BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg335174
Length=3291
Score E
Sequences producing significant alignments: (Bits) Value
AT1G19220.1 | Symbols: ARF19, IAA22, ARF11 | auxin response fac... 4200 0.0
AT5G20730.1 | Symbols: NPH4, MSG1, IAA21, ARF7, TIR5, BIP | Tra... 377 3e-103
> AT1G19220.1 | Symbols: ARF19, IAA22, ARF11 | auxin response factor
19 | chr1:6628068-6633087 REVERSE LENGTH=3896
Length=3896
Score = 4200 bits (2274), Expect = 0.0
Identities = 2516/2632 (96%), Gaps = 19/2632 (1%)
Strand=Plus/Plus
Query 676 GTTTG-CAGAGATGAGAAATCACAGCTGATGTTGGGTATAAGACGTGCAAATAGACAAAC 734
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 941 GTTTGTAAGAGATGAGAAATCACAGCTGATGTTGGGTATAAGACGTGCAAATAGACAAAC 1000
Query 735 TCCGACTCTTTCCTCATCGGTCATATCCAGCGACAGTATGCACATTGGGATTCTTGCAGC 794
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1001 TCCGACTCTTTCCTCATCGGTCATATCCAGCGACAGTATGCACATTGGGATACTTGCAGC 1060
Query 795 TGCAGCTCATGCTAATGCCAATAGTAGCCCTTTTACCATCTTCTTCAATCCAAGGGCAAG 854
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1061 TGCAGCTCATGCTAATGCCAATAGTAGCCCTTTTACCATCTTCTTCAATCCAAGGGCAAG 1120
Query 855 TCCTTCAGAGTTTATTGTTCCTTTAGCCAAATACAACAAAGCCTTGTACGCTCAAGTATC 914
||||||||||||| | ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1121 TCCTTCAGAGTTTGTAGTTCCTTTAGCCAAATACAACAAAGCCTTATACGCTCAAGTATC 1180
Query 915 TCTAGGAATGAGATTCCGGATGATGTTTGAGACCGAGGATTGTGGGGTTCGCAGATATAT 974
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 1181 TCTAGGAATGAGATTCCGGATGATGTTTGAGACTGAGGATTGTGGGGTTCGTAGATATAT 1240
Query 975 GGGTACAGTCACTGGTATTAGTGATCTGGACCCTGTAAGATGGAAAGGCTCACAATGGCG 1034
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1241 GGGTACAGTCACAGGTATTAGTGATCTTGACCCTGTAAGATGGAAAGGCTCACAATGGCG 1300
Query 1035 TAATCTTCAGGTAGGATGGGATGAATCAACAGCTGGAGATAGGCCAAGCCGAGTATCTAT 1094
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1301 TAATCTTCAGGTAGGATGGGATGAATCAACAGCTGGAGATAGGCCAAGCCGAGTATCCAT 1360
Query 1095 ATGGGAAATCGAACCCGTCATAACTCCTTTTTATATATGTCCTCCTCCATTTTTCAGACC 1154
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1361 ATGGGAAATCGAACCCGTCATAACTCCTTTTTACATATGTCCTCCTCCATTTTTCAGACC 1420
Query 1155 TAAGTACCCGAGGCAACCGGGGATGCCAGATGATGAGTTGGACATGGAAAATGCTTTCAA 1214
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 1421 TAAGTACCCGAGGCAACCCGGGATGCCAGATGATGAGTTAGACATGGAAAATGCTTTCAA 1480
Query 1215 AAGAGCAATGCCTTGGATGGGAGATGATTTTGGGATGAAGGACGCGCAGAGTTCGATGTT 1274
