BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg335514
Length=1980
Score E
Sequences producing significant alignments: (Bits) Value
AT1G22760.1 | Symbols: PAB3 | poly(A) binding protein 3 | chr1:... 3025 0.0
> AT1G22760.1 | Symbols: PAB3 | poly(A) binding protein 3 | chr1:8055325-8059015
FORWARD LENGTH=2473
Length=2473
Score = 3025 bits (1638), Expect = 0.0
Identities = 1868/1981 (94%), Gaps = 8/1981 (0%)
Strand=Plus/Plus
Query 1 ATGGCGGCGGCGGTTGCGACGGGTGTCGCACCGGCAACAATGGTTGATCAAATTCCGAGT 60
||||||||||||||||| || ||||| |||||||| ||||||||||||||| |||| |||
Sbjct 275 ATGGCGGCGGCGGTTGCCACAGGTGTTGCACCGGCGACAATGGTTGATCAAGTTCCCAGT 334
Query 61 CCGACGGCTCAGACTTCGGTTCAGGTTCCGGTTTCGATACCTGC-TCCATCTCCGG-CAG 118
|||||||| |||||||||||||||||||||||||| |||||| | |||||| |||| | |
Sbjct 335 CCGACGGCGCAGACTTCGGTTCAGGTTCCGGTTTCAATACCT-CTTCCATCCCCGGTC-G 392
Query 119 CGGTTGCCGATCAAACACATCCC-AACTCGTCGCTCTATGCGGGAGATTTGGACCCAAAA 177
||| ||||||||||| || ||| ||||||||||||||||| || ||| ||||||| |||
Sbjct 393 TGGTAGCCGATCAAACCCA-CCCGAACTCGTCGCTCTATGCCGGTGATCTGGACCCGAAA 451
Query 178 GTGACTGAAGCGCATCTGTTCGATTTGTTCAAGCATGTCGCTAATGTTGTTTCGGTAAGA 237
|| |||||||| ||||| || ||||||||||| ||||| |||||||| || |||||||||
Sbjct 452 GTTACTGAAGCACATCTATTTGATTTGTTCAAACATGTTGCTAATGTCGTCTCGGTAAGA 511
Query 238 GTTTGTCGTGACCAGAATCGTCGATCCTTGGGATATGCCTACATCAATTTCAGTAACCCT 297
||||| || || |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 512 GTTTGCCGCGATCAGAATCGTCGATCTTTGGGATATGCCTACATCAATTTCAGTAACCCT 571
Query 298 AATGATGCTTACCGAGCAATGGAGGCTTTGAACTACACTCCCCTCTTTGAAAGGCCCATT 357
|| ||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 572 AACGATGCTTACCGTGCAATGGAGGCCTTGAACTACACTCCCCTCTTTGATAGGCCCATT 631
Query 358 CGGATCATGCTCTCGAACCGTGATCCGAGCACACGATTGAGCGGCAAAGGAAACATTTTC 417
||||||||||| ||||||||||| || ||||| |||||||||||||||||||||||||||
Sbjct 632 CGGATCATGCTTTCGAACCGTGACCCAAGCACGCGATTGAGCGGCAAAGGAAACATTTTC 691
Query 418 ATCAAAAACCTTGATGCTTCAATCGACAACAAGGCATTGTTCGAGACGTTTTCAAGTTTT 477
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 692 ATCAAAAACCTTGACGCTTCAATCGACAACAAGGCCTTGTTCGAGACGTTTTCAAGTTTT 751
Query 478 GGAACCATCCTCTCATGCAAAGTTGCAATGGACGTGACTGGCCGGTCCAAGGGGTATGGA 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 752 GGAACCATCCTCTCATGCAAAGTTGCAATGGACGTGACTGGCCGGTCCAAGGGGTATGGA 811
Query 538 TTTGTCCAGTTTGAGAAGGAGGAATCGGCTCAAGCTGCAATTGACAAGCTAAACGGGATG 597
||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 812 TTTGTCCAGTTCGAGAAGGAGGAATCGGCTCAAGCCGCAATTGACAAGCTAAACGGAATG 871
