ||| |  || | |
Sbjct  205  GAGCACTGGGATCATGACACTAGTTGCTCGGATGATGAGGATGTTGGTGATACTGAAAGC  264

Query  373  -ATGCATGTTCCAAGTGCAATGAGGGATTTTGAAGACAAAGATAGAAAAGCCTTCCTTAG  431
             || |||||||||||||||||||||||||||  ||| | ||||||  | || ||||||||
Sbjct  265  TAT-CATGTTCCAAGTGCAATGAGGGATTTTCTAGATATAGATAGCGAGGCATTCCTTAG  323

Query  432  CAATTCAGGTAGAGACATGAAGAACATTCTT-ACAAAGGTCAAGGAATCTGAGAAAAAAG  490
            ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct  324  CAATTCAGGTAGAGACATGAAGAACATTCTTAAC-AAGGTCAAGGAATCTGAGAAAAAAG  382

Query  491  TCCAGGTAAATGTTCCACTTATCTCTGCTCTGGTTTGTTTGATGAGAGAAGTTCAGAGTC  550
            |||||||||     |   ||||||||||||||||||||||||||||| ||||||||||||
Sbjct  383  TCCAGGTAA-----C---TTATCTCTGCTCTGGTTTGTTTGATGAGATAAGTTCAGAGTC  434

Query  551  TTTCTTACTCGAGGAAAGATTTATCTAAGAGCTATGTGTGGGAGTTGAAAAATTCTGTTT  610
            ||||||| ||||| |||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct  435  TTTCTTATTCGAGAAAAGGTTTATCTAAGAGCTATGTGTGGGAGTTGAAGAATTCTGTTT  494

Query  611  A  611
            |
Sbjct  495  A  495


> AT2G28000.1 | Symbols: CPN60A, CH-CPN60A, SLP | chaperonin-60alpha 
| chr2:11926449-11929389 FORWARD LENGTH=2120
Length=2120

 Score =  176 bits (95),  Expect = 2e-43
 Identities = 137/157 (87%), Gaps = 4/157 (3%)
 Strand=Plus/Plus

Query  160   GTCGGAGCAGCAACTGAAACGGAGCTTGAGGACCGTGAGCTCCCTATAGATGATGCAGA-  218
             |||||||||||||||||||| ||||||||||||||| |||| | ||| || |||||| | 
Sbjct  1427  GTCGGAGCAGCAACTGAAACTGAGCTTGAGGACCGTAAGCTTCGTATCGAGGATGCAAAG  1486

Query  219   AAC-CATGACTTTTGCTGCTATCGAAGACGGGATAGTTCCAGGTGGGGGTGCAACTTGGG  277
             ||| ||  || |||||||||||||| || || |||||||||||||| |||||  ||| ||
Sbjct  1487  AACGCA--ACATTTGCTGCTATCGAGGAAGGCATAGTTCCAGGTGGTGGTGCTGCTTTGG  1544

Query  278   TGCATCTCTCCACTGTTATTCCCGCCATCAAGGAGAC  314
             |||||||||||||||||||||||||||| ||||||||
Sbjct  1545  TGCATCTCTCCACTGTTATTCCCGCCATTAAGGAGAC  1581



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 29487444289


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5