BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg335552

Length=456
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G23130.1 | Symbols:  | Polyketide cyclase/dehydrase and lipi...   479    1e-134


> AT1G23130.1 | Symbols:  | Polyketide cyclase/dehydrase and lipid 
transport superfamily protein | chr1:8200383-8201235 FORWARD 
LENGTH=772
Length=772

 Score =  479 bits (259),  Expect = 1e-134
 Identities = 416/486 (86%), Gaps = 33/486 (7%)
 Strand=Plus/Plus

Query  1    ATGGCACAAGCTATGCGTCAGTCTTCTCTGCAAGGGGAGCTTGAGGTAGATGTTGAGATC  60
            ||||||||||||| ||||||||||||||| |||||||| |||||||||||| ||||||||
Sbjct  52   ATGGCACAAGCTACGCGTCAGTCTTCTCTACAAGGGGAACTTGAGGTAGATATTGAGATC  111

Query  61   AAAGCATCTGCAAAGAAGTTCCATCAGATGCTCTCTAGAAGACCACAAGATATTGCAAAA  120
            |||||||| ||||||||||||||||| ||||||||| |||||||||||||| |||| |||
Sbjct  112  AAAGCATCGGCAAAGAAGTTCCATCACATGCTCTCTGGAAGACCACAAGATGTTGCGAAA  171

Query  121  GCCACTCCTGACATCCAAGGATGTGCTTTGCATGA-GG-GA-----G---AGTTTGGCA-  169
            ||||||||||||||||| ||||||||||||||||| || ||     |   || |||||| 
Sbjct  172  GCCACTCCTGACATCCAGGGATGTGCTTTGCATGAGGGAGAGTTTGGCAAAG-TTGGCAG  230

Query  170  ----A-AGT-T-G------GC-A---ATGGGCAGCCAAAGGTGGGGAAGGAGAGGATCGA  212
                | | | | |      || |   |||||||||| ||||||| || ||||||||||||
Sbjct  231  TGTCATATTCTGGAACTATGCTATTGATGGGCAGCCCAAGGTGGCGAGGGAGAGGATCGA  290

Query  213  GGCAGTGGATCAGGAGAAGAATCTGATAGCGTTCAGGGTAGTAGATGGAGATATGTTGAA  272
            ||||||||||||||||||||||||| ||| | |||||||| ||||||||||| ||  |||
Sbjct  291  GGCAGTGGATCAGGAGAAGAATCTGTTAGTGCTCAGGGTAATAGATGGAGATCTGACGAA  350

Query  273  CGGGTTCAAGAGCTTCTTGATTACTGTCCAGGCAACCCCAAAGCTAAGAGGATCAGGAAG  332
             | |||||||||||||||| | ||| |||||||||||||||||||||||||| | |||||
Sbjct  351  AGAGTTCAAGAGCTTCTTGGTCACTATCCAGGCAACCCCAAAGCTAAGAGGACCGGGAAG  410

Query  333  TGTGGTTAAGTGTCACTTCAAATATGAGAGGATTGACGAGGAGGTGGCTCATCCGGAGAA  392
            |||||||||||||||||| ||||||||||||||||||||| ||||||||| |||||||||
Sbjct  411  TGTGGTTAAGTGTCACTTAAAATATGAGAGGATTGACGAGAAGGTGGCTCCTCCGGAGAA  470

Query  393  GCTGCTCGCCTTGTTTGTCAAGAC-AGCCAAAGACA-TGGACGAAATGCTTTTGTCCGAA  450
            ||||||||  ||||||| |||| | | || ||  || |||||||||||||||||||||||
Sbjct  471  GCTGCTCGAGTTGTTTGCCAAG-CTAACCGAAT-CAATGGACGAAATGCTTTTGTCCGAA  528

Query  451  GTCTAG  456
            ||||||
Sbjct  529  GTCTAG  534



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21715667568


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5