|||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||
Sbjct 1481 AAGAGCAATGCCTTGGATGGGAGAAGACTTTGGGATGAAGGACGCACAGAGTTCGATGTT 1540
Query 1275 CCCTGGTTTAAGTCTAGTTCAATGGATGAGTATGCAGCAAAACAATCCATTGTCAGGTTC 1334
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1541 CCCTGGTTTAAGTCTAGTTCAATGGATGAGTATGCAGCAAAACAATCCATTGTCAGGTTC 1600
Query 1335 TGCTACTCCTCAGCTCCCGTCTGCGCTCTCATCTTATAACCTACCAAACAATTTTGCTTC 1394
||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 1601 TGCTACTCCTCAGCTCCCGTCCGCGCTCTCATCTTTTAACCTACCAAACAATTTTGCTTC 1660
Query 1395 CAATGACCCTTCGAAGCTGTTGAACTTCCAGTCCCCAAACCTCTCTTCCGCAAATTCCCA 1454
||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1661 CAACGACCCTTCCAAGCTGTTGAACTTCCAATCCCCAAACCTCTCTTCCGCAAATTCCCA 1720
Query 1455 ATTCAACAAATCAAACACGGTTAACCATATCAGCCAACAGATGCAAGCACAACCAGCCAT 1514
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1721 ATTCAACAAACCGAACACGGTTAACCATATCAGCCAACAGATGCAAGCACAACCAGCCAT 1780
Query 1515 GGTGAAATCT---CTacaacaacaacaacaacaacaac-a-a-c-a-a-cagctgcaaca 1565
|||||||||| | ||||||||||||||||||||||| | | | | | || | |||||
Sbjct 1781 GGTGAAATCTCAACAACAACAACAACAACAACAACAACAACACCAACACCAACAACAACA 1840
Query 1566 a---caacaacaacaacaacTACAGATGTCACACCAACAGCTGCAGCAACAAGGGAATTA 1622
| ||||||||||||||||||||||||||||| |||||| ||||||||||||||| |||
Sbjct 1841 ACTGCAACAACAACAACAACTACAGATGTCACAGCAACAGGTGCAGCAACAAGGGATTTA 1900
Query 1623 TAGCAATGGTGCGAGTGCTGTTGCTAACCAAGTCTCTTGTCAAAATCCAAACCAACCTAC 1682
|| ||||||| ||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1901 TAACAATGGTACGATTGCTGTTGCTAACCAAGTCTCTTGTCAAAGTCCAAACCAACCTAC 1960
Query 1683 TGGATTCTCTCAGTCTCAGCTTCAGCAGCAGTCAATGCTCCCTAGTGGTGCTAAAATGAT 1742
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1961 TGGATTCTCTCAGTCTCAGCTTCAGCAGCAGTCAATGCTCCCTACTGGTGCTAAAATGAC 2020
Query 1743 ACACCAGAACATAAATTC-AGTGGGGAATAAAGTCTCGTCTCAAATGACATCGTTTGCGC 1801
|||||||||||||||||| | |||||||||||| || |||||||||||||||||||||||
Sbjct 2021 ACACCAGAACATAAATTCTA-TGGGGAATAAAGGCTTGTCTCAAATGACATCGTTTGCGC 2079
Query 1802 AAGAAATGCAGTTTCAGCAGCAACTGGAATTGCATAACAGTAGCCAGTTACTAAGAAACC 1861
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 2080 AAGAAATGCAGTTTCAGCAGCAACTGGAAATGCATAACAGTAGCCAGTTATTAAGAAACC 2139
Query 1862 AGCAAGAACAGTCCTCTCTGCATTCATTAGAACAAAATCTGTCCCAAAATCCTCAGCAAC 1921
||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 2140 AGCAAGAACAGTCCTCTCTCCATTCATTACAACAAAATCTGTCCCAAAATCCTCAGCAAC 2199
