BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg335523
Length=1458
Score E
Sequences producing significant alignments: (Bits) Value
AT1G22880.1 | Symbols: ATGH9B4, ATCEL5, CEL5 | cellulase 5 | ch... 2252 0.0
AT1G71380.1 | Symbols: ATGH9B3, ATCEL3, CEL3 | cellulase 3 | ch... 1299 0.0
> AT1G22880.1 | Symbols: ATGH9B4, ATCEL5, CEL5 | cellulase 5 |
chr1:8095502-8097709 FORWARD LENGTH=1893
Length=1893
Score = 2252 bits (1219), Expect = 0.0
Identities = 1379/1458 (95%), Gaps = 3/1458 (0%)
Strand=Plus/Plus
Query 1 ATGGCTTCTCCTTTCTTCTTTGTGTTCCTCCTTCTCTCTGCACTTTCACTGGAGAATACC 60
|||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||||
Sbjct 269 ATGGCTTCTCCTTTCTTCTTTGTG-T--TCCTTCTCTCTGCGCTTTCACTGGAGAATACC 325
Query 61 TATGCCAGTCCCGATTACAGAGAAGCACTCTCAAAGTCATTACTCTTTTTCCAAGGTCAG 120
||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 326 TATGCAAGTCCCAATTACAGAGAAGCACTCTCAAAGTCATTACTCTTTTTCCAAGGTCAG 385
Query 121 CGGTCTGGTCGCCTCCCCCGTGACCAAAAACTCTCATGGAGGTCGAGCTCTGGCCTCTCT 180
||||||||||||||||| |||||||| |||||||||||||||| |||||||||||||||
Sbjct 386 CGGTCTGGTCGCCTCCCTAGTGACCAACAACTCTCATGGAGGTCTAGCTCTGGCCTCTCT 445
Query 181 GATGGCTCCTCTGCTCATGTGGACTTGACCGGAGGCTACTATGATGCTGGGGACAATGTG 240
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 446 GATGGCTCATCTGCTCACGTGGACTTGACCGGAGGCTACTATGATGCTGGGGACAATGTG 505
Query 241 AAGTTCAATTTCCCGATGGCGTTCACCACTACGATGCTCTCCTGGAGCTCTTTGGAGTAC 300
||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||
Sbjct 506 AAGTTCAATTTCCCGATGGCGTTCACCACAACCATGCTTTCCTGGAGCTCTTTGGAGTAC 565
Query 301 GGTAAGAAGATGGGATCCGAACTCCAGAACTCTCGTGTGGCCATCCGTTGGGCCACAGAC 360
||||||||||||||| |||| ||||||||||| ||||||||||||||||||||||| ||
Sbjct 566 GGTAAGAAGATGGGACCCGAGCTCCAGAACTCCCGTGTGGCCATCCGTTGGGCCACGGAT 625
Query 361 TATCTACTGAAATGTGCCAGGGCCACACCCGGGAAGCTTTATGTTGGTGTAGGAGACCCT 420
||||||||||||||||||||||| ||||| ||||||||||| ||||| |||||||| |||
Sbjct 626 TATCTACTGAAATGTGCCAGGGCTACACCAGGGAAGCTTTACGTTGGAGTAGGAGATCCT 685
Query 421 AATGGTGATCACAAGTGTTGGGAACGCCCAGAAGATATGGACACTCCTCGCACAGTCTAC 480
|||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 686 AATGGTGACCACAAGTGCTGGGAACGACCAGAAGATATGGACACTCCTCGCACAGTCTAC 745
Query 481 TCTGTCTCTCCCTCAAACCCTGGCTCTGATGTAGCCGCTGAAACCGCTGCTGCTCTAGCT 540
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 746 TCTGTATCTCCCTCAAACCCTGGCTCTGATGTAGCCGCTGAAACCGCTGCTGCTCTAGCT 805
Query 541 GCAAGCTCCATGGTTTTCAGGAAAGTTGATCCCAAGTACTCTCGCTTGCTCCTGGTGACA 600
|||||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||
Sbjct 806 GCAAGCTCCATGGTTTTCAGGAAAGTAGATCCCAAGTACTCTCGCTTGCTCTTGGCGACA 865
Query 601 GCGAAGAAGGTCATGCAGTTCGCAATTCAATACCAAGGCGCTTATAGTGACTCCCTTTCC 660
|| ||||||||||||||||| || |||||||||| ||||||||| ||| | |||||||||
Sbjct 866 GCAAAGAAGGTCATGCAGTTTGCCATTCAATACCGAGGCGCTTACAGTAATTCCCTTTCC 925
