BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg335233
Length=2961
Score E
Sequences producing significant alignments: (Bits) Value
AT1G19835.1 | Symbols: | Plant protein of unknown function (DU... 4499 0.0
> AT1G19835.1 | Symbols: | Plant protein of unknown function (DUF869)
| chr1:6855952-6860332 REVERSE LENGTH=3444
Length=3444
Score = 4499 bits (2436), Expect = 0.0
Identities = 2794/2967 (94%), Gaps = 24/2967 (1%)
Strand=Plus/Plus
Query 1 ATGGATCGTAAGAGTTGGCCATGGAAGAAGAAATCCTCTGAGAAAGCAGCTACTGTGACA 60
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 236 ATGGATCGTAAGAGTTGGCCATGGAAGAAGAAATCCTCTGAGAAAACAGCTACTGTCACA 295
Query 61 GAAGTTGTTGATCAGGAAAATGGGAAGAAGCCGAGTTATATCCAGATCTCATTTGATCAA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 296 GAAGTTGTTGATCAGGAAAATGGGAAGAAGCCGAGTTATATCCAGATCTCATTTGATCAA 355
Query 121 TACACGAATCTAAATGGTTTAAAAGATGAAGTTAAGAACTATGAAGAAAAAGTTGTAAAG 180
|||||||||||||||||||||||||||||||| |||| ||| |||||||||||| ||||
Sbjct 356 TACACGAATCTAAATGGTTTAAAAGATGAAGTCAAGAGCTACGAAGAAAAAGTTACAAAG 415
Query 181 CTTGAAGATCAGATCAAGGATTTGGATTTGAAGCTATCTACAGCAAATGCAGATATTGTA 240
||||| ||||||||||| |||||||||||||||||||| ||||| |||||||||||||||
Sbjct 416 CTTGAGGATCAGATCAAAGATTTGGATTTGAAGCTATCAACAGCTAATGCAGATATTGTA 475
Query 241 GCCAAAG-AGGTTTTAGTCAAACAACATTCCAAAGTTGCTGAAGAAGCTGTCACAGGTTG 299
|| |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 476 GC-AAAGGAGGTTTTAGTCAAACAACACTCCAAAGTTGCTGAAGAAGCTGTCACAGGTTG 534
Query 300 GGAAAAAGCTGAAGCAGAGGCATCGGCTTTGAAAACACATCTTGAAACCGTTACACTCGC 359
|||||||||||||||||| ||||| ||||||||||||||||| |||||| |||| |||||
Sbjct 535 GGAAAAAGCTGAAGCAGAAGCATCAGCTTTGAAAACACATCTCGAAACCATTACTCTCGC 594
Query 360 GAAGCTCACTGTTGAAGATCGAGCAGCGCATTTAGATGGCGCGCTAAAGGAGTGTATGAG 419
||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct 595 AAAGCTCACTGTCGAAGATCGAGCAGCGCATTTAGATGGAGCGTTAAAGGAGTGTATGAG 654
Query 420 GCAGATAAGGAGTTTAAAGGAAGAGAATGAACAAAAGCTGCATGATGTTATTGCTACTAA 479
|| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 655 ACAAATAAGGAGTTTAAAGGAAGAGAATGAACAGAAGCTGCATGATGTTATCGCTACTAA 714
Query 480 AACCAACCAAATGGATAATCTTAGAGCTGAGTTTGAGTCTAGGATTGGCGAATACGAGGA 539
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 715 AACCAACCAAATGGACAATCTTAGAGCTGAGTTTGAGTCTAGGATTGGGGAATACGAGGA 774
Query 540 AGAACTTCTTCGGTGTGGAGCTGAGAATGACGCGCTTTCGAGATCGTTGCAAGAGCGGTC 599
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 775 AGAACTGCTTCGGTGTGGTGCTGAGAATGACGCGCTTTCGAGATCGTTGCAAGAGAGGTC 834
Query 600 AAACATGCTTATGAGAATAAGTGAAGAGAAATCTCAAGCAGAGTCTGAGATTGAGCATCT 659
|||||||| ||||| |||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 835 TAACATGCTAATGAGGATAAGTGAGGAGAAGTCTCAAGCAGAGTCTGAGATTGAGCATCT 894
