BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg335432
Length=1029
Score E
Sequences producing significant alignments: (Bits) Value
AT1G21920.1 | Symbols: | Histone H3 K4-specific methyltransfer... 1140 0.0
AT1G77660.1 | Symbols: | Histone H3 K4-specific methyltransfer... 603 1e-171
> AT1G21920.1 | Symbols: | Histone H3 K4-specific methyltransferase
SET7/9 family protein | chr1:7704255-7706140 REVERSE LENGTH=1727
Length=1727
Score = 1140 bits (617), Expect = 0.0
Identities = 671/698 (96%), Gaps = 0/698 (0%)
Strand=Plus/Plus
Query 332 GGAAGTGTAATGGAAGTGGTGTGTATTACTATTTCGTGAGAGGAAGATATGAAGGAGATT 391
|||||||||| ||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 831 GGAAGTGTAACGGAAGTGGTGTGTATTACTATTTCGTGAGAGGACGTTATGAAGGAGATT 890
Query 392 GGATAGATGGGAGATATGATGGTCATGGGATTGAGAGTTGGGCTAGAGGAAGTAGATATA 451
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 891 GGCTAGATGGGAGATATGATGGTCATGGGATTGAGAGTTGGGCTAGAGGAAGTAGATATA 950
Query 452 AAGGTCAATATAGACAAGGTCTTAGACATGGTAATGGAGTTTATAGATTCTACACTGGTG 511
||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 951 AAGGTCAATATAGGCAAGGTCTTAGACATGGTTTTGGTGTTTATAGATTCTACACTGGTG 1010
Query 512 ATTGTTATGCTGGTGAATGGTTTAATGGTCAAAGCCATGGTTTTGGTGGTCAATCTTGTG 571
|||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1011 ATTGTTATGCTGGTGAGTGGTTTAATGGTCAAAGCCATGGTTTTGGTGTTCAATCTTGTT 1070
Query 572 CTGATGGTAGCTCTTATGTTGGTGAGTCTAGATTTGGTGTTAAACATGGTCTTGGTTCTT 631
|||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1071 CTGATGGTAGCTCTTACCTTGGTGAGTCTAGATTTGGTGTTAAGCATGGTCTTGGTTCTT 1130
Query 632 ACCATTTCAGAAATGGAGATAAGTATGCAGGAGAGTATTTTGGAGACAAGATTCATGGGT 691
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1131 ACCATTTCAGAAATGGAGATAAGTATGCAGGAGAGTACTTTGGAGACAAGATTCATGGGT 1190
Query 692 TTGGTGTGTATCGATTTGCTAATGGTCATTGTTATGAAGGAGCATGGCATGAAGGTCGTA 751
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 1191 TTGGTGTGTATCGATTTGCTAATGGACACTGTTATGAAGGAGCATGGCATGAAGGTCGTA 1250
Query 752 AGCAAGGGTTTGGTGCTTACTCGTTTAGAACTGGTGATGCTAAATCTGGTGAATGGGATT 811
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1251 AGCAAGGGTTTGGTGCTTACTCGTTTAGAAATGGTGATGCTAAATCTGGTGAATGGGATT 1310
Query 812 CTGGGAAGCTTGTAACTTCTCTTCCTCTTGCGAGTGAGCCAGTTTCAAGAGCGGTTCAGG 871
| ||| ||||| ||||| ||||||||| |||||||||||||||||||||| |||||||
Sbjct 1311 CAGGGGTTCTTGTGACTTCACTTCCTCTTACGAGTGAGCCAGTTTCAAGAGCTGTTCAGG 1370