Query 598 CTAATGAACGACAAGCAAGTCTTTGTGGGACACTTCATCAGACGTCAAGAACGTGCTCGT 657
||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 872 TTAATGAACGACAAGCAAGTTTTTGTGGGACACTTCATCAGACGTCAAGAGCGTGCTCGT 931
Query 658 GATGAAAACACCCCTACACCGCGTTTCACTAATGTGTACGTCAAGAATCTCCCCAAGGAG 717
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 932 GATGAAAACACCCCTACACCGCGTTTCACTAACGTGTACGTCAAGAATCTCCCCAAGGAG 991
Query 718 ATTGGTGAGGACGAGCTACGAAAAACGTTTGGTAAATTTGGAGTGATATCGAGCGCGGTT 777
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 992 ATTGGTGAGGACGAGCTACGAAAAACGTTTGGTAAATTTGGAGTGATATCGAGCGCAGTT 1051
Query 778 GTAATGAGGGACCAGAGCGGGAACTCGAGGTGTTTTGGGTTTGTGAACTTTGAGTGTACT 837
|||||||||||||||||||| |||||||||||||| ||||||||||| |||||||| |||
Sbjct 1052 GTAATGAGGGACCAGAGCGGAAACTCGAGGTGTTTCGGGTTTGTGAATTTTGAGTGCACT 1111
Query 838 GAAGCAGCGGCTTCCGCGGTTGAGAAGATGAATGGAATTAGCTTAGGGGATGATGTGTTG 897
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1112 GAAGCAGCGGCTTCGGCGGTTGAGAAGATGAATGGAATTAGCTTAGGGGATGATGTGTTG 1171
Query 898 TACGTTGGGAGGGCTCAAaagaagtctgagagagaagaagagttaagaagaaagtttgag 957
|||||||||||||| |||||||||||||||||||| |||||| ||||||| |||||||||
Sbjct 1172 TACGTTGGGAGGGCGCAAAAGAAGTCTGAGAGAGAGGAAGAGCTAAGAAGGAAGTTTGAG 1231
Query 958 taggagagGATAAACCGGTTTGAGAAATCACAAGGAGCGAATCTGTATTTGAAGAATCTT 1017
| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 1232 CAAGAGAGGATAAACCGGTTTGAGAAATCTCAAGGAGCGAACCTGTATTTGAAGAATCTT 1291
Query 1018 GATGATAGCGTCGATGATGAGAAACTCAAGGAGATGTTCTCTGAATATGGAAATGTAACA 1077
|||||||| || |||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 1292 GATGATAGTGTTGATGATGAGAAACTCAAGGAGATGTTCTCTGAGTATGGAAATGTGACA 1351
Query 1078 TCTTCCAAGGTTATGCTTAATCCACAAGGATTGAGCAGAGGATTTGGTTTTGTTGCTTAT 1137
|| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1352 TCCTCCAAGGTTATGCTTAATCCACAAGGAATGAGCAGAGGATTTGGTTTTGTTGCTTAT 1411
Query 1138 TCTAATCCTGAAGAAGCTTTAAGAGCACTGAGTGAAATGAATGGGAAGATGATAGGAAAG 1197
|| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |
Sbjct 1412 TCCAATCCTGAAGAAGCTTTAAGAGCCCTGAGTGAAATGAATGGGAAGATGATCGGAA-G 1470
Query 1198 AAA-CCACTATACATAGCTCTTGCGCAGCGCAAAGAAGATAGACGAGCACACTTACAAGC 1256
||| || |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1471 AAAACCTCTATACATAGCTCTTGCGCAGCGCAAAGAAGATAGACGAGCACACTTACAGGC 1530
Query 1257 GCTATTTTCACAGATAAGAGCACCAGGGCCAATGTCGGGGTTCCATCACCCGCCAGGTGG 1316
| | ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1531 GTTGTTTTCACAGATTAGAGCACCAGGGCCAATGTCAGGGTTCCATCACCCGCCAGGTGG 1590
