BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg335313
Length=465
Score E
Sequences producing significant alignments: (Bits) Value
AT1G20657.1 | Symbols: | Pseudogene of AT3G61340; F-box family... 359 1e-98
> AT1G20657.1 | Symbols: | Pseudogene of AT3G61340; F-box family
protein | chr1:7161890-7163076 REVERSE LENGTH=1187
Length=1187
Score = 359 bits (194), Expect = 1e-98
Identities = 232/251 (92%), Gaps = 0/251 (0%)
Strand=Plus/Plus
Query 175 GAAGATGCCGAGAAACATCAATGGTCGAGTTATATCTACGTTTTGCCTCCTCCTTTGAAG 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 927 GAAGATGCCGAGAAACATCAATGGTCGAGTTATATCTACGTTTTGCCTCCTCCTTGGAAG 986
Query 235 AATATAATCGAAGAGGCAAAGTTACGATTTGTTGGAATGAGTGACACGGGTGATATTGTA 294
|||||||| || ||| | ||||||||||||||||||| |||||||||||| ||||||||
Sbjct 987 AATATAATTGAGGAGACCAAGTTACGATTTGTTGGAACGAGTGACACGGGGGATATTGTG 1046
Query 295 TTGTCGCCATACAATATATCTGACTCTTTCTACCTTCTCTACTACAATCCCGAGAGGAAC 354
|||||||||| |||||| || ||||||||||||||||||||||||| ||||||||||||
Sbjct 1047 TTGTCGCCATGCAATATCTCCAACTCTTTCTACCTTCTCTACTACAACCCCGAGAGGAAC 1106
Query 355 ACTATCACTAGAGTTGAAATCCAAGGAATGGAAGCCTTTAAGCCTCATAAAGCTTACGCC 414
||||||| |||||||||||||||||| |||||||||| ||| |||||||| ||||||||
Sbjct 1107 GCTATCACGAGAGTTGAAATCCAAGGAGTGGAAGCCTTCAAGTCTCATAAATCTTACGCC 1166
Query 415 TTTCTAGACTA 425
|||||||||||
Sbjct 1167 TTTCTAGACTA 1177
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22103024680
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5