BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg335467
Length=1578
Score E
Sequences producing significant alignments: (Bits) Value
AT1G22240.1 | Symbols: APUM8, PUM8 | pumilio 8 | chr1:7853084-7... 2217 0.0
AT1G78160.1 | Symbols: APUM7, PUM7 | pumilio 7 | chr1:29407900-... 870 0.0
> AT1G22240.1 | Symbols: APUM8, PUM8 | pumilio 8 | chr1:7853084-7854963
FORWARD LENGTH=1548
Length=1548
Score = 2217 bits (1200), Expect = 0.0
Identities = 1462/1583 (92%), Gaps = 40/1583 (3%)
Strand=Plus/Plus
Query 1 ATGATGAGAGGTGAATTTGGAGAAGCTTCGTCTCCTTCGTCTCTTTCACGTTCTCCTTCT 60
|||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 1 ATGATGAGAGGTGAATTTGGAGAA-----G----CTTCGTCTCTTTCACGTTCTCCTTCT 51
Query 61 TCTCCTCTTCAAACACAATCACATCATCACTCTCCTAAGTTCTATCGTAATCATTATGTC 120
||||||||||||||| || |||||| || ||||| ||||| ||||||||||||||||||
Sbjct 52 TCTCCTCTTCAAACAGAACCACATCCCCAATCTCCCAAGTTTTATCGTAATCATTATGTC 111
Query 121 --TTCC-CTGGTGACTCATCTTACAACAGTTCGACTAGGTTCTGTCTCCGATCTCCGTCT 177
|||| || | ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 112 TTTTCCGGTGATCACTCATCTTACAACAGTTCGAGTAGGTTCTGTCTCCGATCTCCGTCT 171
Query 178 GATTACTCACTTTCGAGTTACTTCTCAAATGGGTTGTGTTCTTCTGAGGATGGTTCGTCT 237
|||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 172 GATTACTCGCTTTCGAGTTATTTCTCAAACGGGTTGTGTTCTTCTGAGGATGGTTCGTCT 231
Query 238 CAGTTCGCTTCTCCTCCACTCGATGGCTTGATGACCAAGTATAATCTTGGTGGTGATGAT 297
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 232 CAGTTCGCTTCTCCTCCACTCGATGGCTTGATGACCAAGTATAATTTTGGTGGTGATGAT 291
Query 298 TTAGGTCTTTGCGAAAGTTTCCATCTTTTGAATGTTGCAGAAGAAGAATACAAGACTCAT 357
|||||||| |||||||||||| ||||| ||||||||| | ||||||| |||||||||||
Sbjct 292 TTAGGTCTATGCGAAAGTTTCGATCTTCTGAATGTTG--G-AGAAGAAGACAAGACTCAT 348
Query 358 CACCAAACTCAAAGGAGCAACTTTGGTAACTATGACGCTAATGGTGATGGTGGATTGCGA 417
||||||||||| ||||||| |||||||||||||| |||||||| ||||||||||| |||
Sbjct 349 CACCAAACTCAGAGGAGCAGTTTTGGTAACTATGAAGCTAATGGAGATGGTGGATTCCGA 408
Query 418 TTTTACTCTGGTTTTGGTGTTGATCAAAAGGATCAAACTTTACTCTTCCCAAATCAAAGG 477
| ||||||||||||||| |||||||||||||||| | | | | || | | |
Sbjct 409 TATTACTCTGGTTTTGGAGTTGATCAAAAGGATC--A-TCAAAT-TT--C---T---A-- 454
Query 478 GATCATCAGATTCCTAATCTGGGATTGCAGAGTTGTTACATGAACAATTACTCTGTTCCG 537
|| || || ||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 455 -AT--TC---TT-GGAATCTGGGAATGCAGAGTTGTAACATGAACAATTACTCTGTTCCG 507
Query 538 GTTTATCGAAAAAGCGGTGTTGGGA-CATTGTTTGATGATCAAGGAAGTAGCAGTAACAC 596
|| || |||||||||||||| ||| ||||||||||| ||||||||| |||||||||| |
