BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg335514 Length=1980 Score E Sequences producing significant alignments: (Bits) Value AT1G22760.1 | Symbols: PAB3 | poly(A) binding protein 3 | chr1:... 3025 0.0 > AT1G22760.1 | Symbols: PAB3 | poly(A) binding protein 3 | chr1:8055325-8059015 FORWARD LENGTH=2473 Length=2473 Score = 3025 bits (1638), Expect = 0.0 Identities = 1868/1981 (94%), Gaps = 8/1981 (0%) Strand=Plus/Plus Query 1 ATGGCGGCGGCGGTTGCGACGGGTGTCGCACCGGCAACAATGGTTGATCAAATTCCGAGT 60 ||||||||||||||||| || ||||| |||||||| ||||||||||||||| |||| ||| Sbjct 275 ATGGCGGCGGCGGTTGCCACAGGTGTTGCACCGGCGACAATGGTTGATCAAGTTCCCAGT 334 Query 61 CCGACGGCTCAGACTTCGGTTCAGGTTCCGGTTTCGATACCTGC-TCCATCTCCGG-CAG 118 |||||||| |||||||||||||||||||||||||| |||||| | |||||| |||| | | Sbjct 335 CCGACGGCGCAGACTTCGGTTCAGGTTCCGGTTTCAATACCT-CTTCCATCCCCGGTC-G 392 Query 119 CGGTTGCCGATCAAACACATCCC-AACTCGTCGCTCTATGCGGGAGATTTGGACCCAAAA 177 ||| ||||||||||| || ||| ||||||||||||||||| || ||| ||||||| ||| Sbjct 393 TGGTAGCCGATCAAACCCA-CCCGAACTCGTCGCTCTATGCCGGTGATCTGGACCCGAAA 451 Query 178 GTGACTGAAGCGCATCTGTTCGATTTGTTCAAGCATGTCGCTAATGTTGTTTCGGTAAGA 237 || |||||||| ||||| || ||||||||||| ||||| |||||||| || ||||||||| Sbjct 452 GTTACTGAAGCACATCTATTTGATTTGTTCAAACATGTTGCTAATGTCGTCTCGGTAAGA 511 Query 238 GTTTGTCGTGACCAGAATCGTCGATCCTTGGGATATGCCTACATCAATTTCAGTAACCCT 297 ||||| || || |||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 512 GTTTGCCGCGATCAGAATCGTCGATCTTTGGGATATGCCTACATCAATTTCAGTAACCCT 571 Query 298 AATGATGCTTACCGAGCAATGGAGGCTTTGAACTACACTCCCCTCTTTGAAAGGCCCATT 357 || ||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||| Sbjct 572 AACGATGCTTACCGTGCAATGGAGGCCTTGAACTACACTCCCCTCTTTGATAGGCCCATT 631 Query 358 CGGATCATGCTCTCGAACCGTGATCCGAGCACACGATTGAGCGGCAAAGGAAACATTTTC 417 ||||||||||| ||||||||||| || ||||| ||||||||||||||||||||||||||| Sbjct 632 CGGATCATGCTTTCGAACCGTGACCCAAGCACGCGATTGAGCGGCAAAGGAAACATTTTC 691 Query 418 ATCAAAAACCTTGATGCTTCAATCGACAACAAGGCATTGTTCGAGACGTTTTCAAGTTTT 477 |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| Sbjct 692 ATCAAAAACCTTGACGCTTCAATCGACAACAAGGCCTTGTTCGAGACGTTTTCAAGTTTT 751 Query 478 GGAACCATCCTCTCATGCAAAGTTGCAATGGACGTGACTGGCCGGTCCAAGGGGTATGGA 537 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 752 GGAACCATCCTCTCATGCAAAGTTGCAATGGACGTGACTGGCCGGTCCAAGGGGTATGGA 811 Query 538 TTTGTCCAGTTTGAGAAGGAGGAATCGGCTCAAGCTGCAATTGACAAGCTAAACGGGATG 597 ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||| Sbjct 812 TTTGTCCAGTTCGAGAAGGAGGAATCGGCTCAAGCCGCAATTGACAAGCTAAACGGAATG 