BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg335387 Length=840 Score E Sequences producing significant alignments: (Bits) Value AT1G21470.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 265 6e-70 > AT1G21470.1 | Symbols: | BEST Arabidopsis thaliana protein match is: CLPC homologue 1 (TAIR:AT5G50920.1); Has 326 Blast hits to 324 proteins in 95 species: Archae - 0; Bacteria - 130; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 129 (source: NCBI BLink). | chr1:7516709-7517179 REVERSE LENGTH=357 Length=357 Score = 265 bits (143), Expect = 6e-70 Identities = 168/180 (93%), Gaps = 1/180 (1%) Strand=Plus/Plus Query 18 CCTTTCCTCGCGAATCGCAGCTAGGAAGGCCGTGGCTTTAC-ATGAATCTCGGCGCAAAG 76 ||||||| | ||||||||||||||||||||| ||||||| |||||||||| |||||| Sbjct 32 CCTTTCCAAGTGAATCGCAGCTAGGAAGGCCGCAGCTTTACGGTGAATCTCGGGGCAAAG 91 Query 77 AGCTGCTGCTATTAAGAAATCCCTCAAGACTTTTCCTAAGGATGTTGTTTGAGCGGTTTA 136 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 92 AGCTGCTGCTATTAAGAAAACCCTCAAGACTTTTCCTAAGGATGTTGTTTGAGCGGTTTA 151 Query 137 CCGAGGAAGCAATGAAAGCTATAATGCTGGCCGAAGAGGATACCCGCAGGTTTGGCCACG 196 |||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||| Sbjct 152 CCGAGGAAACAATGAAAGCTATAATGCTGGCCAAAGAGGAAACCCGCAGGTTTGGCCACG 211 Score = 176 bits (95), Expect = 3e-43 Identities = 124/137 (91%), Gaps = 5/137 (4%) Strand=Plus/Plus Query 310 ATAAAAATAGTTGGGCAACGAGGATTTAATGAGCCTATTGAGGTTGAAAAGATGGAAACC 369 |||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||| | Sbjct 214 ATAAAAATAGATAGGCAACGAGGACTTAATGAGCCTATTGAGGTTGAAAAGATGGAAATC 273 Query 370 AGGGCAATAAATATCCCATTTGGACCCCGTGCTAAGCACATTCTGGAGTTATCATATGAA 429 ||||||||||||||||||||||||| |||||||||| ||||||| ||||| ||| | Sbjct 274 AGGGCAATAAATATCCCATTTGGACTCCGTGCTAAGTACATTCTTGAGTTGTCA---G-- 328 Query 430 GAAGCTCGGAAACTTGG 446 ||||||||||||||||| Sbjct 329 GAAGCTCGGAAACTTGG 345 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 40940829805 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5