BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg335341
Length=447
Score E
Sequences producing significant alignments: (Bits) Value
AT4G30620.1 | Symbols: | Uncharacterised BCR, YbaB family COG0... 353 7e-97
AT2G24020.1 | Symbols: | Uncharacterised BCR, YbaB family COG0... 254 7e-67
AT1G48920.1 | Symbols: ATNUC-L1, PARL1, NUC-L1 | nucleolin like... 102 3e-21
> AT4G30620.1 | Symbols: | Uncharacterised BCR, YbaB family COG0718
| chr4:14948586-14950072 REVERSE LENGTH=718
Length=718
Score = 353 bits (191), Expect = 7e-97
Identities = 210/219 (96%), Gaps = 1/219 (0%)
Strand=Plus/Plus
Query 109 AAA-GCAGGTATACTTGGTAACATGCAGAATTTGTATGAGACTGTGAAGAAAGCTCAAAT 167
||| ||||| || || |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 235 AAAGGCAGGAATTCTAGGTAACATGCAGAATTTGTATGAGACAGTGAAGAAAGCTCAAAT 294
Query 168 GGTTGTTCAAGTAGAGGCTGTTAGAGTGCAGAAGGAGCTTGCTGTTGCTGAATTTGATGG 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 295 GGTTGTTCAAGTAGAGGCTGTTAGAGTGCAGAAGGAGCTTGCTGTTGCTGAATTTGATGG 354
Query 228 TTATTGTGAAGGCGAGCTTGTCAAGGTTACATTATCAGGTAACCAGCAACCAATTCGCAC 287
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 TTATTGTCAAGGCGAGCTTGTCAAGGTTACATTATCAGGTAACCAGCAACCAATTCGCAC 414
Query 288 TGATATCACTGATGCAGCAATGGAATTAGGCTCCGAAAA 326
|||||||||||||||||||||||| ||||| || |||||
Sbjct 415 TGATATCACTGATGCAGCAATGGAGTTAGGTTCTGAAAA 453
> AT2G24020.1 | Symbols: | Uncharacterised BCR, YbaB family COG0718
| chr2:10217701-10219352 REVERSE LENGTH=800
Length=800
Score = 254 bits (137), Expect = 7e-67
Identities = 194/221 (88%), Gaps = 5/221 (2%)
Strand=Plus/Plus
Query 109 AAA-GCAGGTATACTTGGTAACATGCAGAATTTGTATGAGACTGTGAAGAAAGCTCAAAT 167
||| ||||| ||| ||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 284 AAAGGCAGGAATATTTGGTAATATGCAGAATATGTATGAGACTGTGAAGAAAGCTCAAAT 343
Query 168 GGTTGTTCAAGTAGAGGCTGTTA-GAGTGCAGAAGGAGCTT-GCTGTTGCTGAATTTGAT 225
|||||||||||| || ||||| | | || || || ||| || |||| || |||||||||
Sbjct 344 GGTTGTTCAAGTGGAAGCTGT-ACGTGTTCAAAAAGAG-TTAGCTGCCGCAGAATTTGAT 401
Query 226 GGTTATTGTGAAGGCGAGCTTGTCAAGGTTACATTATCAGGTAACCAGCAACCAATTCGC 285
|||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 402 GGTTATTGTGCAGGCGAGCTTGTCAAGGTTACGTTATCAGGTAACCAGCAACCAATCCGT 461
Query 286 ACTGATATCACTGATGCAGCAATGGAATTAGGCTCCGAAAA 326
|||||||| || || |||||||||||| |||| ||||||||
Sbjct 462 ACTGATATTACCGAGGCAGCAATGGAACTAGGTTCCGAAAA 502
> AT1G48920.1 | Symbols: ATNUC-L1, PARL1, NUC-L1 | nucleolin like
1 | chr1:18098095-18101623 FORWARD LENGTH=1966
Length=1966
Score = 102 bits (55), Expect = 3e-21
Identities = 63/67 (94%), Gaps = 0/67 (0%)
Strand=Plus/Plus
Query 330 TGCTGCTACCAAGGCTGCAAGTAGTTCAGATTCATCTGATGAAGATTCTGATGAGGAAAG 389
||||||| ||||||||||||| || ||||||||||| |||||||||||||||||||||||
Sbjct 712 TGCTGCTGCCAAGGCTGCAAGCAGCTCAGATTCATCAGATGAAGATTCTGATGAGGAAAG 771
Query 390 TGAAGAT 396
|||||||
Sbjct 772 TGAAGAT 778
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21263257827
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5