Query 661 TCTTCCGTCTGTCCTTTTTACTGCTCCTACTCTGGCTACAAGGACGAGCTGGTATGGGGA 720
|||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||
Sbjct 926 TCTTCCGTCTGTCCGTTCTACTGCTCCTACTCTGGCTACAAGGACGAGCTACTATGGGGA 985
Query 721 GCGGCATGGCTGCATAGAGCAACCAACGACCCGTATTACACAAACTTCATAAAATCCTTA 780
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 986 GCAGCATGGCTACATAGAGCAACCAACGACCCGTATTACACAAACTTCATAAAATCCTTA 1045
Query 781 GGAGGTGGAGATCAGCCTGACATCTTCAGTTGGGACAATAAATACGCCGGTGCCTATGTT 840
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1046 GGAGGAGGAGATCAGCCTGACATCTTCAGTTGGGACAATAAATACGCCGGTGCCTATGTT 1105
Query 841 CTTCTCTCACGAAGAGCAGTACTGAACAAAGACAACAACTTTGAGCCCTACAAGCAAGCA 900
|||||||||||| |||||||||| |||||||||||||||||||| | |||||||||||||
Sbjct 1106 CTTCTCTCACGACGAGCAGTACTAAACAAAGACAACAACTTTGAACTCTACAAGCAAGCA 1165
Query 901 GCTGAGAATTTCATGTGCAAGATCCTTCCAAATTCTCCCTCCTCGTCAACAAAGTACACT 960
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 1166 GCTGAGAATTTCATGTGTAAGATCCTTCCAAATTCTCCATCCTCGTCAACAAAGTACACT 1225
Query 961 AAAGGTGGATTGATGTACAAATTACCTCAGAGCAATCTACAATACGTGACATCGATAACA 1020
||||||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 1226 AAAGGTGGACTGATGTACAAACTACCTCAGAGCAATCTACAATACGTGACATCAATAACA 1285
Query 1021 TTCTTGCTCACGACCTACGCCAAATACATGAAATCCACGAAACACACCTTCAACTGCGGA 1080
||||||||||| |||||||||||||| ||||||||||| ||||| || ||||||||||||
Sbjct 1286 TTCTTGCTCACCACCTACGCCAAATATATGAAATCCACAAAACAAACTTTCAACTGCGGA 1345
Query 1081 AACTCACTCATCGTCCCCAATGCACTGATAAATCTATCGAAGCGACAAGTCGATTACATA 1140
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 1346 AACTCACTAATCGTCCCCAACGCACTGATAAATCTATCGAAGCGACAAGTCGATTACGTC 1405
Query 1141 CTCGGTGTGAACCCAATGAAGATGTCGTACATGGTTGGATTCAGCTCCAATTTCCCCAAG 1200
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1406 CTCGGTGTGAATCCAATGAAGATGTCGTACATGGTTGGATTCAGCTCCAATTTCCCCAAA 1465
Query 1201 AGAATCCATCACAGAGGATCCTCACTCCCGAGCAGAGCCGTCCGTTCCAATTCTCTCGGC 1260
||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||| |||
Sbjct 1466 AGAATCCATCACAGAGGTTCCTCTCTCCCGAGCCGAGCCGTCCGTTCCAATTCTCTGGGC 1525
Query 1261 TGCAACGGCGGATTCCAATCGTTCAGAACACAAAACCCTAACCCTAACATATTAACCGGA 1320
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1526 TGTAACGGCGGATTCCAATCATTCAGAACACAAAACCCTAACCCTAACATATTAACCGGA 1585
Query 1321 GCAATCGTCGGAGGACCGAATCAAAACGATGAGTATCCAGATCAGAGAGACGATTACACC 1380
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1586 GCAATTGTCGGAGGACCGAATCAAAACGATGAGTATCCAGACCAGAGAGACGATTACACC 1645
Query 1381 AGATCTGAGCCAGCTACTTACATCAACGCTGCATTCGTCGGACCATTGGCGTATTTCGCC 1440
|||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1646 CGATCAGAGCCAGCTACATACATCAACGCCGCATTCGTCGGACCATTGGCGTATTTCGCC 1705
Query 1441 GCCGGCCGATCGCCGTAA 1458
||| ||||||||||||||
Sbjct 1706 GCCAGCCGATCGCCGTAA 1723