871 Query 598 CTAATGAACGACAAGCAAGTCTTTGTGGGACACTTCATCAGACGTCAAGAACGTGCTCGT 657 ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| Sbjct 872 TTAATGAACGACAAGCAAGTTTTTGTGGGACACTTCATCAGACGTCAAGAGCGTGCTCGT 931 Query 658 GATGAAAACACCCCTACACCGCGTTTCACTAATGTGTACGTCAAGAATCTCCCCAAGGAG 717 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 932 GATGAAAACACCCCTACACCGCGTTTCACTAACGTGTACGTCAAGAATCTCCCCAAGGAG 991 Query 718 ATTGGTGAGGACGAGCTACGAAAAACGTTTGGTAAATTTGGAGTGATATCGAGCGCGGTT 777 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 992 ATTGGTGAGGACGAGCTACGAAAAACGTTTGGTAAATTTGGAGTGATATCGAGCGCAGTT 1051 Query 778 GTAATGAGGGACCAGAGCGGGAACTCGAGGTGTTTTGGGTTTGTGAACTTTGAGTGTACT 837 |||||||||||||||||||| |||||||||||||| ||||||||||| |||||||| ||| Sbjct 1052 GTAATGAGGGACCAGAGCGGAAACTCGAGGTGTTTCGGGTTTGTGAATTTTGAGTGCACT 1111 Query 838 GAAGCAGCGGCTTCCGCGGTTGAGAAGATGAATGGAATTAGCTTAGGGGATGATGTGTTG 897 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1112 GAAGCAGCGGCTTCGGCGGTTGAGAAGATGAATGGAATTAGCTTAGGGGATGATGTGTTG 1171 Query 898 TACGTTGGGAGGGCTCAAaagaagtctgagagagaagaagagttaagaagaaagtttgag 957 |||||||||||||| |||||||||||||||||||| |||||| ||||||| ||||||||| Sbjct 1172 TACGTTGGGAGGGCGCAAAAGAAGTCTGAGAGAGAGGAAGAGCTAAGAAGGAAGTTTGAG 1231 Query 958 taggagagGATAAACCGGTTTGAGAAATCACAAGGAGCGAATCTGTATTTGAAGAATCTT 1017 | |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| Sbjct 1232 CAAGAGAGGATAAACCGGTTTGAGAAATCTCAAGGAGCGAACCTGTATTTGAAGAATCTT 1291 Query 1018 GATGATAGCGTCGATGATGAGAAACTCAAGGAGATGTTCTCTGAATATGGAAATGTAACA 1077 |||||||| || |||||||||||||||||||||||||||||||| ||||||||||| ||| Sbjct 1292 GATGATAGTGTTGATGATGAGAAACTCAAGGAGATGTTCTCTGAGTATGGAAATGTGACA 1351 Query 1078 TCTTCCAAGGTTATGCTTAATCCACAAGGATTGAGCAGAGGATTTGGTTTTGTTGCTTAT 1137 || ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1352 TCCTCCAAGGTTATGCTTAATCCACAAGGAATGAGCAGAGGATTTGGTTTTGTTGCTTAT 1411 Query 1138 TCTAATCCTGAAGAAGCTTTAAGAGCACTGAGTGAAATGAATGGGAAGATGATAGGAAAG 1197 || ||||||||||||||||||||||| |||||||||||||||||||||||||| |||| | Sbjct 1412 TCCAATCCTGAAGAAGCTTTAAGAGCCCTGAGTGAAATGAATGGGAAGATGATCGGAA-G 1470 Query 1198 AAA-CCACTATACATAGCTCTTGCGCAGCGCAAAGAAGATAGACGAGCACACTTACAAGC 1256 ||| || |||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1471 AAAACCTCTATACATAGCTCTTGCGCAGCGCAAAGAAGATAGACGAGCACACTTACAGGC 1530 Query 1257 GCTATTTTCACAGATAAGAGCACCAGGGCCAATGTCGGGGTTCCATCACCCGCCAGGTGG 1316 | | ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1531 GTTGTTTTCACAGATTAGAGCACCAGGGCCAATGTCAGGGTTCCATCACCCGCCAGGTGG 