Query 1922 TCCAAATGCAACAACAATCATCAAAACCAAGTCCGTCACAAcagcttcagttgcagctac 1981
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2200 TCCAAATGCAACAACAATCATCAAAACCAAGTCCTTCACAACAGCTTCAGTTGCAGCTAC 2259
Query 1982 tgcagaagctacagcagcagcaacagcagcagTCGGTTCCTCCAGTAAGCTCATCCTTAC 2041
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2260 TGCAGAAGCTACAGCAGCAGCAACAGCAGCAGTCGATTCCTCCAGTAAGCTCATCCTTAC 2319
Query 2042 AGCCACAATTATCCGTGTTGCAGCAGACACAAAGCCATCAATTGCAACAACTTCTGTCAT 2101
||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2320 AGCCACAATTATCAGCGTTGCAGCAGACACAAAGCCATCAATTGCAACAACTTCTGTCGT 2379
Query 2102 CGCAGAATCAACAGCCCTTGGCACATGGTAATAACAGCTTCTCAGCTTCAACTTTCATGC 2161
| || |||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2380 CTCAAAATCAACAGCCCTTGGCACATGGTAATAACAGCTTCCCAGCTTCAACTTTCATGC 2439
Query 2162 AGCCTCCACAGTTTCAGGTGAGTCATCAGCAGCAAGAACAGATGAACAACAAAAATCTAG 2221
||||||||||| |||||||||||| ||||||||||| |||||||| ||||||||||| |
Sbjct 2440 AGCCTCCACAGATTCAGGTGAGTCCTCAGCAGCAAGGACAGATGAGTAACAAAAATCTTG 2499
Query 2222 TAGCCGCCGGACA-ATCACATTCTGGTCACACAGATGGAGAAGCTCCTTCGTGTTCAACC 2280
||||||| ||| | |||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 2500 TAGCCGCTGGA-AGATCACATTCTGGCCACACAGATGGAGAAGCTCCTTCTTGTTCAACC 2558
Query 2281 TCACCTTCCGCCAATAACACCGGACATGATAATGTTTCACCGACGAATTTCCTGAGCAGA 2340
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 2559 TCACCTTCCGCCAATAACACGGGACATGATAATGTTTCACCGACAAATTTCCTGAGCAGA 2618
Query 2341 AATCAACAACAAGGACAAGCTGCATCTGTATCTGCATCTGATTCAGTCTTTGATCGTGCA 2400
|||||||| |||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 2619 AATCAACAGCAAGGACAAGCTGCATCTGTATCTGCATCTGATTCAGTCTTTGAGCGCGCA 2678
Query 2401 AGCAATCCGGTCCAAGAGCATTATACAAAAACCGAGAGCCGGTTCAATCAAGGCATGGTA 2460
||||||||||||||||||| |||||||||||| ||||||||| ||| |||||||||| |
Sbjct 2679 AGCAATCCGGTCCAAGAGCTTTATACAAAAACTGAGAGCCGGATCAGTCAAGGCATGATG 2738
Query 2461 AATTTGAAGAGTGGTGGTGAACAGTTCAGATTTAAAGGTGCGGTAACAGATCAAATCGAT 2520
||| ||||||||| ||||||||| |||||||||||| | |||||||||||||||||||||
Sbjct 2739 AATATGAAGAGTGCTGGTGAACATTTCAGATTTAAAAGCGCGGTAACAGATCAAATCGAT 2798
Query 2521 GTATCCACAGCGGGAGCGACGTATTGTCCTGATGTTGTTGGCCCTGCACAGCAGCAACAG 2580
||||||||||||||| ||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 2799 GTATCCACAGCGGGAACGACGTACTGTCCTGATGTTGTTGGCCCTGTACAGCAGCAACAA 2858
Query 2581 ACTTTCCCACTACCATCATTTGGTTTTGATGGAGACTGCCAATCTCATCATCCAAGAAAC 2640
