BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg335316
Length=621
Score E
Sequences producing significant alignments: (Bits) Value
AT1G20700.1 | Symbols: WOX14, ATWOX14 | WUSCHEL related homeobo... 944 0.0
> AT1G20700.1 | Symbols: WOX14, ATWOX14 | WUSCHEL related homeobox
14 | chr1:7182558-7184009 FORWARD LENGTH=779
Length=779
Score = 944 bits (511), Expect = 0.0
Identities = 584/620 (94%), Gaps = 2/620 (0%)
Strand=Plus/Plus
Query 3 GGAAAAGGAGAAAAGCAAATTGATAGAAGAGATGGAGAGGGAGA-CGCAAAACGGTGCGT 61
||||||||||||||||||| ||||| |||||||| || |||| | |||||||||||||
Sbjct 18 GGAAAAGGAGAAAAGCAAAGAAATAGAGGAGATGGATAGAGAGATC-CAAAACGGTGCGT 76
Query 62 TTAATGGGAGAGTGATGACGGAGGAGCAGATGGAGATCCTCCGTAAGCAGATCGCCGTTT 121
|| ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 77 ATAGTGGGAGAGTGATGACTGAGGAGCAGATGGAGATTCTCCGTAAGCAGATCGCCGTTT 136
Query 122 ACGCCGTTATTTGTGACCAGCTCGTCCTCCTCCACAACTCTCTTTCTTCTCACTATCCTC 181
||||||||||||||||||| |||||||||||||||||||| || |||||| || |||| |
Sbjct 137 ACGCCGTTATTTGTGACCAACTCGTCCTCCTCCACAACTCCCTCTCTTCTTACCATCCAC 196
Query 182 TCTCATCAGGAGTGAGGCCAATGGTTGGCGGATACTTTGATCCGATGGGGACATCGTCAA 241
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 197 TCTCATCAGGAGTGAGGCCAATGGTTGGCGGATACTTTGATCCGATGGGGGCATCGTCAA 256
Query 242 GTTCTCATAGGATATCGACTAGGCATCGGTGGACTCCGACTTCAACACAGCTGCAGATAC 301
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 257 GTTCTCATAGGATATCGACTAGGCATCGGTGGACTCCGACTTCAACACAGCTTCAGATAC 316
Query 302 TTGAGAGCATTTACGAGGAAGGAAGCGGAACACCGAATCGACGGAGGATTAGAGAGATTG 361
|||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |
Sbjct 317 TTGAGAGCATTTACGACGAAGGAAGTGGAACACCGAATCGACGGAGGATTAGAGAGATCG 376
Query 362 CAACGGAGCTGTCTGAACATGGAAAGATCACGGAGACAAATGTCTACAATTGGTTTCAGA 421
| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 377 CGACGGAGCTGTCTGAACATGGACAGATCACGGAGACAAATGTCTACAATTGGTTTCAAA 436
Query 422 ACCGGCGAGCTAGGTCCAAACGAAAGCAGCCTCAAACGACGACGGCTAATGGTCAGGCTG 481
||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 437 ACCGGCGAGCTCGGTCCAAACGAAAGCAGCCTCAAACGACGACAGCTAATGGTCAGGCTG 496
Query 482 ACGATGTGACCGTGACAGCGGAGGAAAGGAGGAGTTGTGGAGATTCAGGAGGATTAGAGT 541
|||||||| | |||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 497 ACGATGTGGCGGTGACAACGGAGGAAAGGAGGAGTTGTGGAGATTCAGGGGGATTAGAGT 556
Query 542 CTTATGAGCATCTACTCTTCCCAAGTCCTGATTTAGGGATTGAGCACTTGTTGAGTATAG 601
||||||||||| ||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 557 CTTATGAGCATATACTCTTCCCAAGTCCTGACTTAGGGATTGAGCATTTGTTGAGTATAG 616
Query 602 GGAAATTTATGGAGAGTTAA 621
||||||||||||||| ||||
Sbjct 617 GGAAATTTATGGAGACTTAA 636
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29939551612
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5