BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg335467 Length=1578 Score E Sequences producing significant alignments: (Bits) Value AT1G22240.1 | Symbols: APUM8, PUM8 | pumilio 8 | chr1:7853084-7... 2217 0.0 AT1G78160.1 | Symbols: APUM7, PUM7 | pumilio 7 | chr1:29407900-... 870 0.0 > AT1G22240.1 | Symbols: APUM8, PUM8 | pumilio 8 | chr1:7853084-7854963 FORWARD LENGTH=1548 Length=1548 Score = 2217 bits (1200), Expect = 0.0 Identities = 1462/1583 (92%), Gaps = 40/1583 (3%) Strand=Plus/Plus Query 1 ATGATGAGAGGTGAATTTGGAGAAGCTTCGTCTCCTTCGTCTCTTTCACGTTCTCCTTCT 60 |||||||||||||||||||||||| | |||||||||||||||||||||||||| Sbjct 1 ATGATGAGAGGTGAATTTGGAGAA-----G----CTTCGTCTCTTTCACGTTCTCCTTCT 51 Query 61 TCTCCTCTTCAAACACAATCACATCATCACTCTCCTAAGTTCTATCGTAATCATTATGTC 120 ||||||||||||||| || |||||| || ||||| ||||| |||||||||||||||||| Sbjct 52 TCTCCTCTTCAAACAGAACCACATCCCCAATCTCCCAAGTTTTATCGTAATCATTATGTC 111 Query 121 --TTCC-CTGGTGACTCATCTTACAACAGTTCGACTAGGTTCTGTCTCCGATCTCCGTCT 177 |||| || | ||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 112 TTTTCCGGTGATCACTCATCTTACAACAGTTCGAGTAGGTTCTGTCTCCGATCTCCGTCT 171 Query 178 GATTACTCACTTTCGAGTTACTTCTCAAATGGGTTGTGTTCTTCTGAGGATGGTTCGTCT 237 |||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||| Sbjct 172 GATTACTCGCTTTCGAGTTATTTCTCAAACGGGTTGTGTTCTTCTGAGGATGGTTCGTCT 231 Query 238 CAGTTCGCTTCTCCTCCACTCGATGGCTTGATGACCAAGTATAATCTTGGTGGTGATGAT 297 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 232 CAGTTCGCTTCTCCTCCACTCGATGGCTTGATGACCAAGTATAATTTTGGTGGTGATGAT 291 Query 298 TTAGGTCTTTGCGAAAGTTTCCATCTTTTGAATGTTGCAGAAGAAGAATACAAGACTCAT 357 |||||||| |||||||||||| ||||| ||||||||| | ||||||| ||||||||||| Sbjct 292 TTAGGTCTATGCGAAAGTTTCGATCTTCTGAATGTTG--G-AGAAGAAGACAAGACTCAT 348 Query 358 CACCAAACTCAAAGGAGCAACTTTGGTAACTATGACGCTAATGGTGATGGTGGATTGCGA 417 ||||||||||| ||||||| |||||||||||||| |||||||| ||||||||||| ||| Sbjct 349 CACCAAACTCAGAGGAGCAGTTTTGGTAACTATGAAGCTAATGGAGATGGTGGATTCCGA 408 Query 418 TTTTACTCTGGTTTTGGTGTTGATCAAAAGGATCAAACTTTACTCTTCCCAAATCAAAGG 477 | ||||||||||||||| |||||||||||||||| | | | | || | | | Sbjct 409 TATTACTCTGGTTTTGGAGTTGATCAAAAGGATC--A-TCAAAT-TT--C---T---A-- 454 Query 478 GATCATCAGATTCCTAATCTGGGATTGCAGAGTTGTTACATGAACAATTACTCTGTTCCG 537 || || || ||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 455 -AT--TC---TT-GGAATCTGGGAATGCAGAGTTGTAACATGAACAATTACTCTGTTCCG 507 Query 538 GTTTATCGAAAAAGCGGTGTTGGGA-CATTGTTTGATGATCAAGGAAGTAGCAGTAACAC 596 || || |||||||||||||| ||| ||||||||||| ||||||||| |||||||||| | Sbjct 508 GTACATGGAAAAAGCGGTGTT-GGAGCATTGTTTGATCATCAAGGAATTAGCAGTAACCC 566 Query 597 GAATCAGAGTCTGCCTAAAGTATCTGAATTCCAGGGATATGTTTACTTAATGGCTAAAGA 656 ||| |||||||||||||||||||||||||||||||||||||||| || ||||||||||| Sbjct 567 TAATGAGAGTCTGCCTAAAGTATCTGAATTCCAGGGATATGTTTATTTTATGGCTAAAGA 626 Query 657 TCAACATGGTTGCAGATTTTTACAGAGGATCTTCGAAGATGGAAGTGCTTTAGATGCTAT 716 |||||||||||||||||| |||||| ||||||| |||||||||||||||||||||||| | Sbjct 627 TCAACATGGTTGCAGATTCTTACAGTGGATCTTTGAAGATGGAAGTGCTTTAGATGCTCT 686 Query 717 GGTTATTTTCAATGAAGTGATTCCTCATGTTGTTGAGCTTATGATGGATCCTTTTGGGAA 776 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 687 GGTTATTTTCAGTGAAGTGATTCCTCATGTTGTTGAGCTTATGATGGATCCTTTTGGTAA 746 Query 777 TTACTTGATGCAGAAACTATTAGATGTTTGTAATGAAGAACAACGAACACAGATCATACT 836 ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| Sbjct 747 TTACTTGATGCAGAAACTATTAGATGTTTGTAATGAAGAACAAAGGACACAGATCATACT 806 Query 837 TATGGTCACTTCAGAACCTGGACAGCTTATTCGGATTTCGCTCAACGCTTACGGTACTCG 896 |||||||||||||||||||| ||||||||||| || || ||||||||||| |||||||| Sbjct 807 CATGGTCACTTCAGAACCTGGTCAGCTTATTCGAATATCTCTCAACGCTTATGGTACTCG 866 Query 897 AGTTGTTCAGAGATTAGTGGAATCAATCAAGACAAGGAAGCAGATTTCTTTGGTGAAATT 956 ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 867 AGTTGTTCAGAGATTAGTGGAATCAATCAAGACAAGGAAGCAGATTTCTCTGGTGAAATC 926 Query 957 AGCTCTT-AGACCTGGATTTCTCAATCTCATTAGGGATCTAAATGGGAATCATGTGATTC 1015 |||| || || ||||||||||| ||||||||||||||| | ||||||||||||||||||| Sbjct 927 AGCT-TTGAGGCCTGGATTTCTTAATCTCATTAGGGATTTGAATGGGAATCATGTGATTC 985 Query 1016 AACGTTGCTTGAAGTGCCTTAGCACAAAAGATAACGAGTTCATCTTTGAAGATGCTACAA 1075 ||||||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||| Sbjct 986 AACGTTGCTTGCAGTGCCTTAGTACAGAAGATAACGAGTTCATCTTTGAAGATGCTACAA 1045 Query 1076 AGTTCTGTATCGATATTGCGACACATCGACATGGATGTTGTGTGTTACAAAAATGCATTG 1135 |||||||||||||||| || |||||| ||||||||||||||||||||||||| ||||||| Sbjct 1046 AGTTCTGTATCGATATCGCTACACATAGACATGGATGTTGTGTGTTACAAAAGTGCATTG 1105 Query 1136 CTTATTCCAGTGGACTACAAAGAGAGAAGCTTGTAACTGAAATCTCAAGAAACAGTCTCT 1195 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1106 CTTATTCCAGTGGACTACAAAGAGAGAAGCTTGTAACCGAAATCTCAAGAAACAGTCTCT 1165 Query 1196 TCCTTGCTCAAGATCCTTATGGGAACTATGCGGTCCAATTCGTTCTAGAACTGAGGGATT 1255 |||| |||||||||||||||||||||||||| |||||||| ||||| ||||||||||||| Sbjct 1166 TCCTAGCTCAAGATCCTTATGGGAACTATGCTGTCCAATTTGTTCTTGAACTGAGGGATT 1225 Query 1256 TTTCTGCGATAGCCGCGATGCTTGCGCAGTTAAAAGGTCATTATGTAGAGCTTTCAATGC 