BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg335330
Length=1611
Score E
Sequences producing significant alignments: (Bits) Value
AT1G20860.1 | Symbols: PHT1;8 | phosphate transporter 1;8 | chr... 2446 0.0
AT1G76430.1 | Symbols: PHT1;9 | phosphate transporter 1;9 | chr... 878 0.0
> AT1G20860.1 | Symbols: PHT1;8 | phosphate transporter 1;8 | chr1:7254007-7258677
REVERSE LENGTH=1605
Length=1605
Score = 2446 bits (1324), Expect = 0.0
Identities = 1516/1608 (94%), Gaps = 15/1608 (1%)
Strand=Plus/Plus
Query 1 ATGCCGATAAAGGTATTGTCGTCGCTTGATGCAGCTCGAATACAATGGTACCATTTCAAA 60
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 1 ATGCCGATAAAGGTATTGTCGTCGCTTGATGTAGCTCGAACACAATGGTACCATTTCAAA 60
Query 61 GCGATCATAGTAGCAGGAATGGGTCTATTCACTGACGCATACGATCTTTTCTGCATCGCA 120
|||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 61 GCGATCATAGTAGCGGGAATGGGTCTATTCACCGACGCATACGATCTTTTCTGCATAGCA 120
Query 121 CCGGTCTTGAAAATGATTAGCCATGTTTATTACAACGGTGACTCAATCAACACGGCGGTT 180
|||||| ||||||||||||| |||||||||||||||||||||||||||||||| || |||
Sbjct 121 CCGGTCATGAAAATGATTAGTCATGTTTATTACAACGGTGACTCAATCAACACAGCCGTT 180
Query 181 CTTTCGACTTCTTACGCCATCGCTCTACTCGGCACAGCCACGGGTCAACTCCTCTTCGGT 240
||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 181 CTTTCAACTTCTTACGCCATCGCTTTACTCGGCACAGCCACGGGTCAACTAGTCTTCGGT 240
Query 241 TACCTCGGTGACCGAGTCGGTCGTCGCCGAGTCTACGGACTTTGTTTGATTATTATGATC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TACCTCGGTGACCGAGTCGGTCGTCGCCGAGTCTACGGACTTTGTTTGATTATTATGATC 300
Query 301 CTTAGCTCTTTTGGCTGTGGCTTTTCCGTGTGCACCACTCGTCGGTCTTGTGTTATGGTT 360
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CTTAGCTCCTTTGGTTGTGGCTTTTCCGTGTGCACCACTCGTCGGTCTTGTGTTATGGTT 360
Query 361 AGCCTCGGTTTTTTCCGGTT-TATTCTTGGTTTGGGTATCGGTGGTGATTACCCGCTTTC 419
|||||||||||||||||||| | |||||||||| ||||||||||||||||||||||| ||
Sbjct 361 AGCCTCGGTTTTTTCCGGTTCT-TTCTTGGTTTAGGTATCGGTGGTGATTACCCGCTCTC 419
Query 420 GGCTACCATTATGTCAGAGTTTGCTAATAAGAAGACACGTGGCGCGTTTATTGCTGCGGT 479
||||||||||||||| |||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 420 GGCTACCATTATGTCGGAGTTTGCTAATAAGAGGACACGTGGCGCGTTTATCGCTGCGGT 479
Query 480 GTTCTCCATGCAAGGGTTGGGGATTTTGGTTAGCTCTGCCGTGACCATGGCTGTTTGCGT 539
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 GTTTTCGATGCAAGGGTTGGGGATTTTGGTTAGCTCTGCCGTGACCATGGCTGTTTGCGT 539
Query 540 GGCGTTTAAGAGCGGTGGTGGTGGTTTGGAGGTGGATGCGGCGGCTCCGACAGAAGCCGA 599