Query 1317 ACCAATGCCGGGTCCACCTCAGCACATGTACGTAGGCCAGAACGGAGCAAGTCTGGTCCC 1376
||||||||| ||||||||||| ||||||||||||||||| |||||||||||| |||||||
Sbjct 1591 ACCAATGCCCGGTCCACCTCAACACATGTACGTAGGCCAAAACGGAGCAAGTATGGTCCC 1650
Query 1377 GTCCCAGCCCATTGGATATGGATTCCAGCCTCAGTTCATGCCCGGGATGCGTCCAGGTTC 1436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1651 GTCCCAGCCCATTGGATATGGATTCCAGCCTCAGTTCATGCCCGGGATGCGTCCAGGTTC 1710
Query 1437 TGGCCCGGGCAACTTCGTCATGCCTTATCCTCTTCAGAGACAACCTCAAACCGGTCCTCG 1496
|||||||||||||||| || |||||||||| ||||| ||||||||||| |||||||||||
Sbjct 1711 TGGCCCGGGCAACTTCATCGTGCCTTATCCGCTTCAAAGACAACCTCAGACCGGTCCTCG 1770
Query 1497 TATGGGATTCAGGCGTGGTGCTACTAACATGCAACACCACATCCAACAACAACAACTTAT 1556
|||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 1771 TATGGGATTCAGGCGTGGTGCTACTAACGTGCAACAACACATCCAACAACAACAACTTAT 1830
Query 1557 GAACCGTAACCCGACCCCGGGAATGAGATATATGAACGGTGAGGGTAACGGGAGGAACGG 1616
| ||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 1831 GCACCGTAACCCGTCCCCGGGAATGAGATATATGAACGGTGCGAGTAACGGGAGGAACGG 1890
Query 1617 AATGGATTCGAGTGTTCCGCAAGGAATCTTGCCTCCAATCATGCCTTTGCCAATAGATGC 1676
|||||||||||||||||| ||||||||||| ||||| ||||| |||||||||||||||||
Sbjct 1891 AATGGATTCGAGTGTTCCTCAAGGAATCTTACCTCCTATCATTCCTTTGCCAATAGATGC 1950
Query 1677 TTCTTCAATTTCTCACCAGAAAGCTCCTCTCCTTCCAATATCTAAGCTCACTTCTTCTTT 1736
|||||| || ||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 1951 TTCTTCGATCTCTCACCAGAAAGCTCCTCTCCTTCCAATCTCTAAGCTCACTTCTTCCTT 2010
Query 1737 AGCTTCTGCTAGTCCAGCTGATCGCACTCGGATGCTTGGAGAGCAACTTTACCCACTTGT 1796
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 2011 AGCTTCTGCTAGTCCAGCTGATCGCACTCGGATGCTTGGAGAACAACTGTACCCACTTGT 2070
Query 1797 GGAAAGGCACGAACCACTTCACGTGGCTAAAGTCACAGGAATGTTGTTGGAGATGGATCA 1856
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2071 GGAAAGGCACGAACCACTTCACGTGGCTAAAGTCACAGGAATGTTGTTGGAGATGGATCA 2130
Query 1857 AGCCGAGATCCTGCACTTGATGGAGTCACCAGAGGCACTCAAGTCTAAAGTATCTGAGGC 1916
||| |||||| ||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2131 AGCTGAGATCTTGCACCTGATGGAGTCACCAGAGGCACTCAAGTCTAAAGTATCCGAGGC 2190
Query 1917 TTTGGATGTTCTCAGGCTATCTGTTGATCCACCTGATCATGAGCTTGGTTTCTCTACCAC 1976
||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct 2191 TTTGGATGTTCTCAGGCTATCTGTTGATCCAACTGATCATGATCTTGGTTTCTCTACCAC 2250
Query 1977 C 1977
|
Sbjct 2251 C 2251
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98091864930
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5