BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg335508
Length=1812
Score E
Sequences producing significant alignments: (Bits) Value
AT1G22660.1 | Symbols: | Polynucleotide adenylyltransferase fa... 2721 0.0
> AT1G22660.1 | Symbols: | Polynucleotide adenylyltransferase
family protein | chr1:8017397-8021712 FORWARD LENGTH=2005
Length=2005
Score = 2721 bits (1473), Expect = 0.0
Identities = 1709/1823 (94%), Gaps = 16/1823 (1%)
Strand=Plus/Plus
Query 1 ATGAGACTG---TCTCTTCCCATCAACACTCTCATAAATCTCCCAAAACCTCTCTTTCTA 57
||||||||| |||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 14 ATGAGACTGTCTTCTCTTCCGATCAACACTCTCATAAATCTCCCAAAATCTCTCTTTCTA 73
Query 58 ATTTCTCCTTTTCGCTACCGTAACCCTAATCGTTCCCTAACCGTCGCGTTTCGCACTTCA 117
|||||||||||||||| |||||||| |||||||||||| |||||||||| ||||| ||||
Sbjct 74 ATTTCTCCTTTTCGCTTCCGTAACCTTAATCGTTCCCTTACCGTCGCGTCTCGCATTTCA 133
Query 118 TCAACGCTTCTTCGCGTTTCCGGTGTCTCCTCTCGTCTGTGTTGTTACTGGTTCCCGACC 177
||||||||||||||||||||||||||||| ||||||| |||| ||||||||||| ||||
Sbjct 134 TCAACGCTTCTTCGCGTTTCCGGTGTCTCGTCTCGTCCGTGTGGTTACTGGTTCTCGACG 193
Query 178 AAGGCGATGACGACGAATGTTGGAGAGGACGATAAGCAATCGATTCCTCCTATCGAATTG 237
|| ||| || |||||||||||||||||| |||||||||||||||||| | |||||||||
Sbjct 194 AACGCGGCGATGACGAATGTTGGAGAGGAAGATAAGCAATCGATTCCTTCAATCGAATTG 253
Query 238 AAGGAGAATATTGAGCTCACTGAAAAAGAACGGAAAATTTTCGACCGGCTTCTTAGTACT 297
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 254 AAGGAGAATATTGAGCTCACTGACAAAGAACGGAAAATTTTCGATCGGCTTCTTAGTACT 313
Query 298 CTCCGTTACTGTAACCTCGACACGCAGCTTCGTGTCGCCGGTGGTTGGGTCCGTGATAAG 357
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 314 CTCCGTTACTGTAACCTTGACACACAGCTTCGTGTCGCCGGTGGTTGGGTCCGTGATAAG 373
Query 358 CTGCTAGGGAAAGACAGTGATGATATTGATATAGCAATTGACAATATGTCTGGAAGTGAA 417
|||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 374 CTGCTAGGGAAAGAGAGTGATGATATTGATATAGCTATTGATAATATGTCTGGAAGTGAA 433
Query 418 TTTCTTGATAAGTTCAAGGAATATTTATCTTCGAGAGATGAAGAAGTACAAGGCGACACT 477
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 434 TTTCTTGATAAGTTTAAGGAATATTTATCTTCGAGAGATGAAGAAGTACAAGGCGACACT 493
Query 478 GTTATTGAAAGAAACCCTGACCAATCCAAACACTTGGAGACAGCAAAGATGCGCATTTAT 537
||||||||||| |||||||||||||| ||||||||||||||||||||| |||| ||||||
Sbjct 494 GTTATTGAAAGGAACCCTGACCAATCTAAACACTTGGAGACAGCAAAGTTGCGGATTTAT 553
Query 538 GACCAATGGATAGATTTTGTGAACTTGAGAAGTGAAGAGTACACAGAGAATAGTCGTATT 597
||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 554 GACCAGTGGATAGATTTTGTTAACTTGAGAAGTGAAGAATACACAGAGAATAGTCGTATT 613
Query 598 CCTACAATGAAATTTGGCACCGCAAAAGAGGATGCTTTTCGTAGAGATTTAACCATAAAT 657
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 614 CCTACAATGAAATTTGGCACCGCAAAAGATGATGCTTTTCGTAGAGATTTAACCATAAAT 673
Query 658 AGTTTATTCTACAACATCAACTCTGGCTCAGTAGAAGACCTTACAGAAAGAGGCATTGAT 717
|||||||||||||| |||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 674 AGTTTATTCTACAATATCAACTCTGGCGCAGTAGAAGACCTTACAGAAAGAGGCATCGAT 733
Query 718 GACCTCAAGTCCGGAAAGATTGTCACACCCTTGCCCGCAAAAGCTACATTTTTGGATGAT 777
||||||||||||||||| ||||| ||||||||||| |||||||| |||||||||||||||
Sbjct 734 GACCTCAAGTCCGGAAAAATTGTTACACCCTTGCCTGCAAAAGCCACATTTTTGGATGAT 793
Query 778 CCTTTGCGAGTTCTCCGGGCTATCCGCTTTGGTGCAAGGTTTGGCTTTACTCTGGATGAA 837
||||||||||||||||||||| | |||||||||||||||||||| |||||| ||||||||
Sbjct 794 CCTTTGCGAGTTCTCCGGGCTGTTCGCTTTGGTGCAAGGTTTGGTTTTACTTTGGATGAA 853
Query 838 GAACTAAAAGAAGCTGCTTCAAGTGAGGAAGTAAGGGTTGCTCTTGGAGAAAAAATTAGC 897