|||||||||||| |||| |||||||||||||||||||||||||||||||| ||||| ||
Sbjct 540 GGCGTTTAAGAGAAGTGGCGGTGGTTTGGAGGTGGATGCGGCGGCTCCGACGGAAGCTGA 599
Query 600 CGTGGCGTGGAGACTTATACTTATGATCGGTGCTCTTCCTGCTGCATTGACATTCTATTG 659
| |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 600 CTTGGCCTGGAGACTTATACTTATGATCGGTGCTCTTCCTGCTGCATTGACGTTCTATTG 659
Query 660 GCGAATGCTGATGCCTGAAACCGCAAGATACACAGCACTTGTGGAAAACAATATCGTCCA 719
||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 660 GCGAATGTTGATGCCTGAAACCGCAAGATACACAGCACTTGTAGAAAACAATATCGTCCA 719
Query 720 AGCAGCAAAAGACATGCAAAGAGTCATGTCAATATCTCATATCTCCGACGAAGCCACGAC 779
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 720 AGCAGCAAAAGACATGCAAAGAGTCATGTCAAGATCTCATATCTCCGACGAAGCCACGAC 779
Query 780 GGAGCCAcctcctcctcctcctccGCCCCCTTCCTACAAACTCTTCTCCCGCTGCTTCTT 839
||| |||||||||||||| || ||| ||||||||||||||||||||||||||||||||
Sbjct 780 GGATCCACCTCCTCCTCCGCC---GCCACCTTCCTACAAACTCTTCTCCCGCTGCTTCTT 836
Query 840 CCGTCTCCATGGCCGCGACCTCTTCGCCGCCTCCTTTAATTGGTTCTTAATAGACATTGT 899
||| |||||||| |||||||||||||| |||||||||||||||||| || ||||||||||
Sbjct 837 CCGCCTCCATGGTCGCGACCTCTTCGCAGCCTCCTTTAATTGGTTCCTAGTAGACATTGT 896
Query 900 CTTCTACACAAGCAACCTCCTCCTCTCCCATATCTTCAGTCACTACTCCAACAAACCTTC 959
|||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||
Sbjct 897 CTTCTACACAAGCAACCTCCTCCTGTCCCATATCTTCAGTCATTACTCCAAGAAACCTTC 956
Query 960 TTCCTCCACCGCAGAAAACGTCTATGATGCAGCCTTCGAAGTGGCGGAATTAGGAGCCAT 1019
| || |||||||||||||| || |||||||| |||||||||||||||||||||||
Sbjct 957 --C----ACTGCAGAAAACGTCTACGACGCAGCCTTTGAAGTGGCGGAATTAGGAGCCAT 1010
Query 1020 CATTGCCGCTTGCTCAACCATTCCCGGTTATTGGTTCACAGTTTACTTCATCGACAAGAT 1079
||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1011 CATCGCTGCTTGCTCCACCATTCCCGGTTATTGGTTCACAGTTTACTTCATCGACAAGAT 1070
Query 1080 AGGTCGTGTCAAAATCCA-AGTTATGGGGTTTTTCTTCATGGCCGTTATTTATTTAGTTG 1138
|||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |
Sbjct 1071 AGGTCGTGTCAAAATCCAGA-TTATGGGGTTTTTCTTCATGGCCGTTATTTATTTAGTCG 1129
Query 1139 CTGGGATTCCGTACAGTTGGTATTGGTCAAAGCACGAGCAGAATAATAAAGGCTTTATGG 1198
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 1130 CTGGTATTCCGTACAGTTGGTATTGGTCAAAGCACGAGCATAATAATAAAGGCTTCATGG 1189
Query 1199 TTCTCTACGGTTTGATTTTCTTCTTTTGCAACTTTGGTCCCAACACTACAACTTTTATTA 1258
|||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1190 TTCTCTACGGTTTGGTTTTCTTCTTTTGCAATTTTGGTCCCAACACTACAACTTTTATTA 1249