Query 660 TAAGAACAATATAGAGTCTTGTGAAAGGGAGATTAATACTCTCAAGTATGAAACTCATGT 719
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 895 TAAGAACAATATAGAGTCTTGTGAAAGGGAGATAAATACTCTCAAGTATGAAACTCATGT 954
Query 720 GATTACCAAAGAGTTGGAAATCCGTAACGAGGAAAAGAATATGAGCATGAGATCCGCGGA 779
|||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||
Sbjct 955 GATTACCAAAGAGTTGGAGATCCGTAACGAGGAAAAGAATATGAGTATGAGATCTGCGGA 1014
Query 780 AGCCGCAAACAAGCAGCATTTGGAAGGTGTCAAGAAGATTGCAAAGTTGGAAGCTGAGTG 839
||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1015 AGCGGCGAATAAGCAGCATTTGGAAGGTGTCAAGAAGATTGCAAAGTTGGAAGCTGAGTG 1074
Query 840 TCAAAGATTACGTACTCTGGTGAGAAAGAAACTTCCGGGTCCTGCAGCACTTGCACAGAT 899
|||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 1075 TCAAAGATTACGAACTCTTGTGAGAAAGAAACTTCCTGGTCCTGCAGCACTTGCACAGAT 1134
Query 900 GAAAATGGAGGTTGAGAGTTTAGGATATGGAGATCATCGACAAGATCATCGACAAAGGAG 959
|||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| ||
Sbjct 1135 GAAAATGGAGGTTGAGAGTTTAGGATTTGGAGATCATCGTCAAGATCATCGACAAAGAAG 1194
Query 960 GTCACCGGTCAGACCATCTAGTCCTCTTATGTCTCCAATGTCACACATGTCTCAGGTTTC 1019
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1195 GTCACCGGTTAGACCATCTAGTCCTCTTATGTCTCCAATGTCACACATGTCTCAGGTTTC 1254
Query 1020 CGAGTTTTCGCTTGACAATATGCAGAAGTTCCATAAAGAAAATGATTTGCTTACAGAGCG 1079
||||| || |||||||||||||| ||||||||||||||||| ||||||||||| ||| |
Sbjct 1255 TGAGTTCTCACTTGACAATATGCAAAAGTTCCATAAAGAAAACGATTTGCTTACTGAGAG 1314
Query 1080 GTTACT-GACTATGGAAGAAGAAACAAAGATGCTGAAAGAAGCTTTGGCGAAGCGTAACA 1138
| |||| | ||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 1315 GCTACTTG-CTATGGAAGAAGAAACAAAGATGCTTAAAGAAGCTTTGGCTAAGCGTAACA 1373
Query 1139 GCGAGCTTCAAGTGTCGAGAAACCTCTGTGCTAAGACAGCTAACAGGCTTCAAACCTTGG 1198
|||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||
Sbjct 1374 GCGAGCTTCAAGTGTCGAGAAATCTCTGTGCTAAGACAGCTAATAGGCTACAAACCTTGG 1433
Query 1199 AAGCTCAAATGATGAATAAAAGTCCAACGAA-ACGCGGCTTTGAAATGCCAGCTGAAATC 1257
||||||||||||||| |||||||||||| || | | || |||||||||||||||||||||
Sbjct 1434 AAGCTCAAATGATGAGTAAAAGTCCAACCAAGA-GAGGTTTTGAAATGCCAGCTGAAATC 1492
Query 1258 TTCTCTCGTCAAAATGGTAGTAATTCTCCTAGTATGGCTTCAATGTCTGAGGACGGAAAC 1317
|| ||||||||||||| ||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 1493 TTTTCTCGTCAAAATGCTAGTAATCCTCCTAGTATGGCTTCAATGTCTGAGGATGGAAAC 1552
Query 1318 GAAGATGCTAGAAGCGTCGCAGGCTCTTTGATGTCTGAACTCTCTCAATCCAACAAGGAT 1377
||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||
Sbjct 1553 GAAGATGCTAGAAGCGTTGCTGGCTCTTTGATGTCTGAACTCTCTCAATCTAACAAGGAT 1612
Query 1378 AAAAACAATGCGAAGATCAAGAAGACCGAGAGTGCTAACCAGTTGGAGCTTATGGATGAC 1437
||| ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1613 AAAGCCAACGCGAAGATCAAGAAGACCGAGAGTGCTAACCAGTTGGAGCTGATGGATGAT 1672