Sbjct 508 GTACATGGAAAAAGCGGTGTT-GGAGCATTGTTTGATCATCAAGGAATTAGCAGTAACCC 566
Query 597 GAATCAGAGTCTGCCTAAAGTATCTGAATTCCAGGGATATGTTTACTTAATGGCTAAAGA 656
||| |||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 567 TAATGAGAGTCTGCCTAAAGTATCTGAATTCCAGGGATATGTTTATTTTATGGCTAAAGA 626
Query 657 TCAACATGGTTGCAGATTTTTACAGAGGATCTTCGAAGATGGAAGTGCTTTAGATGCTAT 716
|||||||||||||||||| |||||| ||||||| |||||||||||||||||||||||| |
Sbjct 627 TCAACATGGTTGCAGATTCTTACAGTGGATCTTTGAAGATGGAAGTGCTTTAGATGCTCT 686
Query 717 GGTTATTTTCAATGAAGTGATTCCTCATGTTGTTGAGCTTATGATGGATCCTTTTGGGAA 776
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 687 GGTTATTTTCAGTGAAGTGATTCCTCATGTTGTTGAGCTTATGATGGATCCTTTTGGTAA 746
Query 777 TTACTTGATGCAGAAACTATTAGATGTTTGTAATGAAGAACAACGAACACAGATCATACT 836
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 747 TTACTTGATGCAGAAACTATTAGATGTTTGTAATGAAGAACAAAGGACACAGATCATACT 806
Query 837 TATGGTCACTTCAGAACCTGGACAGCTTATTCGGATTTCGCTCAACGCTTACGGTACTCG 896
|||||||||||||||||||| ||||||||||| || || ||||||||||| ||||||||
Sbjct 807 CATGGTCACTTCAGAACCTGGTCAGCTTATTCGAATATCTCTCAACGCTTATGGTACTCG 866
Query 897 AGTTGTTCAGAGATTAGTGGAATCAATCAAGACAAGGAAGCAGATTTCTTTGGTGAAATT 956
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 867 AGTTGTTCAGAGATTAGTGGAATCAATCAAGACAAGGAAGCAGATTTCTCTGGTGAAATC 926
Query 957 AGCTCTT-AGACCTGGATTTCTCAATCTCATTAGGGATCTAAATGGGAATCATGTGATTC 1015
|||| || || ||||||||||| ||||||||||||||| | |||||||||||||||||||
Sbjct 927 AGCT-TTGAGGCCTGGATTTCTTAATCTCATTAGGGATTTGAATGGGAATCATGTGATTC 985
Query 1016 AACGTTGCTTGAAGTGCCTTAGCACAAAAGATAACGAGTTCATCTTTGAAGATGCTACAA 1075
||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 986 AACGTTGCTTGCAGTGCCTTAGTACAGAAGATAACGAGTTCATCTTTGAAGATGCTACAA 1045
Query 1076 AGTTCTGTATCGATATTGCGACACATCGACATGGATGTTGTGTGTTACAAAAATGCATTG 1135
|||||||||||||||| || |||||| ||||||||||||||||||||||||| |||||||
Sbjct 1046 AGTTCTGTATCGATATCGCTACACATAGACATGGATGTTGTGTGTTACAAAAGTGCATTG 1105
Query 1136 CTTATTCCAGTGGACTACAAAGAGAGAAGCTTGTAACTGAAATCTCAAGAAACAGTCTCT 1195
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1106 CTTATTCCAGTGGACTACAAAGAGAGAAGCTTGTAACCGAAATCTCAAGAAACAGTCTCT 1165
Query 1196 TCCTTGCTCAAGATCCTTATGGGAACTATGCGGTCCAATTCGTTCTAGAACTGAGGGATT 1255
|||| |||||||||||||||||||||||||| |||||||| ||||| |||||||||||||
Sbjct 1166 TCCTAGCTCAAGATCCTTATGGGAACTATGCTGTCCAATTTGTTCTTGAACTGAGGGATT 1225
Query 1256 TTTCTGCGATAGCCGCGATGCTTGCGCAGTTAAAAGGTCATTATGTAGAGCTTTCAATGC 1315