Query 1259 TTCCCGCAGAGCTTTTTCCGGCTAGGTTTAGGTCTACTTGCCACGGGATCTCTGGCGCCG 1318
|||||||||||| ||| ||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 1250 TTCCCGCAGAGCATTTCCCGGCTAGGTTTAGGTCTACTTGTCACGGGATCTCTGGTGCCG 1309
Query 1319 CTGGTAAGCTTGGGGCTATTGTGGGCACTGTTGGGTTCTTGTGGGCTACCAAGAAGATGG 1378
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1310 CGGGTAAGCTTGGGGCTATTGTGGGCACTGTTGGGTTCTTGTGGGCTACCAAGAAGATGG 1369
Query 1379 AAGGCGATGATAAAAACCAGGTTTATACCGAAGTGAACCGTATGAGAGTTGCTTTCTTGA 1438
|| ||||||||||||||||| ||||| ||||||| |||||||||||| ||||||||||||
Sbjct 1370 AAAGCGATGATAAAAACCAGATTTATCCCGAAGTAAACCGTATGAGAATTGCTTTCTTGA 1429
Query 1439 TTCTTGGTGGCGTTTGTATTGCCGGAATCTTTGTGACGTATTTCTTCACTAAGGAAACTA 1498
|||||||||||||||| ||||| |||||||| ||||||||||||||||| ||||||||||
Sbjct 1430 TTCTTGGTGGCGTTTGCATTGCTGGAATCTTGGTGACGTATTTCTTCACCAAGGAAACTA 1489
Query 1499 TGGGAAGATCGTTAGAGGAGAACGAGCATGAACAAGATAACAATGATGAGATC-GAAGTT 1557
||||||||||||||||||||||||||||||| ||||||||||||| |||| || |||| |
Sbjct 1490 TGGGAAGATCGTTAGAGGAGAACGAGCATGACCAAGATAACAATGCTGAG-TCTGAAGAT 1548
Query 1558 GAGCCACAGATTGTTGACGGGCAATCCTCGGCCAGCACTTTGCTTCAG 1605
||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 1549 GAGCCACAGATTGTTGACGGGCAATCCTCCGTGAGCACTTTGCTTCAG 1596
> AT1G76430.1 | Symbols: PHT1;9 | phosphate transporter 1;9 | chr1:28678935-28681995
REVERSE LENGTH=1900
Length=1900
Score = 878 bits (475), Expect = 0.0
Identities = 1218/1564 (78%), Gaps = 102/1564 (7%)
Strand=Plus/Plus
Query 14 TATTGTCGTCGCTT-GATGCAGCTCGAATACAATGGTACCATTTCAAAGCGATCATAGTA 72
|||| ||| || || || ||||| | ||||| |||||||||||||||||||| |||||
Sbjct 138 TATTATCGGCG-TTAGACGCAGCGAGGATACAGTGGTACCATTTCAAAGCGATAATAGTC 196
Query 73 GCAGGAATGGGTCTATTCACTGACGCATACGATCTTTTCTGCATCGCACCGGTCTTGAAA 132
|| |||||||| || ||||| |||||||||||||||||||| || || ||| || |||||
Sbjct 197 GCCGGAATGGGACTTTTCACCGACGCATACGATCTTTTCTGTATAGCTCCGATCATGAAA 256
Query 133 ATGATTAGCCATGTTTATTACAACGGTGACTCAATC--AACACGGCGGTTCTTTCGACTT 190
||||| || || | |||||| || ||||||||| ||| | || |||| || ||||
Sbjct 257 ATGATAAGTCAAATATATTACCACAAAGACTCAATCGGAAC-C-GCTCTTCTCTCAACTT 314
Query 191 CTTACGCCATCGCTCTACTCGGCACAGCCACGGGTCAACTCCTCTTCGGTTACCTCGGTG 250
||||||| |||||||| || ||||| || ||||| ||| |||| |||||| | ||||
Sbjct 315 CTTACGCAATCGCTCTTCTTGGCACCGCGTTAGGTCAGCTCATCTTTGGTTACTTAGGTG 374