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2859 ACTTTCCCACTACCATCATTTGGTTTTGATGGAGACTGCCAATCTCATCATCCAAGAAAC 2918
Query 2641 AACTTAGCTTTCCCTGGTAATCTCGAAGCCGTAACCTCTGA-CGCTCTCTATTCTCAAAA 2699
||||||||||||||||||||||||||||||||||| ||||| | | ||||||||||||||
Sbjct 2919 AACTTAGCTTTCCCTGGTAATCTCGAAGCCGTAACTTCTGATC-CACTCTATTCTCAAAA 2977
Query 2700 GGACTTTCAAAACTTGGTTCCCAACTATGGCAACGCACCAAGAGACATTGAGACGGAGCT 2759
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2978 GGACTTTCAAAACTTGGTTCCCAACTATGGCAACACACCAAGAGACATTGAGACGGAGCT 3037
Query 2760 ATCCAGTGCTGCAATCAGTTCTCAGTCATTTGGTATTCCCAGCATTCCCTTTAAGTCCGG 2819
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 3038 GTCCAGTGCTGCAATCAGTTCTCAGTCATTTGGTATTCCCAGCATTCCCTTTAAGCCCGG 3097
Query 2820 ATGTTCAAATGAGGTTGGTGGCATCAATGATTCCGGCATCATGAATGGTGGAGGACTGTG 2879
|||||||||||||||||| |||||||||||||| || |||||||||||||||||||||||
Sbjct 3098 ATGTTCAAATGAGGTTGGCGGCATCAATGATTCAGGAATCATGAATGGTGGAGGACTGTG 3157
Query 2880 GCCCAATCAGACTCAACGAATGCGAACATATACAAAGGTTCAAAAACGAGGATCAGTAGG 2939
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 3158 GCCCAATCAGACTCAACGAATGCGAACATATACAAAGGTTCAAAAACGAGGGTCAGTAGG 3217
Query 2940 AAGATCAATAGATGTTACCCGTTATAGCGGCTATGATGAACTTAGGCATGACTTAGCAAG 2999
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 3218 TAGATCAATAGATGTTACCCGTTATAGCGGCTATGATGAACTTAGGCATGACTTAGCGAG 3277
Query 3000 AATGTTTGGCATCGAAGGACAGCTTGAAGATCCGCTAACCTCTGACTGGAAACTCGTATA 3059
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||
Sbjct 3278 AATGTTTGGCATCGAAGGACAGCTCGAAGATCCGCTAACCTCTGATTGGAAACTCGTCTA 3337
Query 3060 CACCGATCACGAAAACGATATTTTACTCGTTGGTGATGATCCTTGGGAAGAGTTTGTGAA 3119
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 3338 CACCGATCACGAAAACGATATTTTACTAGTTGGTGATGATCCTTGGGAAGAGTTTGTGAA 3397
Query 3120 CTGCGTGCAGAACATAAAGATACTATCATCAGCAGAAGTCCAGCAAATGAGCTTAGACGG 3179
|||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 3398 CTGCGTGCAGAACATAAAGATACTATCATCAGTAGAAGTTCAGCAAATGAGCTTAGACGG 3457
Query 3180 AGATCTTGCAGCTATCCCAACCACAAACCAAGCCTGCAGCGAAACAGACAGCGGAAATGC 3239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3458 AGATCTTGCAGCTATCCCAACCACAAACCAAGCCTGCAGCGAAACAGACAGCGGAAATGC 3517
Query 3240 TTGGAAAGTACACTATGAAGACACTTCTGCTGCAGCTTCATTCAACAGATAG 3291
||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 3518 TTGGAAAGTACACTATGAAGACACTTCTGCTGCAGCTTCTTTCAACAGATAG 3569
Score = 1090 bits (590), Expect = 0.0
Identities = 628/646 (97%), Gaps = 3/646 (0%)
Strand=Plus/Plus