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1226 TTTCTGCGATAGCCGCGATGCTTGCGCAGTTGAAAGGTCATTATGTAGAGCTTTCAATGC 1285
Query 1316 AGAAATTCAGTAGTCATATGGTGGAAAGATGCTTAACACATTGTCCAGAGAGCCGTCCTC 1375
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1286 AGAAATTTAGTAGTCATATGGTGGAAAGATGCTTAACACATTGTCCAGAGAGCCGTCCTC 1345
Query 1376 AGATCGTGCGTGAACTCATCTCTGTTCCTCATTTTGATATTCTAATTCAAGACCCTTATG 1435
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1346 AGATCGTGCGCGAACTCATCTCTGTTCCTCATTTTGATATTCTAATTCAAGACCCTTATG 1405
Query 1436 CTAACTTTGTCATCCAAGCTGCTCTTGCTGTCACCAAGGGTTCACTTCATGCCACACTCG 1495
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1406 CTAACTTTGTCATCCAAGCTGCTCTTGCTGTTACCAAGGGTTCACTTCATGCCACACTCG 1465
Query 1496 TTGAAGTCATAAGGCCTCACTCGATTCTACGTAACAATCCTTATTGCAAAAGGATTTTCT 1555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1466 TTGAAGTCATAAGGCCTCACTCGATTCTACGTAACAATCCTTATTGCAAAAGGATTTTCT 1525
Query 1556 CAAGAAATCTCTTGAAGAATTGA 1578
|| ||||||||||||||||||||
Sbjct 1526 CACGAAATCTCTTGAAGAATTGA 1548
> AT1G78160.1 | Symbols: APUM7, PUM7 | pumilio 7 | chr1:29407900-29410184
FORWARD LENGTH=1953
Length=1953
Score = 870 bits (471), Expect = 0.0
Identities = 828/996 (83%), Gaps = 42/996 (4%)
Strand=Plus/Plus
Query 604 AGTCTGCCTAA-AGTATCTGA-ATTCCAGGGATATGTTTACTTAATGGCTAAAGATCAAC 661
||||||||||| | | | ||| ||| || |||||||||||||||||||||||||||||||
Sbjct 979 AGTCTGCCTAACA-TGTGTGACATT-CAAGGATATGTTTACTTAATGGCTAAAGATCAAC 1036
Query 662 ATGGTTG-CAGATTTTTACAGAGGATCTTCGAAGATGGAAGTGCT-TTAGATGCTATGGT 719
| || || | |||| || |||||||| ||||| || |||| | || || || || ||| |
Sbjct 1037 ACGGATGTC-GATTCTTGCAGAGGATTTTCGATGAAGGAACTTCTGTT-GACGCGATGAT 1094
Query 720 TATTTTCAATGAAGTGATTCCTCATGTTGTTGAGCTTATGATGGATCCTTTTGGGAATTA 779
||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1095 TATATTCAATGAAGTTATTGCTCATGTTGTTGAGCTTATGATGGATCCTTTTGGGAATTA 1154
Query 780 CTTGATGCAGAAACTATTAGATGTTTGTAATGAAGAACA-ACGAACACAGATCATACTTA 838
| ||||||||||||| ||||||||||||| ||||||||| | || |||||||| | ||
Sbjct 1155 CCTGATGCAGAAACTCTTAGATGTTTGTACTGAAGAACAGAGGA-CACAGATCGTGCTCG 1213
Query 839 TGGTCA-CTTCAGAA-CCTGGACAGCTTATTCGGATTTCGCTCAACGCTTACGGTACTCG 896
||| || || || | ||||| || ||||| ||||| || ||||| || |||||||||||
Sbjct 1214 TGG-CAACTG-AGGAGCCTGGTCAACTTATCCGGATATCTCTCAATGCATACGGTACTCG 1271
Query 897 AGTTGTTCAGAGATTAGTGGAATCAATCAAGACAA-GGAAG-CAGATTTCTTTGGTGAAA 954
|||||| || |||||||||||| |||||| || | |||| ||||||||| ||||||||