1315 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1226 TTTCTGCGATAGCCGCGATGCTTGCGCAGTTGAAAGGTCATTATGTAGAGCTTTCAATGC 1285 Query 1316 AGAAATTCAGTAGTCATATGGTGGAAAGATGCTTAACACATTGTCCAGAGAGCCGTCCTC 1375 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1286 AGAAATTTAGTAGTCATATGGTGGAAAGATGCTTAACACATTGTCCAGAGAGCCGTCCTC 1345 Query 1376 AGATCGTGCGTGAACTCATCTCTGTTCCTCATTTTGATATTCTAATTCAAGACCCTTATG 1435 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1346 AGATCGTGCGCGAACTCATCTCTGTTCCTCATTTTGATATTCTAATTCAAGACCCTTATG 1405 Query 1436 CTAACTTTGTCATCCAAGCTGCTCTTGCTGTCACCAAGGGTTCACTTCATGCCACACTCG 1495 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1406 CTAACTTTGTCATCCAAGCTGCTCTTGCTGTTACCAAGGGTTCACTTCATGCCACACTCG 1465 Query 1496 TTGAAGTCATAAGGCCTCACTCGATTCTACGTAACAATCCTTATTGCAAAAGGATTTTCT 1555 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1466 TTGAAGTCATAAGGCCTCACTCGATTCTACGTAACAATCCTTATTGCAAAAGGATTTTCT 1525 Query 1556 CAAGAAATCTCTTGAAGAATTGA 1578 || |||||||||||||||||||| Sbjct 1526 CACGAAATCTCTTGAAGAATTGA 1548 > AT1G78160.1 | Symbols: APUM7, PUM7 | pumilio 7 | chr1:29407900-29410184 FORWARD LENGTH=1953 Length=1953 Score = 870 bits (471), Expect = 0.0 Identities = 828/996 (83%), Gaps = 42/996 (4%) Strand=Plus/Plus Query 604 AGTCTGCCTAA-AGTATCTGA-ATTCCAGGGATATGTTTACTTAATGGCTAAAGATCAAC 661 ||||||||||| | | | ||| ||| || ||||||||||||||||||||||||||||||| Sbjct 979 AGTCTGCCTAACA-TGTGTGACATT-CAAGGATATGTTTACTTAATGGCTAAAGATCAAC 1036 Query 662 ATGGTTG-CAGATTTTTACAGAGGATCTTCGAAGATGGAAGTGCT-TTAGATGCTATGGT 719 | || || | |||| || |||||||| ||||| || |||| | || || || || ||| | Sbjct 1037 ACGGATGTC-GATTCTTGCAGAGGATTTTCGATGAAGGAACTTCTGTT-GACGCGATGAT 1094 Query 720 TATTTTCAATGAAGTGATTCCTCATGTTGTTGAGCTTATGATGGATCCTTTTGGGAATTA 779 ||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1095 TATATTCAATGAAGTTATTGCTCATGTTGTTGAGCTTATGATGGATCCTTTTGGGAATTA 1154 Query 780 CTTGATGCAGAAACTATTAGATGTTTGTAATGAAGAACA-ACGAACACAGATCATACTTA 838 | ||||||||||||| ||||||||||||| ||||||||| | || |||||||| | || Sbjct 1155 CCTGATGCAGAAACTCTTAGATGTTTGTACTGAAGAACAGAGGA-CACAGATCGTGCTCG 1213 Query 839 TGGTCA-CTTCAGAA-CCTGGACAGCTTATTCGGATTTCGCTCAACGCTTACGGTACTCG 896 ||| || || || | ||||| || ||||| ||||| || ||||| || ||||||||||| Sbjct 1214 TGG-CAACTG-AGGAGCCTGGTCAACTTATCCGGATATCTCTCAATGCATACGGTACTCG 1271 Query 897 AGTTGTTCAGAGATTAGTGGAATCAATCAAGACAA-GGAAG-CAGATTTCTTTGGTGAAA 954 |||||| || |||||||||||| |||||| || | |||| ||||||||| |||||||| Sbjct 1272 