BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg335492
Length=939
Score E
Sequences producing significant alignments: (Bits) Value
AT1G22490.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bin... 1341 0.0
AT1G72210.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bin... 244 9e-64
> AT1G22490.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr1:7938251-7940592 REVERSE LENGTH=1215
Length=1215
Score = 1341 bits (726), Expect = 0.0
Identities = 870/939 (93%), Gaps = 12/939 (1%)
Strand=Plus/Plus
Query 1 ATGCCCTTAGAGGCTGTCGTATACCCGCAAGATCCATTCGGATATCTTTCTAATTGCAAA 60
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 104 ATGCCCTTAGAGGCTGTCGTATACCCGCAAGATCCATTCGGATATCTCTCCAATTGCAAA 163
Query 61 GATTTCATGTTCCACGACTTGTGCTCTCAAGAAGAGGTCTTAGCTCAAGATACGAAGAAC 120
||||| |||||||||||||| | ||||||||||||| || ||||||||||||||||||||
Sbjct 164 GATTTTATGTTCCACGACTTATACTCTCAAGAAGAGTTCGTAGCTCAAGATACGAAGAAC 223
Query 121 AACATTGATAAGTTAGGGCAAGAACAGAGATTTGTGGAACAAGGTAAGGAGGAGGATCGT 180
|||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||| |
Sbjct 224 AACATTGATAAGTTAGGGCATGAACAGAGCTTTGTGGAACAAGGTAAGGAGGACGATCAT 283
Query 181 CAATGGCGAAACTATAATCAGTACCCTTTATTAATCCCATCGTTGGAAGAAGAGCTTGGT 240
||||||||| ||||| ||||||| ||||| || ||||| ||||||| |||||||||||||
Sbjct 284 CAATGGCGAGACTATCATCAGTATCCTTTGTTGATCCCTTCGTTGGGAGAAGAGCTTGGT 343
Query 241 CTTCCCGCCATTGATGTGGAGAATCATCCTCCTCCACAGCAGCggaggaagaggaggaga 300
||| |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 344 CTTACCGCCATTGATGTGGAGAGTCATCCTCCTCCACAGCACCGGAGGAAGAGGAGGAGA 403
Query 301 acgagaaactgcaagaacaaggaagagatcgagaaccagagaaTGACTCACATCGCCGTC 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 404 ACGAGAAACTGCAAGAACAAGGAAGAGATCGAGAACCAGAGAATGACTCACATCGCCGTC 463
Query 361 GAGAGAAATCGCCGGAAACAGATGAACGAGTACCTCGCTGTGCTCCGTTCTCTAATGCCG 420
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 464 GAGAGAAATCGCCGGAAACAGATGAACGAGTATCTGGCTGTGCTCCGTTCTCTAATGCCG 523
Query 421 TTGTCGTATGCTCAAAGAGGAGATCAAGCGTCGATAGTAGGAGGAGCTATTAACTTCGTG 480
| |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 524 TCGTCGTATGCTCAAAGAGGAGATCAAGCGTCGATAGTAGGAGGAGCTATAAACTACGTG 583
Query 481 AAGGAGTTAGAGCATATCTTACAATCTATGGGGCCTAAGAGAACCAGGACCACGTCCACG 540
||||||||||||||||| ||||||||||||| ||| |||||||| ||||| || |
Sbjct 584 AAGGAGTTAGAGCATATTTTACAATCTATGGAGCCGAAGAGAACTAGGAC----TC-A-- 636
Query 541 ACACATGATCCCGAAGGAGCCAATACTAGCACTAGCTCGTTGGTGGGTCCCTTCTCAGAT 600
||||||| |||||| ||| ||||||||||||||||| |||||||| ||| |||||
Sbjct 637 -----TGATCCCAAAGGAGACAAGACTAGCACTAGCTCGTTAGTGGGTCCATTCACAGAT 691
Query 601 TTTTTCAGCTTCCCTCAATATTCTACAAAGTCATCATCAGAAGTACCGGAAAGCTCATCT 660
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 692 TTTTTCAGCTTCCCACAATATTCTACAAAGTCATCATCAGATGTACCGGAAAGCTCATCT 751
Query 661 TCACCAGCGGAGATAGAGGTGACGGTGGCAGAAAGCCACGCGAACATCAAGATACTGGTG 720
||||| |||||||||||||| ||||||||||||||||| ||||||||||||||| || |
Sbjct 752 TCACCGGCGGAGATAGAGGTTACGGTGGCAGAAAGCCATGCGAACATCAAGATAATGACG 811
Query 721 AAGAAGAAACCGAGGCAGCTTCTTAAACTTATAGCTTCTTTACAAAGTCTAAGGCTCACT 780
|||||||||||||||||||||||||| || ||| ||||||||||||| ||||||||||||
Sbjct 812 AAGAAGAAACCGAGGCAGCTTCTTAAGCTCATAACTTCTTTACAAAGCCTAAGGCTCACT 871
Query 781 CTTCTTCATCTTAATGTCACCACTCTCCACAACTCCATTCTCTACTCCATCAGCGTCAGG 840
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 872 CTTCTTCATCTCAATGTCACCACTCTCCACAACTCCATTCTCTACTCCATCAGCGTCAGG 931
Query 841 GTTGAAGAAGGTAGCCAGTTGAATACCGTGGACGACATTGCAACAGCTTTGAATCATACC 900
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 932 GTTGAAGAAGGAAGCCAACTGAATACCGTGGACGACATTGCAACAGCTTTGAATCAAACC 991
Query 901 ATAAGGAGGATTCAGGAAGAGTCGTATTTCAGCAAATAG 939
|||||||||||||| |||||| | || ||||||||||||
Sbjct 992 ATAAGGAGGATTCAAGAAGAGACATAATTCAGCAAATAG 1030
> AT1G72210.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr1:27179790-27182430 FORWARD
LENGTH=1401
Length=1401
Score = 244 bits (132), Expect = 9e-64
Identities = 201/233 (86%), Gaps = 10/233 (4%)
Strand=Plus/Plus
Query 284 ggaggaagaggaggagaacgagaaact-gcaagaacaaggaagagatcgagaaccagaga 342
||||||| |||||||| ||||| | | |||||||||| ||||||||||||||||||||
Sbjct 590 GGAGGAAAAGGAGGAGGACGAG-GAGTAGCAAGAACAAAGAAGAGATCGAGAACCAGAGG 648
Query 343 aTGACTCACATCGCCGTCGAGAGAAATCGCCGGAAACAGATGAACGAGTACCTCGCTGTG 402
||||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||
Sbjct 649 ATGACTCACATCGCCGTTGAAAGAAATCGCCGGAAACAGATGAACGAGTACCTCGCCGTT 708
Query 403 CTCCGTTCTCTAATGCCG--TTGTCGTATGCTCAAAGAGGAGATCAAGCGTCGATAGTAG 460
||||| ||||| ||||| || | ||||||||||| ||||||||||| ||||||||||
Sbjct 709 CTCCGGTCTCTCATGCCACCTTAT--TATGCTCAAAGGGGAGATCAAGCATCGATAGTAG 766
Query 461 GAGGAGCTATTAACTTCGTGAAGGAG-TTAGAGCAT-ATCTTACAATCTATGG 511
| ||||| ||||||| | | |||||| || |||||| || |||||||| ||||
Sbjct 767 GCGGAGCCATTAACTACTTAAAGGAGCTT-GAGCATCAT-TTACAATCAATGG 817
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45914010358
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5