Query 251 ACCGAGTCGGTCGTCGCCGAGTCTACGGACTTTGTTTGATT-ATTATGATCCTTAGCTCT 309
|||||||||| ||||| |||||| |||||| || | || || ||| | |||||||
Sbjct 375 ACCGAGTCGGACGTCGTAAAGTCTATGGACTTAGTCT-CTTGATCATGGTGTTTAGCTCC 433
Query 310 TTTGGCTGTGGCTTTTCCGTGTGCACCACTCGTCGGTCTTGTGTTATGGTTAGCCTCGG- 368
||||| |||||||| || || ||||| ||||| || ||||||||||||||||| || ||
Sbjct 434 TTTGGTTGTGGCTTCTCTGTTTGCACGACTCGACGTTCTTGTGTTATGGTTAGTCTTGGA 493
Query 369 TTTTTTCCGGTTTATTCTTGG-TTTGGGTATCGGTGGTGATTACCCGCTTTCGGCTACCA 427
|| ||| | || ||||||| || || |||||||| ||||| || |||||||| || |
Sbjct 494 TTCTTT-AGATTCGTTCTTGGACTT-GGAATCGGTGGAGATTATCCTCTTTCGGCCACGA 551
Query 428 TTATGTCAGAGTTTGCTAATAAGAA-GACACGTGGCGCGTTTATTGCTGCGGTGTTCTCC 486
||||||| ||||||||||| || || ||| ||||| || ||||| ||||| ||||||||
Sbjct 552 TTATGTCGGAGTTTGCTAACAA-AAGGACGCGTGGAGCTTTTATCGCTGCCGTGTTCTCG 610
Query 487 ATGCAAGGGTTGGGGATTTTGGTTAGCTCTGCCGTGACCATGGCTGTTTGCGTGGCGTTT 546
||||||||||| ||||||||| | |||||||| ||||| |||| ||| ||| |||||||
Sbjct 611 ATGCAAGGGTTAGGGATTTTGATGAGCTCTGCTGTGACTATGGTTGTGTGCTTGGCGTTC 670
Query 547 AAGAGCGGT-G-GTGGTG-GTTTGGAG--G-TGGA--T-GC-------G-G-C---GGCT 585
|||| || | | | || | ||| |||| | | | | || | | | ||||
Sbjct 671 AAGAACGCTGGAGAGGGGAGTTCGGAGAAGACGAACGTGGCGGGGTTAGAGACTTTGGCT 730
Query 586 CCGACAGAAGCCGACGTGGCGTGGAGACTT-ATACTTATGATCGGTGCTCTTCCTGCTGC 644
||| | ||| | || | |||||||| || || ||||||||||| |||||||| || ||
Sbjct 731 CCGCCGGAATCGGATATAGCGTGGAG-GTTGATTCTTATGATCGGAGCTCTTCCCGCCGC 789
Query 645 ATTGACATTCTATTGGCGAATGCTGATGCCTGAAACCGCAAGATACACAGCACTT-GTGG 703
|| || || || ||||||||||| |||||||||||||| |||||||||||| || || |
Sbjct 790 GTTAACGTTTTACTGGCGAATGCTCATGCCTGAAACCGCCAGATACACAGCA-TTGGTTG 848
Query 704 AAAACAATATCGTCCAAGCAGCAAAAGACATGCAAAGAGTCATGTCAATATC--TCATAT 761
| |||||| | ||||||||||||||||||||||||||||||||||| |||| | ||||
Sbjct 849 AGAACAATGTAGTCCAAGCAGCAAAAGACATGCAAAGAGTCATGTCCGTATCAATGATAT 908
Query 762 CTCCGA---C-GAAGC--CA-CGA-CGGAGCCAcctcctcctcc-tcctccGCCCCCTTC 812
||| | | |||| || | | |||||| | | || || || || || | |
Sbjct 909 CTCAAATAACCGAAGATTCATC-ATCGGAGCTAGAACAACCACCGTCTTCTTCC---T-C 963
Query 813 CTACAAACTCTTCTCCCGCTGCTTCTTCCGTCTCCATGGCCGCGACCTCTTCGCCGCCTC 872
|||||||||||||| ||| | ||| || ||||||| || || ||||||||||| |||||
Sbjct 964 ATACAAACTCTTCTCTCGCCGTTTCCTCAGTCTCCACGGTCGAGACCTCTTCGCAGCCTC 1023
Query 873 CTTTAATTGGTTCTTAATAGACATTGTCTTCTACACAAGCAACCTCCTCCTCTCCCATAT 932
||||||||| || | ||| | |||||||| |||||||| ||||| ||||| || ||