Query 1438 TTTCTTGAAATGGAAAAGCTAGCTTGTCTACCAAATGGCTCAAATGCAAATGGTACGAAG 1497
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |
Sbjct 1673 TTTCTTGAAATGGAAAAGCTAGCTTGTCTACCAAATGGCTCAAACGCAAATGGTTCGACG 1732
Query 1498 AATCACTCAAGTGCTGATTCCGATGGTGAGATTCTACCAGCGACGCAACTGAAGAAAAGA 1557
|||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||||
Sbjct 1733 GATCACTCAAGTGCTGATTCCGATGCTGAGATTCCACCAGCGACTCAACTGAAGAAAAGA 1792
Query 1558 ATCTCCAATGTGCTTCAGTCTCTCCCCAAAGATGCTGCATTTGAGAAGATTTTGGCAGAG 1617
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1793 ATCTCCAATGTGCTTCAGTCTCTCCCTAAAGATGCTGCATTTGAGAAGATTTTGGCAGAG 1852
Query 1618 ATACAATGTGCAGTTAAAGATGCAGGTGTTAAGCTACCTTCCAAGTGTCATGGAGCTAAT 1677
||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||
Sbjct 1853 ATACAATGTGCAGTTAAAGATGCAGGTGTTAAGCTGCCTTCTAAGAGTCATGGAGCTAAT 1912
Query 1678 TTGAACGGTGTTACAGAAGAAAAGGAGATAGCAATGTCAAATGAGACCACAGAGGAAAAA 1737
||||||||| ||||||||||||||| |||||| |||||||||||||| ||||||||||||
Sbjct 1913 TTGAACGGTCTTACAGAAGAAAAGGTGATAGCCATGTCAAATGAGACTACAGAGGAAAAA 1972
Query 1738 GTTACCATTGTCGAGGTAATAACCCAAGAATTGGCTGATGCTCTTTCTCAGATATATCAG 1797
||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |||
Sbjct 1973 GTTACCATTGTCGAGGTAATAACACAAGAATTGTCTGATGCTCTTTCTCAGATATACCAG 2032
Query 1798 TTTGTTTCCTATCTTTCAAAGGAAGCAACGGCGTGTCAGGACACGTTTTCTGAAAACAGA 1857
|||||| ||||||||||||||||||||||||||||| | |||| ||||||
Sbjct 2033 TTTGTTACCTATCTTTCAAAGGAAGCAACGGCGTGT---------T---CTGAGAACAGA 2080
Query 1858 ACTTTCTCCCAAAAAGTTCAAGAATTCTCCGTCACATTCGAGAGAGTCTTGGCCAAGGAG 1917
||||||||||||||||||||||||||||| |||||||||| ||||||||| ||||||
Sbjct 2081 ACTTTCTCCCAAAAAGTTCAAGAATTCTCTACCACATTCGAGGGAGTCTTGGGCAAGGAA 2140
Query 1918 AAGACTTTGGTGGATTTTCTGTTTGATCTTTCGCGAGTTTTAGCCGAAGCTAGTGAACTA 1977
||||| ||||| ||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct 2141 AAGACATTGGTCGATTTTCTGTTTGATCTTTCGCGAGTTTTAGTCGAAGCTAGTGAGCTA 2200
Query 1978 AAGATCGATGTGGT-GGGATATC-ACACATCCACATTGGAGATTCACAGCCCAGATTGCA 2035
|||||||||||| | ||| | || ||||||||||| | |||||||||||||| |||||||
Sbjct 2201 AAGATCGATGTGCTAGGG-T-TCCACACATCCACAGTAGAGATTCACAGCCCGGATTGCA 2258
Query 2036 TCGATAAAGTCGCTCTGCCAGAAAACAAAGCACTTCAGAAAGATTCATCAGGTGAACATT 2095
| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 2259 TTGATAAAGTCGCTCTACCGGAAAACAAAGCACTTCAGAAAGATTCATCAGGTGAACATT 2318
Query 2096 ATCAGAATGGTTGTTCTCAGAGCTCAGATTCCGAGATTCCAGATGATTGCAACGGAACAT 2155
| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 2319 ACCAGAATGGTTGTTCTCAGAGCTCAGATTCTGAGATTCCGGATGATTGCAACGGAACAT 2378
Query 2156 CTGGCTATGAACCCAAGCTTGCAGCTAGTAATTTTTCATCAGAAGAGTTTGAAGGATTGA 2215
||||||||||||| ||||||||| || |||| ||| || |||| ||||||||||| ||||
Sbjct 2379 CTGGCTATGAACCAAAGCTTGCAACTTGTAAATTTACAACAGAGGAGTTTGAAGGTTTGA 2438