AGTTGTCCAAAGATTAGTGGAAACAATCA-GA-AGCGGAAAACAGATTTCTCTGGTGAAA 1329 Query 955 TTAGCTCTT-AGACCTGGATTTCTCAATCTCATTAGGGATCTAAATGGGAATCATGTGAT 1013 || ||| || ||||| || ||||| || | || | ||| ||||||| || |||||||| Sbjct 1330 TTGGCT-TTGAGACCCGGTTTTCTTGATTTGATCAAAGATTTAAATGGAAACCATGTGAT 1388 Query 1014 TCAACGTTGCTTG-AAGTGCCTTAGCACAAAAGATAACGAGTTCATCTTTGAAGATGCTA 1072 ||||||||||||| || ||||||||||| |||||||| |||| |||||||| | || | Sbjct 1389 TCAACGTTGCTTGCAA-TGCCTTAGCACTGAAGATAACAAGTTTATCTTTGACGCGGCGA 1447 Query 1073 CAAAGTTCTGTA-TCGATATTGCGACACATCGACATGGATGTTGTGTGTTACAAAAATGC 1131 |||||||||| | | || || || |||||||||||||||||||||||| ||||||||||| Sbjct 1448 CAAAGTTCTGCACT-GAAATCGCAACACATCGACATGGATGTTGTGTGCTACAAAAATGC 1506 Query 1132 ATTGCTTATTCCAGTG-GACTACAAAGAGAGAAGCTTG-TAACTGAAATCTCAAGAAACA 1189 ||||||||||| | || ||| |||| ||||||| || | | |||| ||||| ||||||| Sbjct 1507 ATTGCTTATTCAA-TGAGACAACAACGAGAGAAACT-GATCGCTGAGATCTCTAGAAACA 1564 Query 1190 GTCTC-TTCCTTGCTCAAGATCC-TTATGGGAACTATGCGGTCCAATTCGTTCTAGAACT 1247 ||||| ||| |||||||||| || || ||||||||| || |||||||| ||| ||||||| Sbjct 1565 GTCTCCTTC-TTGCTCAAGACCCCTT-TGGGAACTACGCAGTCCAATTTGTTATAGAACT 1622 Query 1248 GAGGGATTT-TTCTGCGATAGCCGC-GATGCTTGCGCAGTTAAAAGGTCATTATGTAGAG 1305 ||| ||| ||||||| | || | |||||| || || |||||||| ||||| || || Sbjct 1623 AAGG-ATTCCTTCTGCGGTGGC-GATGATGCTGGCTCAATTAAAAGGGCATTACGTTCAG 1680 Query 1306 CTTTCAATGCAGAAATTCAGTAGTCATATGGTGGAAAGATG-CTTAACACATTGTCCAGA 1364 ||||| ||||||||||||||||| || ||||||||| |||| || | ||||||||||| Sbjct 1681 CTTTCGATGCAGAAATTCAGTAGCCACATGGTGGAACGATGTCTCATG-CATTGTCCAGA 1739 Query 1365 GAGCCGTCCTCAGATCGTGCGTGAACTCATCTCTGTTCCTCATTTTGAT-ATTCTAATTC 1423 ||| ||||| || ||||||||||| ||| ||||||||||||| |||||| | || ||| Sbjct 1740 GAGTCGTCCACAAATCGTGCGTGAGCTCGTCTCTGTTCCTCACTTTGATCAG-CTTCTTC 1798 Query 1424 AAGACCCTTATGCTAACTTT-GTCATCCAAGCTGCTCTTGCTGTCACCAAGGGTTCACTT 1482 |||||||||| || || ||| ||||||||||| |||||||||| ||| |||||| ||||| Sbjct 1799 AAGACCCTTACGCAAA-TTTCGTCATCCAAGCCGCTCTTGCTGCCACAAAGGGTCCACTT 1857 Query 1483 CATGCCACACTCGTTGAAGTCATAAGGCCTCACTCGATTCTACGTAACAATCCTTATTGC 1542 ||||| |||| || |||||||||||||| || |||||||||||||| |||||||||||| Sbjct 1858 CATGCTTCACTAGTGGAAGTCATAAGGCCACATTCGATTCTACGTAATAATCCTTATTGC 1917 Query 1543 AAAAGGATTTTCTCAAGAAATCTCTTGAAGAATTGA 1578 || ||||||||||| || ||||| |||||||| ||| Sbjct 1918 AAGAGGATTTTCTCGAGGAATCTATTGAAGAAGTGA 1953 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 77911245840 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5