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 854 GAACTAAAAGAAGCTGCTTCAAGTGAGGAAGTAAGGGTAGCTCTTGGAGAAAAAATTAGC 913
Query 898 AGAGAGCGGATTGGGAATGAAATTGACTTGATGATATCTGGGAATGGTCCAGTTTCAGCG 957
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 914 AGAGAGCGGATTGGGAATGAGATTGACTTGATGATATCTGGGAATGGACCAGTTTCAGCG 973
Query 958 GTTACCTATCTTTCTGAGCTGAAATTATTTCCG-GTTGTGTTTTCCCTTCCCTCTTCAGC 1016
||||||||||||||||| |||||| ||||| | ||||| ||| ||||||||||||||||
Sbjct 974 GTTACCTATCTTTCTGACCTGAAACTATTT-AGTGTTGTCTTTGCCCTTCCCTCTTCAGC 1032
Query 1017 TGAGCCTTCACCATCAGAGAATTGTGGCAGCCTCTCCCAAGCTTACTTGGAAGCTATGTG 1076
||||||||||||| |||| ||||||||||||||||||||| | |||||||||||||||||
Sbjct 1033 TGAGCCTTCACCACCAGAAAATTGTGGCAGCCTCTCCCAATCCTACTTGGAAGCTATGTG 1092
Query 1077 GAGCCTGCTTCAAACACCTCGGCTAGGAAATTTCAGTGCTGAACAAAGACGGCTTGGAAT 1136
|||| | ||| |||||||||||| |||||| ||||||| ||||||||||||||||| |
Sbjct 1093 GAGCTTACTTAAAACACCTCGGCCAGGAAAGTTCAGTGGTGAACAAAGACGGCTTGCTCT 1152
Query 1137 GTATGCTGCTATGTTTCTCCCTTTTAGGAAAACTGTATACAAGGACAAGAAGGGCAAATC 1196
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1153 CTATGCTGCTATGTTTCTCCCTTTTAGGAAAACTGTATACAAGGACACTAAGGGCAAATC 1212
Query 1197 GATTCCTGTTGTCAACCACATTTTTAAATTCTCCATGAAGAGGAAGACCAGTGACGCTGA 1256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1213 GATTCCTGTTGTCAACCACATTTTTAAATTCTCCATGAAGAGGAAGACCAGTGACGCTGA 1272
Query 1257 AACAGTTATGAATATACATCAGACTACGGAGAGATTTCGATCGTTGATTCCATCCCTTGA 1316
|||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||
Sbjct 1273 AACAGTTATGAATATACATCAGACCACGGAGAGATTTCGTTCGTTGATTCCTTCCCTTGA 1332
Query 1317 GGCAAAGAACGACGTGGAACTGGACGAGCTTGA-TTGGGCCGC-GTATATTATTGATCAC 1374
| ||||| || || |||||||||||||| | ||||||||| | ||||| |||| ||
Sbjct 1333 AGTGAAGAAAGATGTAGAACTGGACGAGCTA-ACTTGGGCCGCTG-ATATTCTTGAGCAT 1390
Query 1375 TGGAAGGCCATCACCCTTAATGATCCACTGATCCCAGCAACTTCGAAAATAAGAGTACTC 1434
||||| |||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 1391 TGGAAATCCATCACCCTTAATGATCCAGTGATCCCAGCAACTTCAAAAATAAGAGTACTC 1450
Query 1435 ACAGGGTTTCTACTTAGAGATATTAAAGACTTCTGGCGTGTTTCTCTCTTAACATCTTTG 1494
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1451 ACAGGGTTTCTACTTAGAGATATTAAAGACTTCTGGCGTGTTTCTCTGTTAACATCTTTG 1510
Query 1495 TTATTGTCTGCTACGGTTGACGGTATG-AACGAAGATCAAGATATCGGGCAGCTGGACTT 1553
||||||||||||||||||||||||| | ||||| |||||||||||||||||||||||||
Sbjct 1511 TTATTGTCTGCTACGGTTGACGGTA-GCAACGATCATCAAGATATCGGGCAGCTGGACTT 1569
Query 1554 CCAACTGGAAAAGATGCGAGAAACTTATCTGACAGTTGAGGCCACCATTCATGATCTGGG 1613
||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1570 CCAACTGGAAAGGATGCGAGAAACTTATCTGACAGTTGAGGCCACCATTCATGAACTGGG 1629
Query 1614 TCTTGATA-GCATCTGGGATGCAAAGCCTCTAGTGAATGGCAGGGAGATAATGCAGATTG 1672
|||||||| | ||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 1630 TCTTGATAAG-ATCTGGGATGCAAAGCCTCTAGTCAATGGCAGGGAGATAATGCAAATTG 1688
Query 1673 CTGAGCTGAAGGGAGGATCCC---TCATCCGTGAATGGCAACAGAAGCTGCTCACATGGC 1729
||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 1689 CTGAGCTGAAGGGAGGATCCCGGCTCATCCGTGAATGGCAACAGAAGCTGCTCACTTGGC 1748
Query 1730 AGCTGGCTTACCCCAACGGCACCGCAGAGGAGTGCAAGGAGTGGATGAGATATATCAAAG 1789
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1749 AGCTGGCTTACCCCAACGGCACCGCAGAGGAGTGCAAGGAGTGGATGAGAGATATCAAAG 1808
Query 1790 CCAAACGACAAAGGACAGAGTGA 1812
| ||||||||||||| |||||||
Sbjct 1809 CTAAACGACAAAGGATAGAGTGA 1831
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89658173370
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5