1590 Query 1317 ACCAATGCCGGGTCCACCTCAGCACATGTACGTAGGCCAGAACGGAGCAAGTCTGGTCCC 1376 ||||||||| ||||||||||| ||||||||||||||||| |||||||||||| ||||||| Sbjct 1591 ACCAATGCCCGGTCCACCTCAACACATGTACGTAGGCCAAAACGGAGCAAGTATGGTCCC 1650 Query 1377 GTCCCAGCCCATTGGATATGGATTCCAGCCTCAGTTCATGCCCGGGATGCGTCCAGGTTC 1436 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1651 GTCCCAGCCCATTGGATATGGATTCCAGCCTCAGTTCATGCCCGGGATGCGTCCAGGTTC 1710 Query 1437 TGGCCCGGGCAACTTCGTCATGCCTTATCCTCTTCAGAGACAACCTCAAACCGGTCCTCG 1496 |||||||||||||||| || |||||||||| ||||| ||||||||||| ||||||||||| Sbjct 1711 TGGCCCGGGCAACTTCATCGTGCCTTATCCGCTTCAAAGACAACCTCAGACCGGTCCTCG 1770 Query 1497 TATGGGATTCAGGCGTGGTGCTACTAACATGCAACACCACATCCAACAACAACAACTTAT 1556 |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| Sbjct 1771 TATGGGATTCAGGCGTGGTGCTACTAACGTGCAACAACACATCCAACAACAACAACTTAT 1830 Query 1557 GAACCGTAACCCGACCCCGGGAATGAGATATATGAACGGTGAGGGTAACGGGAGGAACGG 1616 | ||||||||||| ||||||||||||||||||||||||||| | |||||||||||||||| Sbjct 1831 GCACCGTAACCCGTCCCCGGGAATGAGATATATGAACGGTGCGAGTAACGGGAGGAACGG 1890 Query 1617 AATGGATTCGAGTGTTCCGCAAGGAATCTTGCCTCCAATCATGCCTTTGCCAATAGATGC 1676 |||||||||||||||||| ||||||||||| ||||| ||||| ||||||||||||||||| Sbjct 1891 AATGGATTCGAGTGTTCCTCAAGGAATCTTACCTCCTATCATTCCTTTGCCAATAGATGC 1950 Query 1677 TTCTTCAATTTCTCACCAGAAAGCTCCTCTCCTTCCAATATCTAAGCTCACTTCTTCTTT 1736 |||||| || ||||||||||||||||||||||||||||| ||||||||||||||||| || Sbjct 1951 TTCTTCGATCTCTCACCAGAAAGCTCCTCTCCTTCCAATCTCTAAGCTCACTTCTTCCTT 2010 Query 1737 AGCTTCTGCTAGTCCAGCTGATCGCACTCGGATGCTTGGAGAGCAACTTTACCCACTTGT 1796 |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| Sbjct 2011 AGCTTCTGCTAGTCCAGCTGATCGCACTCGGATGCTTGGAGAACAACTGTACCCACTTGT 2070 Query 1797 GGAAAGGCACGAACCACTTCACGTGGCTAAAGTCACAGGAATGTTGTTGGAGATGGATCA 1856 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2071 GGAAAGGCACGAACCACTTCACGTGGCTAAAGTCACAGGAATGTTGTTGGAGATGGATCA 2130 Query 1857 AGCCGAGATCCTGCACTTGATGGAGTCACCAGAGGCACTCAAGTCTAAAGTATCTGAGGC 1916 ||| |||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||| Sbjct 2131 AGCTGAGATCTTGCACCTGATGGAGTCACCAGAGGCACTCAAGTCTAAAGTATCCGAGGC 2190 Query 1917 TTTGGATGTTCTCAGGCTATCTGTTGATCCACCTGATCATGAGCTTGGTTTCTCTACCAC 1976 ||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| Sbjct 2191 TTTGGATGTTCTCAGGCTATCTGTTGATCCAACTGATCATGATCTTGGTTTCTCTACCAC 2250 Query 1977 C 1977 | Sbjct 2251 C 2251 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 98091864930 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5