> AT1G71380.1 | Symbols: ATGH9B3, ATCEL3, CEL3 | cellulase 3 |
chr1:26899784-26901789 REVERSE LENGTH=1700
Length=1700
Score = 1299 bits (703), Expect = 0.0
Identities = 1229/1478 (83%), Gaps = 55/1478 (4%)
Strand=Plus/Plus
Query 1 ATGGCTTCTCCTTTCTTCTTTGTGTTCCTCCTTCTCTCTG-CACTT-TCACTGGAG-AAT 57
||| |||||| ||||||| || |||| |||||| |||| | | ||| ||| | || |||
Sbjct 41 ATGACTTCTCTTTTCTTC-TT-TGTT-CTCCTTTTCTC-GTCTCTTCTCA-T-AAGCAAT 94
Query 58 ACCTATGCCAGTCCC-GATTACAGAGAAGCACTCTCAAAGTCATTACTCTTTTTCCAAGG 116
| |||||| ||| |||||| |||||| ||||| |||||||| ||||| ||||||||
Sbjct 95 GGCGATGCCA-ACCCAAATTACAAAGAAGCTCTCTCCAAGTCATTGCTCTTCTTCCAAGG 153
Query 117 TCAGCGGTCTGGTCGC-CTCCCCCGTGACCAA-AAACTCTCATGGAGGTCGAGCTCTGGC 174
|||||| ||||||| | || || | | |||| ||| | || |||||| | |||||||||
Sbjct 154 TCAGCGATCTGGTC-CTCTTCCTAGAGGCCAACAAA-TTTCCTGGAGGGCTAGCTCTGGC 211
Query 175 CTCTCTGATGGCTCCT-CTGCTCATGTGGACTTGACCGGAGGCTACTATGATGCTGGGGA 233
|| || ||||||| || |||||||||||||||| ||||| || |||||||| || || ||
Sbjct 212 CTTTCCGATGGCT-CTGCTGCTCATGTGGACTTAACCGGCGGGTACTATGACGCAGGAGA 270
Query 234 CAATGTGAAGTTCAATTTCCCGATGGCGTTCACCACTACGATGCTCTCCTGGAGCTCTTT 293
||| || ||||||||||| || |||||||| ||||| || |||||||| |||||| | |
Sbjct 271 CAACGTCAAGTTCAATTTACCAATGGCGTTTACCACCACAATGCTCTCATGGAGCGCACT 330
Query 294 GGAGTACGGTAAGA-AGATGGGATCC-GAACTCCAGAACT-CTCGTGTGGCCATCCGTTG 350
||| |||||||| | |||||| ||| || || | || | | |||||| |||||||||
Sbjct 331 GGAATACGGTAA-ACGGATGGG-TCCTGAGCTGGA-AAATGCACGTGTGAACATCCGTTG 387
Query 351 GGCCACAGACTATCTACTGAAATGTGCCAGGGCCACACCCGGGAAGCTTTATGTTGGTGT 410
||||||||| ||||| |||||||||||||| ||||| || |||||||||||||| |||||
Sbjct 388 GGCCACAGATTATCTGCTGAAATGTGCCAGAGCCACGCCGGGGAAGCTTTATGTCGGTGT 447
Query 411 AGGAGACCCTAATGGTGATCACAAGTGTTGGGAACGCCCAGAAGATATGGACACTCCTCG 470
|||||| ||||||| ||||||||| || |||||||| || ||||| |||||||| || ||
Sbjct 448 AGGAGATCCTAATGTTGATCACAAATGCTGGGAACGGCCTGAAGACATGGACACACCACG 507
Query 471 CACAGTCTACTCTGTCTCTC-CCTCAAACCCTGGCTCTGATGTAGCCGCTGAAACCGCTG 529
||||| |||||||| || | | || || ||||| |||||||| || |||||||| || |
Sbjct 508 TACAGTTTACTCTGTATC-CGCTTCCAATCCTGGTTCTGATGTCGCAGCTGAAACAGCAG 566
Query 530 CTGCTCTAGCTGCAAGC-TCCATGGTTTTCAGGAAAGTTGATCCCAAGTACTCTCGCTTG 588
| ||||||||||| ||| || ||||||||||| ||||||||| ||||||| || || |||
Sbjct 567 CAGCTCTAGCTGC-AGCTTCTATGGTTTTCAGAAAAGTTGATTCCAAGTATTCACGTTTG 625
Query 589 CTCCTGGTGACAGCGAAGAAGGTCATGCAGTTCGCAATTCAATACCAAGGCGCTTATAGT 648
|| || | ||||| ||| | || |||||||| || ||||| ||||| || ||||| |||
Sbjct 626 CTGCTCGCAACAGCTAAGGATGTGATGCAGTTTGCCATTCAGTACCAGGGAGCTTACAGT 685
Query 649 GACTCCCTTTCCTCTTCCGTCTGTCCTTTTTACTGCTCCTACTCTGGCTACAAGGACGAG 708
|| ||||||||||| || ||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 686 GATTCCCTTTCCTCATCTGTCTGTCCTTTCTACTGCTCCTACTCTGGTTACAAGGACGAG 745
