BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg335550
Length=2007
Score E
Sequences producing significant alignments: (Bits) Value
AT1G22260.1 | Symbols: ZYP1a, ZYP1 | Myosin heavy chain-related... 579 5e-164
AT1G22275.1 | Symbols: ZYP1b, ZYP1 | Myosin heavy chain-related... 534 1e-150
> AT1G22260.1 | Symbols: ZYP1a, ZYP1 | Myosin heavy chain-related
protein | chr1:7859630-7865249 REVERSE LENGTH=2953
Length=2953
Score = 579 bits (313), Expect = 5e-164
Identities = 349/367 (95%), Gaps = 0/367 (0%)
Strand=Plus/Plus
Query 528 GATTCTCAGTATTCGGGAGGAGCATGAGAGTAAGGAGCTGAATCTCAAAGCCAAGTATGA 587
|||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1970 GATTCTCAGTCTTCGGGAGGAGCATGAGAGTAAGGAGCTCAATCTCAAAGCCAAGTATGA 2029
Query 588 CCAGGAACTGAGACAAAATCAGATTCAGGCTGAAAGTGAACTGAAAGAGAGGATAACAGC 647
||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 2030 CCAGGAACTGAGACAAAGTCAGATTCAGGCTGAAAACGAACTGAAAGAGAGGATAACAGC 2089
Query 648 TCTCAAGAGTGAGCATGATGTTCAGTTGAAAGCATTCAAGTGTCAGTATGAAGATGATTG 707
||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 2090 TCTGAAGAGTGAGCATGATGCTCAGTTGAAAGCATTCAAGTGTCAGTATGAAGATGACTG 2149
Query 708 CAAGAAGCTGCAAGAAGAATTAGATCTTCAAAGGAAAAAAGAAGAGAAGCAAAGAGCTTT 767
||||||||| ||||||||||||||||||||||||||||| ||||||| |||| |||||||
Sbjct 2150 CAAGAAGCTTCAAGAAGAATTAGATCTTCAAAGGAAAAAGGAAGAGAGGCAACGAGCTTT 2209
Query 768 GGTGCAGTTACAGTGGAAGGTGATGAGTGACAATCCACCTGAAGAGCAAGAAGTAAACTC 827
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2210 GGTGCAGTTACAGTGGAAGGTGATGAGTGACAATCCACCTGAAGAGCAAGAAGTAAACTC 2269
Query 828 AAACAAGGACTATTCAGTTTCCAAAGATTCTCGTTTTGGTGGTAGCAAAAGAAGAGAGCA 887
||||||| |||||||| |||| ||||||||||| ||||||||||||||||||| |||||
Sbjct 2270 AAACAAGAACTATTCAATTTCGAAAGATTCTCGCCTTGGTGGTAGCAAAAGAAGCGAGCA 2329
Query 888 TATAAGA 894
|||||||
Sbjct 2330 TATAAGA 2336
Score = 398 bits (215), Expect = 1e-109
Identities = 267/293 (91%), Gaps = 0/293 (0%)
Strand=Plus/Plus
Query 187 ACTGCTGAAACTAAGCTTGTAGAAGCAAAGAAGCAATATGATCTGATGCTGGAAAGTAAA 246
||||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||
Sbjct 1680 ACTGCTGAAACTAAGCTTGCAGAAGCAAAGAAGCAATATGACCTGATGCTAGAAAGTAAA 1739
Query 247 CAGTTGGAATTATCAAGGCACTTGAAAGAATTATCACAGAGGAACGACCAGGCAATTAAC 306
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1740 CAGTTGGAATTGTCAAGGCACTTAAAAGAATTATCACAGAGGAACGACCAGGCAATTAAT 1799
Query 307 GATATCAAGAGGAAGTATGATGTTGAGAAGCAGGAAATCATTAGTTCTGAAAAGGGCAAG 366
|| |||| ||||||||||||||| |||||||| || || |||| ||||||||| | ||||
Sbjct 1800 GAGATCAGGAGGAAGTATGATGTAGAGAAGCATGAGATTATTAATTCTGAAAAAGACAAG 1859
Query 367 GTTGAAGAGACTATCAAAGAGCTGTCTACTAAATATGATGAAGAACTCTCAGATTGCAAA 426
|||||| | | ||||||||| |||| | ||||| |||| ||||||||||||||||||||
Sbjct 1860 GTTGAAAAAATTATCAAAGATTTGTCCAATAAATTTGATAAAGAACTCTCAGATTGCAAA 1919