Query 872 CGGCTCGAGAAACAGCGAATAAGGCAGTGAATCGGAGACGAGTAGATGAGCAGGTGAGCC 931
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1371 CGGCTCGAGAAACAGCGAATAAGGCAGTGAATCGGAGACGAGTAGATGAGCAGGTGAGCC 1430
Query 932 GAGCCGTGGCTGCAGCTAATAAGGCTGCTACGGCTGCAAGAGTGGCTGCTGTGAGAGCCG 991
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1431 GAGCTGTGGCTGCAGCTAATAAGGCTGCTACGGCTGCAAGAGTGGCTGCTGTGAGAGCCG 1490
Query 992 TTCAGAATCAAATGGATGGTAAATTTTGTCAAAGTTGA 1029
||||||||||||||||||||||||||||||||||||||
Sbjct 1491 TTCAGAATCAAATGGATGGTAAATTTTGTCAAAGTTGA 1528
Score = 339 bits (183), Expect = 4e-92
Identities = 212/226 (94%), Gaps = 2/226 (1%)
Strand=Plus/Plus
Query 1 ATGGAAAAACAGGCGAAGCTAACGAGGACACAGTCGTCGTTGCTCCGGTCATCGTCGAAT 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 275 ATGGAAAAACAGGCGAAGCTAACGAGGACACAGTCGTCGTTACTCCGGTCATCGTCGAAT 334
Query 61 CTTCGTTCGTCATTTCAAAGCTTATCTTCAATCGTCGAAGGCGAACAAGATCTagaagcc 120
|| |||||||||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 335 CTCCGTTCGTCATATCAAAGCTTATCTTCAATCGTCGAAGGCGAGCAAGATCTAGAAGCC 394
Query 121 ggagagaaagaagagaagcagagaagaaAACCACCTAAACCATTCGGTTCATCAAGTCCT 180
||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 395 GGAGAGAAAGAAGAGAAACAGAGAAGAAAACCACCTAAACCATTCGGTTCACCAAATCCT 454
Query 181 AAATCCGGTTTAACTCGGATT-AACCCCGGTTTAGCATTCACAATG 225
||| |||||||||| | || | || ||||||||||| |||||||||
Sbjct 455 AAAACCGGTTTAAC-CAGAATCAATCCCGGTTTAGCTTTCACAATG 499
Score = 145 bits (78), Expect = 1e-33
Identities = 96/105 (91%), Gaps = 0/105 (0%)
Strand=Plus/Plus
Query 228 CAGAAACTCAAAATCAAAACCGGTACAATGGTACATCGGAGACGATACTAAACCGGAGAA 287
|||| |||| |||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 691 CAGAGACTCGAAATCAAAACCGGTACAATGGTACATCGGAGACGATTCAAAACCGGAGAA 750
Query 288 GAAGATCATAAAGCGGTTCGTTAAAGAAGGAGTTCAATTCTACAG 332
|||| | || ||| | |||||||||||||||||||||||||||||
Sbjct 751 GAAGGTAATCAAGAGATTCGTTAAAGAAGGAGTTCAATTCTACAG 795
> AT1G77660.1 | Symbols: | Histone H3 K4-specific methyltransferase
SET7/9 family protein | chr1:29185899-29187825 REVERSE
LENGTH=1765
Length=1765
Score = 603 bits (326), Expect = 1e-171
Identities = 584/705 (83%), Gaps = 32/705 (5%)
Strand=Plus/Plus
Query 332 GGAAGTGTAATGGAAGTGGTGTGTATTACTATTTCGTGAGA-GGAAGATATGAAGGAGAT 390
|||||||||| |||||||| || ||||| |||| ||| | | ||||||||||||||||||
Sbjct 894 GGAAGTGTAACGGAAGTGGAGTTTATTATTATTACGTTA-ATGGAAGATATGAAGGAGAT 952