Query 1 ATGAAGGCTCCATCAAATGGGTTTCTTCCCACTTCCAACGAAGGTGAGAAGAAACCAATC 60
||||| |||||||||||||| |||||||| | |||||||||||| |||||||| ||||||
Sbjct 309 ATGAAAGCTCCATCAAATGGATTTCTTCCAAGTTCCAACGAAGGAGAGAAGAAGCCAATC 368
Query 61 AATTCTCAACTATGGCACGCTTGTGCAGGGCCTTTAGTTTCATTGCCTCCTGTGGGAAGT 120
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 369 AATTCTCAACTATGGCACGCTTGTGCAGGGCCTTTAGTTTCATTACCTCCTGTGGGAAGT 428
Query 121 CTTGTGGTTTACTTTCCTCAAGGACATAGCGAGCAAGTTGCAGCATCGATGCAGAAGCAA 180
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 429 CTTGTGGTTTACTTCCCTCAAGGACACAGCGAGCAAGTTGCAGCATCGATGCAGAAGCAA 488
Query 181 ACTGATTTTATACCAAATTACCCAAATCTTCCTTCTAAGCTGATTTGCTTGCTTCACAGT 240
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 489 ACAGATTTTATACCAAATTACCCAAATCTTCCTTCTAAGCTGATTTGCTTGCTTCACAGT 548
Query 241 GTTACATTACATGCTGATACCGAGACCGATGAAGTCTATGCACAAATGACTCTTCAACCT 300
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 549 GTTACATTACATGCTGATACCGAAACAGATGAAGTCTATGCACAAATGACTCTTCAACCT 608
Query 301 GTGAATAAGTATGATAGAGAAGCATTGCTAGCTTCTGATATGGGCCTGAAGCTAAACAGA 360
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 609 GTGAATAAGTATGATAGAGAAGCATTGCTAGCTTCTGATATGGGCTTGAAGCTAAACAGA 668
Query 361 CAACCTACTGAGtttttttGCAAGACTCTTACTGCAAGTGACACAAGCACTCATGGTGGA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 669 CAACCTACTGAGTTTTTTTGCAAGACTCTTACTGCAAGTGACACAAGCACTCATGGTGGA 728
Query 421 TTCTCTGTACCGCGTCGTGCAGCTGAGAAGATATTCCCTCCTCTTGATTTCTCGATGCAA 480
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 729 TTCTCTGTACCGCGTCGTGCAGCTGAGAAAATATTCCCTCCTCTTGATTTCTCGATGCAA 788
Query 481 CCACCTGCGCAAGAGATTGTAGCTAAAGATTTACATGATACTACATGGACTTTCAGACAT 540
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 789 CCGCCTGCGCAAGAGATTGTAGCTAAAGATTTACATGATACTACATGGACTTTCAGACAT 848
Query 541 ATCTATCGAGGCCAACCAAAAAGACACTTGCTTACCACAGGTTGGAGCGTTTTTGTTAGC 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 849 ATCTATCGAGGCCAACCAAAAAGACACTTGCTTACCACAGGTTGGAGCGTTTTTGTTAGC 908
Query 601 ACAAAGAGACT-TTTCGCGGGTGATTCAGTTTTGTTTGTAAG-GAT 644
||||||||||| ||| |||||||||||||||||||||||||| |||
Sbjct 909 ACAAAGAGACTATTT-GCGGGTGATTCAGTTTTGTTTGTAAGAGAT 953
> AT5G20730.1 | Symbols: NPH4, MSG1, IAA21, ARF7, TIR5, BIP | Transcriptional
factor B3 family protein / auxin-responsive factor
AUX/IAA-related | chr5:7016470-7022113 REVERSE LENGTH=4341
Length=4341
Score = 377 bits (204), Expect = 3e-103
Identities = 505/648 (78%), Gaps = 29/648 (4%)