Sbjct 1272 AGTTGTCCAAAGATTAGTGGAAACAATCA-GA-AGCGGAAAACAGATTTCTCTGGTGAAA 1329
Query 955 TTAGCTCTT-AGACCTGGATTTCTCAATCTCATTAGGGATCTAAATGGGAATCATGTGAT 1013
|| ||| || ||||| || ||||| || | || | ||| ||||||| || ||||||||
Sbjct 1330 TTGGCT-TTGAGACCCGGTTTTCTTGATTTGATCAAAGATTTAAATGGAAACCATGTGAT 1388
Query 1014 TCAACGTTGCTTG-AAGTGCCTTAGCACAAAAGATAACGAGTTCATCTTTGAAGATGCTA 1072
||||||||||||| || ||||||||||| |||||||| |||| |||||||| | || |
Sbjct 1389 TCAACGTTGCTTGCAA-TGCCTTAGCACTGAAGATAACAAGTTTATCTTTGACGCGGCGA 1447
Query 1073 CAAAGTTCTGTA-TCGATATTGCGACACATCGACATGGATGTTGTGTGTTACAAAAATGC 1131
|||||||||| | | || || || |||||||||||||||||||||||| |||||||||||
Sbjct 1448 CAAAGTTCTGCACT-GAAATCGCAACACATCGACATGGATGTTGTGTGCTACAAAAATGC 1506
Query 1132 ATTGCTTATTCCAGTG-GACTACAAAGAGAGAAGCTTG-TAACTGAAATCTCAAGAAACA 1189
||||||||||| | || ||| |||| ||||||| || | | |||| ||||| |||||||
Sbjct 1507 ATTGCTTATTCAA-TGAGACAACAACGAGAGAAACT-GATCGCTGAGATCTCTAGAAACA 1564
Query 1190 GTCTC-TTCCTTGCTCAAGATCC-TTATGGGAACTATGCGGTCCAATTCGTTCTAGAACT 1247
||||| ||| |||||||||| || || ||||||||| || |||||||| ||| |||||||
Sbjct 1565 GTCTCCTTC-TTGCTCAAGACCCCTT-TGGGAACTACGCAGTCCAATTTGTTATAGAACT 1622
Query 1248 GAGGGATTT-TTCTGCGATAGCCGC-GATGCTTGCGCAGTTAAAAGGTCATTATGTAGAG 1305
||| ||| ||||||| | || | |||||| || || |||||||| ||||| || ||
Sbjct 1623 AAGG-ATTCCTTCTGCGGTGGC-GATGATGCTGGCTCAATTAAAAGGGCATTACGTTCAG 1680
Query 1306 CTTTCAATGCAGAAATTCAGTAGTCATATGGTGGAAAGATG-CTTAACACATTGTCCAGA 1364
||||| ||||||||||||||||| || ||||||||| |||| || | |||||||||||
Sbjct 1681 CTTTCGATGCAGAAATTCAGTAGCCACATGGTGGAACGATGTCTCATG-CATTGTCCAGA 1739
Query 1365 GAGCCGTCCTCAGATCGTGCGTGAACTCATCTCTGTTCCTCATTTTGAT-ATTCTAATTC 1423
||| ||||| || ||||||||||| ||| ||||||||||||| |||||| | || |||
Sbjct 1740 GAGTCGTCCACAAATCGTGCGTGAGCTCGTCTCTGTTCCTCACTTTGATCAG-CTTCTTC 1798
Query 1424 AAGACCCTTATGCTAACTTT-GTCATCCAAGCTGCTCTTGCTGTCACCAAGGGTTCACTT 1482
|||||||||| || || ||| ||||||||||| |||||||||| ||| |||||| |||||
Sbjct 1799 AAGACCCTTACGCAAA-TTTCGTCATCCAAGCCGCTCTTGCTGCCACAAAGGGTCCACTT 1857
Query 1483 CATGCCACACTCGTTGAAGTCATAAGGCCTCACTCGATTCTACGTAACAATCCTTATTGC 1542
||||| |||| || |||||||||||||| || |||||||||||||| ||||||||||||
Sbjct 1858 CATGCTTCACTAGTGGAAGTCATAAGGCCACATTCGATTCTACGTAATAATCCTTATTGC 1917
Query 1543 AAAAGGATTTTCTCAAGAAATCTCTTGAAGAATTGA 1578
|| ||||||||||| || ||||| |||||||| |||
Sbjct 1918 AAGAGGATTTTCTCGAGGAATCTATTGAAGAAGTGA 1953
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77911245840
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5