Query 427 GAAGAATCAAAGAGGCAGCTGCTGACCATTCAAGAGGAACATGCTTCTCTGAT 479
||||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 1920 GAAGAATCAAAGAGGCAACTGCTGACCATTCAAGAGGAACATTCTTCTCTGAT 1972
> AT1G22275.1 | Symbols: ZYP1b, ZYP1 | Myosin heavy chain-related
protein | chr1:7867133-7872618 FORWARD LENGTH=2874
Length=2874
Score = 534 bits (289), Expect = 1e-150
Identities = 307/316 (97%), Gaps = 0/316 (0%)
Strand=Plus/Plus
Query 528 GATTCTCAGTATTCGGGAGGAGCATGAGAGTAAGGAGCTGAATCTCAAAGCCAAGTATGA 587
|||||||| ||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 1975 GATTCTCAATATTCGGGAGGAGCACGAGAGTAAGGAGCTCAATCTCAAAGCCAAGTATGA 2034
Query 588 CCAGGAACTGAGACAAAATCAGATTCAGGCTGAAAGTGAACTGAAAGAGAGGATAACAGC 647
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2035 CCAGGAACTGAGACAAAATCAGATTCAGGCTGAAAATGAACTGAAAGAGAGGATAACAGC 2094
Query 648 TCTCAAGAGTGAGCATGATGTTCAGTTGAAAGCATTCAAGTGTCAGTATGAAGATGATTG 707
||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 2095 TCTGAAGAGTGAGCATGATGCTCAGTTGAAAGCATTCAAGTGTCAGTATGAAGATGACTG 2154
Query 708 CAAGAAGCTGCAAGAAGAATTAGATCTTCAAAGGAAAAAAGAAGAGAAGCAAAGAGCTTT 767
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2155 CAAGAAGCTGCAAGAAGAATTAGATCTTCAAAGGAAAAAAGAAGAGAGGCAAAGAGCTTT 2214
Query 768 GGTGCAGTTACAGTGGAAGGTGATGAGTGACAATCCACCTGAAGAGCAAGAAGTAAACTC 827
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2215 GGTGCAGTTACAGTGGAAGGTGATGAGTGACAATCCACCTGAGGAGCAAGAAGTAAACTC 2274
Query 828 AAACAAGGACTATTCA 843
||||||||||||||||
Sbjct 2275 AAACAAGGACTATTCA 2290
Score = 409 bits (221), Expect = 6e-113
Identities = 269/293 (92%), Gaps = 0/293 (0%)
Strand=Plus/Plus
Query 187 ACTGCTGAAACTAAGCTTGTAGAAGCAAAGAAGCAATATGATCTGATGCTGGAAAGTAAA 246
||||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||
Sbjct 1685 ACTGCTGAAACTAAGCTTGCAGAAGCAAAGAAGCAATATGACCTGATGCTAGAAAGTAAA 1744
Query 247 CAGTTGGAATTATCAAGGCACTTGAAAGAATTATCACAGAGGAACGACCAGGCAATTAAC 306
||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 1745 CAGTTGGAATTATCAAGGCACTTAAAAGAATTATCACAGAGGAATGACCAGGCAATTAAT 1804
Query 307 GATATCAAGAGGAAGTATGATGTTGAGAAGCAGGAAATCATTAGTTCTGAAAAGGGCAAG 366
|| |||| ||||||||||||||| |||||||| || || |||| ||||||||||| ||||
Sbjct 1805 GAGATCAGGAGGAAGTATGATGTAGAGAAGCATGAGATTATTAATTCTGAAAAGGACAAG 1864
Query 367 GTTGAAGAGACTATCAAAGAGCTGTCTACTAAATATGATGAAGAACTCTCAGATTGCAAA 426
|||||| | | ||||||||||||||| |||||||||||| ||| ||||||||||||||||
Sbjct 1865 GTTGAAAAAATTATCAAAGAGCTGTCCACTAAATATGATAAAGGACTCTCAGATTGCAAA 1924
Query 427 GAAGAATCAAAGAGGCAGCTGCTGACCATTCAAGAGGAACATGCTTCTCTGAT 479
||||||||||||||||| ||||| |||||||||||||||||| |||||| |||
Sbjct 1925 GAAGAATCAAAGAGGCAACTGCTAACCATTCAAGAGGAACATTCTTCTCGGAT 1977
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 99447279645
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5