Query 2216 AACTCGAGAAAGAAAAAGCAGAGACCAACCTTGCAAGCTGTGAAGCAGATCTTGAAGTAA 2275
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 2439 AACTCGAGAAAGAAAAAGCAGAGAGCAACCTTGCAAGCTGTGAAGCAGATCTTGAAGCAA 2498
Query 2276 CTAAGACCAAACTACAAGAAACAGAGCAACTTCTTGCTGAAGTAAAATCAGACTTGGAAT 2335
|||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 2499 CTAAGACCAAACTACAAGAAACAGAGAAACTTCTTGCTGAAGTCAAATCAGACTTGGAAT 2558
Query 2336 CTGCTCAGAAGTCTAATGGCATGG-CTGAGACTCAGCTCAAATGCATGGTGGAATCATAT 2394
|||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||
Sbjct 2559 CTGCTCAGAAGTCTAATGGCATGGGC-GAGACTCAACTCAAATGCATGGTGGAATCATAT 2617
Query 2395 AGATCTCTTGAAACTAGATCATCGGAGCTGGAAATCGAGTTGACTTCTCTTAAAGGCAAG 2454
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2618 AGATCTCTTGAAACTAGATCATCGGAGCTGGAAATCGAGTTGACTTCTCTTAAAGGCAAG 2677
Query 2455 ATCGAAAACTTAGAAGACGAGCTTCACGGCGAGAAGGAAAACCACCGAGAAACTTTAGCC 2514
||||||||||||||||| |||||||||| |||||||||||| || |||||| ||||||||
Sbjct 2678 ATCGAAAACTTAGAAGATGAGCTTCACGACGAGAAGGAAAATCATCGAGAAGCTTTAGCC 2737
Query 2515 AAATGCCAAGAACTCGAGGAACAATTACAAAGGAACAACCAAAACTGCCCGAATTGCTCA 2574
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 2738 AAATGCCAAGAACTCGAGGAGCAATTACAAAGGAACAACCAAAACTGCCCGAATTGTTCA 2797
Query 2575 GTAACCGAAGCTGATCCTAAAAGCAAACAGGACAATGAACTAGCGGCTGCTGCAGAGAAG 2634
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2798 GTAATCGAAGATGATCCTAAAAGCAAACAGGACAATGAACTAGCGGCTGCTGCAGAGAAG 2857
Query 2635 CTAGCAGAGTGTCAAGAGACTATATTACTTCTCGGGAAGCAACTCAAATCCATGTGTCCT 2694
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2858 CTAGCAGAGTGTCAAGAGACTATATTACTTCTCGGGAAGCAACTCAAATCCATGTGTCCT 2917
Query 2695 CAAACAGAACAGGTTGCTTCTTCTCCAAGCCAAGAGCAACAAGCCCTAAACACTGAAGAA 2754
||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 2918 CAAACAGAACAGGTTGCTTCTTCTCCAAGCCAAGAACAACAAGCCCTAAACCCTGAAGAA 2977
Query 2755 GACGAATACGCAACTTCCACAAATCCTCAAGACAACAAATTGAGTTCGCCTTCAGACAAG 2814
|| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2978 GAGGAATACGCAACTTCCACAAATCCTCAAGACAGCAAATTGAGTTCGCCTTCAGACAAG 3037
Query 2815 GATACACCATCGATGACTACAATGAAATCTCCGGTAGCTTCGAAACATAGACACACGAAG 2874
|||||||||||||||| |||||||||||||||||| || |||||||||||||||||||||
Sbjct 3038 GATACACCATCGATGAATACAATGAAATCTCCGGTCGCGTCGAAACATAGACACACGAAG 3097
Query 2875 TCAAACTCGTCATCGTCCTCATCAGGACTTACCCCTGAGAAACACTCTAGAGGATTCAGC 2934
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 3098 TCGAACTCGTCATCGTCCTCATCAGGACTTACTCCTGAGAAACACTCTAGAGGATTCAGC 3157
Query 2935 AGGTTCTTCTCCACTAAAGCAAAGTAA 2961
|||||||||||||||||||||||||||
Sbjct 3158 AGGTTCTTCTCCACTAAAGCAAAGTAA 3184
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 147189810762
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5