BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg335387

Length=840
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G21470.1 | Symbols:  | BEST Arabidopsis thaliana protein mat...   265    6e-70


> AT1G21470.1 | Symbols:  | BEST Arabidopsis thaliana protein match 
is: CLPC homologue 1 (TAIR:AT5G50920.1); Has 326 Blast 
hits to 324 proteins in 95 species: Archae - 0; Bacteria - 130; 
Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other 
Eukaryotes - 129 (source: NCBI BLink). | chr1:7516709-7517179 
REVERSE LENGTH=357
Length=357

 Score =  265 bits (143),  Expect = 6e-70
 Identities = 168/180 (93%), Gaps = 1/180 (1%)
 Strand=Plus/Plus

Query  18   CCTTTCCTCGCGAATCGCAGCTAGGAAGGCCGTGGCTTTAC-ATGAATCTCGGCGCAAAG  76
            |||||||  | |||||||||||||||||||||  |||||||  |||||||||| ||||||
Sbjct  32   CCTTTCCAAGTGAATCGCAGCTAGGAAGGCCGCAGCTTTACGGTGAATCTCGGGGCAAAG  91

Query  77   AGCTGCTGCTATTAAGAAATCCCTCAAGACTTTTCCTAAGGATGTTGTTTGAGCGGTTTA  136
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  92   AGCTGCTGCTATTAAGAAAACCCTCAAGACTTTTCCTAAGGATGTTGTTTGAGCGGTTTA  151

Query  137  CCGAGGAAGCAATGAAAGCTATAATGCTGGCCGAAGAGGATACCCGCAGGTTTGGCCACG  196
            |||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct  152  CCGAGGAAACAATGAAAGCTATAATGCTGGCCAAAGAGGAAACCCGCAGGTTTGGCCACG  211


 Score =  176 bits (95),  Expect = 3e-43
 Identities = 124/137 (91%), Gaps = 5/137 (4%)
 Strand=Plus/Plus

Query  310  ATAAAAATAGTTGGGCAACGAGGATTTAATGAGCCTATTGAGGTTGAAAAGATGGAAACC  369
            |||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct  214  ATAAAAATAGATAGGCAACGAGGACTTAATGAGCCTATTGAGGTTGAAAAGATGGAAATC  273

Query  370  AGGGCAATAAATATCCCATTTGGACCCCGTGCTAAGCACATTCTGGAGTTATCATATGAA  429
            ||||||||||||||||||||||||| |||||||||| ||||||| ||||| |||   |  
Sbjct  274  AGGGCAATAAATATCCCATTTGGACTCCGTGCTAAGTACATTCTTGAGTTGTCA---G--  328

Query  430  GAAGCTCGGAAACTTGG  446
            |||||||||||||||||
Sbjct  329  GAAGCTCGGAAACTTGG  345



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 40940829805


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5