Sbjct 1024 AGCCAATTGGTTCCTAGTGGACGTCGTCTTCTATACAAGCAATCTCCTTCTCTCTCAAAT 1083
Query 933 CTTCAGTCACTACTCCAACAAACCTTCTTCCTCCAC-CGCAGAAAACGTCTATGA-TGCA 990
||| | ||| |||||||||||| | | || || | || ||| |||||| || | |
Sbjct 1084 CTTTA---ACTTCTCCAACAAACC--C--C-TCAACTC-CACAAA-CGTCTACGACT-CT 1132
Query 991 GCCTTCGAAGTGGCGGAA--TTAGGAGCCATCATTGCCGCTTGCTCAACCATTCCC-GGT 1047
||||| ||||| || || || | |||||| | ||||||||||| ||||| ||| |||
Sbjct 1133 GCCTTTGAAGTAGCT-AAGCTT-GCAGCCATTGTAGCCGCTTGCTCCACCAT-CCCTGGT 1189
Query 1048 TATTGGTTCACAGTTTACTTCATCGACAAGATAGGTCGTGTCAAAATCCAAGTT-ATGGG 1106
|| |||||||| || || |||||||| || || ||| | ||||| || || | | |||||
Sbjct 1190 TACTGGTTCACGGTCTATTTCATCGATAAAATCGGTAGAGTCAAGATTCA-GATGATGGG 1248
Query 1107 GTTTTTC-TTCATGGCCGTTATTTATTTAGTTGCTGGGATTCCGTACAGTTGGTATTGGT 1165
||||||| || ||||| || |||| ||||| |||||||||||||| |||||||||||||
Sbjct 1249 GTTTTTCCTT-ATGGCGGTCGTTTACTTAGTCGCTGGGATTCCGTATAGTTGGTATTGGT 1307
Query 1166 CAAAGCACGAGCAGAATAATAAAGGCTTTATGGTTCTCTACGGTTTGATTTTCTTCTTTT 1225
| ||||| ||| ||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1308 CTAAGCATGAGAAGACTAATAAAGGCTTTATGGTTCTCTACGGATTGATTTTCTTCTTTA 1367
Query 1226 GCAACTTTGGTCCC-AACACTACAACTTTTATTATTCCCG-CAGAGCTTTTTCCGGCTAG 1283
|||||||||| ||| ||||| || || ||||| || |||| | |||||||||||||||||
Sbjct 1368 GCAACTTTGG-CCCTAACACGACGACGTTTATCAT-CCCGGCGGAGCTTTTTCCGGCTAG 1425
Query 1284 GTTTAGGTCTACTTGCCACGGGATCTCTGGCGCCGCTGGTAAGCTTGGGGCTATTGTGGG 1343
||||||||| || || |||||||| ||||| || || || ||| |||| || ||||| ||
Sbjct 1426 GTTTAGGTCCACGTGTCACGGGATATCTGGAGCTGCAGGGAAGTTTGGTGCGATTGTTGG 1485
Query 1344 CACTGTTGGGTTCTTGTGGGCTACCAAGAAGATGGAAGGCGATGATAAAA-ACCAGGTTT 1402
|||||| || ||||||||||| || || || | | |||| | | || |||||
Sbjct 1486 CACTGTCGGTTTCTTGTGGGCCAC---GA-GAC--AC--C-ATGA-AGAGGAC--GGTTT 1533
Query 1403 ATACC-GAAGTGAACCGTATGAGAGTTGC-TTTCTTGATTCTTGGTGGCGTTTGTATTGC 1460
| || || ||||| ||| ||||| | || ||| ||||| ||||| ||||||||||| ||
Sbjct 1534 -T-CCAGATGTGAAACGTGTGAGAATCGCGTTT-TTGATCCTTGGCGGCGTTTGTATCGC 1590
Query 1461 CGGAATCTTTGTGACGTATTTCTTCACTAAG-GAAACTATGGGAAGATCGTTAGAGGAGA 1519
||||| | || |||||||| ||||| | ||||||||||||||||||||||| ||||
Sbjct 1591 GGGAATGATCGTAACGTATTTGTTCACGC-GTGAAACTATGGGAAGATCGTTAGAAGAGA 1649
Query 1520 ACGA 1523
||||
Sbjct 1650 ACGA 1653
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79567863825
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5