Query 391 TGGAT-AGATGGGAGATATGATGGTCATGGGATTGAGAGTTGGGCTAGAGGAAGTAGATA 449
||||| | |||| || || |||||| |||| || ||| ||||| ||| |||||||| |||
Sbjct 953 TGGATCA-ATGGAAGGTACGATGGTTATGGAATCGAGTGTTGGTCTAAAGGAAGTAAATA 1011
Query 450 TAAAGGTCAATAT-AGACAAGGTCTTAGACATGGTAATGGAGTTTA-TAGATTCTACACT 507
|||||| || ||| || ||||| |||||||||||| ||||||||| | | || |||||
Sbjct 1012 TAAAGGACAGTATAAG-CAAGGACTTAGACATGGTTTTGGAGTTTACT-GGTTTTACACC 1069
Query 508 GGTGATTGTTA-TGCTGGTGAATGGTTTAATGGTCAAAGCCATGGTTTTGGTGGTCAATC 566
|| |||| ||| | |||||||||||||||| |||||||||||||| ||||| | |||| |
Sbjct 1070 GGAGATTCTTACT-CTGGTGAATGGTTTAACGGTCAAAGCCATGGCTTTGGAGTTCAAAC 1128
Query 567 TTGTGCTGATGGTAGCTCTTATGTTGGTG-AGTCTAGATTTGGTGTTAAACATGGTCTTG 625
|||||||||||| ||||||| ||| || | | || | ||||||||| |||||||| ||||
Sbjct 1129 TTGTGCTGATGGAAGCTCTTTTGTCGGAGAATTC-AAATTTGGTGTCAAACATGGACTTG 1187
Query 626 GTTCTTACCATTTCAGAAATGGAGATAAGTATGCAGGAGAGTATTTTGGAGACAAGATTC 685
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1188 GTTCTTACCATTTCAGGAATGGAGATAAGTATGCAGGAGAGTATTTTGGAGACAAGATTC 1247
Query 686 ATGGGTTTGGTGTGTATCGATTT-GCTAATGGTCATTGTTATGAAGGAGCATGGCATGAA 744
|||| |||||||| || | |||| ||||||||||| | ||| |||||||| |||||||||
Sbjct 1248 ATGGATTTGGTGTTTACC-ATTTCGCTAATGGTCACTATTACGAAGGAGCTTGGCATGAA 1306
Query 745 GGTCGTAAGCAAGGGTTTGGTGCTTACTCG-TTTAGAACTGGTGATG-CTAAATCTGGTG 802
|||||||| ||||| | ||| | || | | |||||||| |||||| | ||||| ||||
Sbjct 1307 GGTCGTAAACAAGGCTATGGCACGTA-TAGATTTAGAACCGGTGATATC-AAATCCGGTG 1364
Query 803 AATGGGATTCTGGGAAGCTTGT-AACTTCTCTTCCTCTTGCGAGT--GAGCCAGTTTCA- 858
|||||||| ||| || || || ||| ||||||| || || | || || ||| |
Sbjct 1365 AATGGGATGATGGTAATCTCGTTAACCA-TCTTCCT-TTA-GACTCTGACCCGGTT-CGT 1420
Query 859 AGAGCGGTTCAG-GCGGCTCGAGAAACAGCGAATAA-GGCAGTGAATCGGAGACG-AGTA 915
|| ||||||||| | | | ||||||| ||| || || || |||||||| |||||| | |
Sbjct 1421 AGGGCGGTTCAGAGTG-CACGAGAAAGAGCAAAGAATGG-AGTGAATCAGAGACGGA-TC 1477
Query 916 GATGAGCAGGTGAGCCGAGCCGTGGCTGCAGCTAATAAGGCTGCTACGGCTGCAAGAGTG 975
||||||||||||| ||||| ||||||||||||||||| ||||| |||||||| |||||
Sbjct 1478 GATGAGCAGGTGATACGAGCTGTGGCTGCAGCTAATAAAGCTGCGACGGCTGCTAGAGTT 1537
Query 976 GCTGCTGTGAGAGCCGTTCAGAATCAAATGGATGGTAAATTTTGT 1020
|| ||||||| ||| ||||| |||||||||||||||||| |||||
Sbjct 1538 GCAGCTGTGAAAGCAGTTCAAAATCAAATGGATGGTAAAATTTGT 1582
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50435083588
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5