BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg335400
Length=1032
Score E
Sequences producing significant alignments: (Bits) Value
AT1G21620.1 | Symbols: APUM20, PUM20 | pumilio 20 | chr1:757912... 544 9e-154
> AT1G21620.1 | Symbols: APUM20, PUM20 | pumilio 20 | chr1:7579129-7580171
FORWARD LENGTH=927
Length=927
Score = 544 bits (294), Expect = 9e-154
Identities = 448/517 (87%), Gaps = 32/517 (6%)
Strand=Plus/Plus
Query 47 CACACCATCTCCGTTTTGCCGCCGCAAGAGAACCCATCTCAGAAGGGTATCCGGCGGTTG 106
||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 5 CACACCAGCTCCGTTTTGCCGCCGCAAGAGAACCCATCTCAGAAGAGTATCCGGCGGTTG 64
Query 107 CTCCTCCTCATCCACGTGGCTTCTCCGTCAAGTTTCCTCCTCCGGGATTCACCCCATCTC 166
||| ||||||||||||| || |||||||| ||||||||||||| ||||||| |||||||
Sbjct 65 CTCTTCCTCATCCACGTTGCATCTCCGTCGCGTTTCCTCCTCCGAGATTCACACCATCTC 124
Query 167 CGTCACCTTTAACT-A--ACTCATTCTTCACCGCCTTAACT-C-C-A-AA----A-ATG- 213
|||| ||||||||| | |||||||||| |||| |||||| | | | || | |||
Sbjct 125 CGTCGCCTTTAACTAATTACTCATTCTTGGCCGCATTAACTCCTCAAGAACTGGAGATGC 184
Query 214 G-ATG----TT-C--T--A----C--ATGATCTTAAAGTTAGACCAAAGAGAGCTTCAAA 257
| || || | | | | ||||||| ||||||||||||||| |||||||||
Sbjct 185 GTTTGCAAATTGCAATGGATGTCCAGATGATCTCGAAGTTAGACCAAAGAAAGCTTCAAA 244
Query 258 CGATGGCGTCATTGCTGACATCAGATTCCGATTACTTCTTGATGATCGCAAGAAACAAGA 317
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 245 CGATGGCGTCATTGCTGACATCAGATCCCGATTACTTCTTGATGATCGCAAGAAACATGA 304
Query 318 ACGGCTCCAAACGCA-ACAGAAACTTCTGGGGATAACAGATGACGTGGACACTTTATTCG 376
||||||||||||||| ||||||||||| || | |||||||||||||||| |||||||||
Sbjct 305 ACGGCTCCAAACGCATTCAGAAACTTCTCGGAAAAACAGATGACGTGGACGCTTTATTCG 364
Query 377 CCGCCACTATCTTGCGCCGCTTCCTCCACATCATCACCGACAAGTACGCATCGTACGTGG 436
||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 365 CCGCCGCTATCTTGCGCCGCTTCCTCCACATCATCACCGACAAGTACGCGTCGTACGTGG 424
Query 437 CGAGACGGGGGAT-AGCAGTTTTCAATAAGAAGAAGAAAGAAGCAATTTACGAGCGCATT 495
|||||||||||| | |||||||| |||||||||||||| ||||||| ||||||| ||||
Sbjct 425 TGAGACGGGGGATGA-CAGTTTTCGATAAGAAGAAGAAAAAAGCAATGTACGAGCACATT 483
Query 496 CTCCATTACGCGCTATACATAGCGCGTGACAAACACG 532
||||| |||||| ||||||||||||| |||||||
Sbjct 484 CTCCACTACGCGAGCCACATAGCGCGTGATAAACACG 520
Score = 529 bits (286), Expect = 2e-149
Identities = 346/374 (93%), Gaps = 8/374 (2%)
Strand=Plus/Plus
Query 616 GCTATTTTACTAAGCAACGATGCTTATGGGAACTTTGTGATACAACAG-GTGCTTAAACT 674
||| || ||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 520 GCTCTTGTACTAAGCAACGATGCTTATGGGAACTTTGTGATACAAC-GCGTGCTTAAACT 578
Query 675 GAATGACTTGCGTTGCAAGAACAACATCGTCGCTAGTCTACGTGGCCACTTTGTTGATCT 734
||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 579 GAATGACTTGCGTAGCAAGAACAACATCGTCGTTAGTCTACGTGGCCACTTTGTTGATCT 638
Query 735 CTCGATTCAGAGATATGGAAGCTACATTGTGAACCTGCTTTTGGAGACGGAGGAGTCAAT 794
|||| |||||| ||||||||||||| ||||| | | |||||||||||| ||||||||||
Sbjct 639 CTCGTTTCAGAAATATGGAAGCTACGTTGTGGATGTACTTTTGGAGACGAAGGAGTCAAT 698
Query 795 GGTTGTGGTGGTGGAGGAGCTT-T----TG-GAAGGAGGTAGGTTGATGAGGTTGACGAG 848
|||||||||||||||||||||| | || ||||||| || ||||||||||||| ||||
Sbjct 699 GGTTGTGGTGGTGGAGGAGCTTATGGAATGTGAAGGAGATATGTTGATGAGGTTGGCGAG 758
Query 849 GAATGTGTATGGGAATTTCGTGGTGTGCAAGGCACTGAGAGTCACGCAGAAGGAGATGGT 908
||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 759 GAATGAGTATGGGAATTTCTTGGTGTGCAAGGCACTGAGAGTCACGCAGAAGGAGATGGT 818
Query 909 TAGGACTGATCTGTATTGGGGTTTGGTGCATAAGCTCAAGCCTTTTCACAATCCCTTGCG 968
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 819 TAGGACTGATCTGTTTTGGGGTTTGGTGCATAAGCTCAAGCCTTTTCACAATCTCTTGCG 878
Query 969 TAGGTCTCGTGGAA 982
| ||||||||||||
Sbjct 879 TTGGTCTCGTGGAA 892
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50585786029
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5