Strand=Plus/Plus
Query 682 AGAGATGAGAAA-TCACAGCTGATGTTGGGTATAAGACGTGCAAATAGACAAAC-TCC-G 738
||||||| |||| | || || ||||||| ||||||||||||||||||| ||| || |
Sbjct 1252 AGAGATG-GAAAGGCGCAACTTCTGTTGGGGATAAGACGTGCAAATAGAC-AACAGCCTG 1309
Query 739 ACTCTTTCCTCATCGGTCATATCCAGCGACAGTATGCACATTGGGA-TTCTTGCAGCTGC 797
| ||||| ||||| || ||||| || || || ||||||| | ||| |||||||||||||
Sbjct 1310 -CACTTTCTTCATCTGTAATATCAAGTGATAGCATGCACA-TCGGAGTTCTTGCAGCTGC 1367
Query 798 AGCTCATGCTAATGCCAATAGTAGCCCTTTTACCATCTTCTTCAATCCAAGG-G--CAAG 854
||||||||||||||| |||| || ||||| ||||| |||| ||| || ||| | | |
Sbjct 1368 AGCTCATGCTAATGCTAATAACAGTCCTTTCACCATTTTCTACAACCCGAGGTGGGCT-G 1426
Query 855 -TCCTTCAGAGTTTATTGTTCCTTTAGCCAAATACAACAAAGCCTTGTACGCTCAAGTAT 913
|||| | |||||| | |||||||||||||| || | |||||| ||||||||||||| |
Sbjct 1427 CTCCTGCTGAGTTTGTGGTTCCTTTAGCCAAGTATACCAAAGCGATGTACGCTCAAGTTT 1486
Query 914 CTCTAGGAATGAGATTCCGGATGATGTTTGAGACCGAGGATTGTGGGGTTCG-CAGATAT 972
| || || ||| | || | ||||| |||||||| || || ||||| ||||| | | |||
Sbjct 1487 CCCTCGGTATGCGGTTTAGAATGATATTTGAGACTGAAGAATGTGGAGTTCGTCGG-TAT 1545
Query 973 ATGGGTACAGTCACTGGTATTAGTGATCTGGACCCTGTAAGATGGAAAGGCTCACAATGG 1032
||||||||||| || ||||| |||||||| || || || ||||||||| ||| || |||
Sbjct 1546 ATGGGTACAGTTACCGGTATCAGTGATCTTGATCCAGTGAGATGGAAAAACTCTCAGTGG 1605
Query 1033 CGTAATCTTCAGGTAGGATGGGATGAATCAACAGCTGGAGATAGGCCAAGCCGAGTATCT 1092
|| ||||||||| | ||||||||||| ||| | ||||| |||||||| || ||||| ||
Sbjct 1606 CGGAATCTTCAGATTGGATGGGATGAGTCAGCTGCTGGTGATAGGCCCAGTCGAGTTTC- 1664
Query 1093 A-TATGGGAAATCGAACCCGTCATAACTCCTTTTTATATATGTCCTCCTCCATTTTTCAG 1151
| | ||||| || ||||| || |||||||||| || ||||||||||||||||||||| |
Sbjct 1665 AGTTTGGGACATTGAACCGGTTTTAACTCCTTTCTACATATGTCCTCCTCCATTTTTCCG 1724
Query 1152 ACCTAAG-TACCCGAGG-CAACCGGGGATGCCAGATGATGAGT-TGGACATGGAAAATGC 1208
|||| | | | || ||||| || ||||||||||||||| || ||||||| |||
Sbjct 1725 ACCTC-GCTTTTCT-GGACAACCTGGAATGCCAGATGATGAGACTG-ACATGGAGTCTGC 1781
Query 1209 TTTCAAAAGAGCAATGCCTTGGATGGGAGA-TGATTTTGG-GATGAAGGACGCG-CAGAG 1265
| || ||||||||||| ||| | | | | | | || | |||||| ||| | | |||
Sbjct 1782 ACTGAAGAGAGCAATGCCATGGCTTG-ATAAT-AGCTTAGAGATGAAAGACCCTTC-GAG 1838
Query 1266 TTCGATGTTCCCTGGTTTAAGTCTAGTTCAATGGATGAGTATGCAGCA 1313
| | || || |||||| | ||| ||||||| ||||||| |||||||||
Sbjct 1839 TACTATCTTTCCTGGTCTGAGTTTAGTTCAGTGGATGAATATGCAGCA 1886
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 163744901952
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5