Query 709 CTGGTATGGGGAGCGGCATGGCTGCAT-AGAGCAACCAACGACCCGTATTACACAAACTT 767
|| | ||||| ||| ||||||||| | |||||||| || ||||||||||| |||||||
Sbjct 746 CTAATGTGGGGTGCGTCATGGCTGC-TAAGAGCAACGAATAACCCGTATTACGCAAACTT 804
Query 768 CATAAAATCCTTAGGAGGTGGAGATCAGCCTGACATCTTCAGTTGGGACAATAAATACGC 827
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 805 CATAAAATCTTTAGGAGGTGGAGATCAGCCTGACATCTTCAGCTGGGACAATAAATATGC 864
Query 828 CGGTGCCTATGTTCTTCTCTCACGAAGAGCAGTACTGAACAAAGACAACAACTTTGAGCC 887
||||||||||||||||||||||| |||||| |||| |||||||||| ||||||||| |
Sbjct 865 TGGTGCCTATGTTCTTCTCTCACGGAGAGCATTACTTAACAAAGACAGCAACTTTGAACA 924
Query 888 CTACAAGCAAGCAGCTGAGAATTTCATGTGCAAGATCCTTCCAAATTCTCCCTCCTCGTC 947
|| ||||||||||||||||||||||| ||||| ||||||||| ||||||| || || ||
Sbjct 925 ATATAAGCAAGCAGCTGAGAATTTCATCTGCAAAATCCTTCCAGATTCTCCTTCTTCCTC 984
Query 948 AACA-AAGTACACTAAAGGTGGATTGATGTACAAATTACCTCAGAGCAATCTACAATACG 1006
|| || |||||| |||| ||||| |||||||| ||||||| |||||||| || ||||
Sbjct 985 TACCCAA-TACACTCAAGGAGGATTAATGTACAAGCTACCTCAAAGCAATCTTCAGTACG 1043
Query 1007 TGACATCGATAACATTCTTGCTCACGACCTACGCCAAATACATGAAATCCACGAAACACA 1066
| || || ||||||||||||||||| || |||||||||||||||||| |||| |||||||
Sbjct 1044 TAACCTCCATAACATTCTTGCTCACAACTTACGCCAAATACATGAAAGCCACAAAACACA 1103
Query 1067 CCTTCAACTGCGGAAACTCAC-TCATCGTCCCCAATGCACT-GATAAATCTATCGAAGCG 1124
| ||||| ||||||| ||| | | ||||||||||| || || ||||| |||||||||||
Sbjct 1104 CATTCAATTGCGGAAGCTC-CGTTATCGTCCCCAACGC-CTTGATAAGCCTATCGAAGCG 1161
Query 1125 ACAAGTCGATTACATACTCGGTG-TGAACCCAATGAAGATGTCGTACATGGTTGGATTCA 1183
|||||| |||||||||||||| | | |||||||| || ||||| |||||||||||||||
Sbjct 1162 ACAAGTTGATTACATACTCGGAGAT-AACCCAATCAAAATGTCATACATGGTTGGATTCT 1220
Query 1184 GCT-CCAATTTCCCCAAGAGAATCCATCACAGAGGATCCTCACTCCCGAGCAGA-GC-CG 1240
|| |||||||||| ||||||||||| ||||||| ||| || || || || | || |
Sbjct 1221 -CTTCCAATTTCCCTAAGAGAATCCACCACAGAGCATCTTCTCTTCCTT-CACACGCACT 1278
Query 1241 TCCGTTC-CAATTC-TCTCGGCTGCAACGGCGGATTCCAATCGTTC-AGAACACAAAACC 1297
|| |||| |||| | | | |||||||| || ||||||||||||||| | | | |||||||
Sbjct 1279 TC-GTTCTCAAT-CGT-TAGGCTGCAATGGTGGATTCCAATCGTTCTACA-CTCAAAACC 1334
Query 1298 CTAACCCTAACATAT-TAACCGGAGCAATCGTCGGAGGACCGAATCAAAACGATGAGTAT 1356
||||||||||||| | | |||||||||||||| ||||| |||||||||||||||| ||||
Sbjct 1335 CTAACCCTAACAT-TCTCACCGGAGCAATCGTAGGAGGTCCGAATCAAAACGATGGGTAT 1393
Query 1357 CCAGATCAGAGAGACGATTACAC-CA-GATCTGAGCCAGCTACTTACATCAACGCTGCAT 1414
|||||||||||||||||||| | || | | || || || ||||| || ||||| || |
Sbjct 1394 CCAGATCAGAGAGACGATTATAGTCACG--CGGAACCGGCGACTTATATAAACGCCGCCT 1451
Query 1415 TCGTCGGACCATTGGCGTATTTCGCCGCCGGCCGATCG 1452
|||||||||| |||||||| |||||||||||||| |||
Sbjct 1452 TCGTCGGACCTTTGGCGTACTTCGCCGCCGGCCGTTCG 1489
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71887180440
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5