BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg335577
Length=1164
Score E
Sequences producing significant alignments: (Bits) Value
AT1G23320.1 | Symbols: TAR1 | tryptophan aminotransferase relat... 1807 0.0
AT1G70560.1 | Symbols: WEI8, TAA1, SAV3 | tryptophan aminotrans... 575 3e-163
> AT1G23320.1 | Symbols: TAR1 | tryptophan aminotransferase related
1 | chr1:8273423-8275350 REVERSE LENGTH=1167
Length=1167
Score = 1807 bits (978), Expect = 0.0
Identities = 1105/1167 (95%), Gaps = 6/1167 (1%)
Strand=Plus/Plus
Query 1 ATGATTGGGTGTGAAAATTCGAAGAAATCATACAGTGATTCGAAC-AAGGAGAAGTGCTT 59
||| ||||||||||||| |||||||||||| |||||| ||||||| || || ||| ||||
Sbjct 4 ATGGTTGGGTGTGAAAACTCGAAGAAATCAGACAGTGGTTCGAACGAA-GACAAGAGCTT 62
Query 60 GTCGGATGACGTCATCAATCTTGATCAAGGAGATCCGACGGCGTTTCAAGAGTATTGGAT 119
||| |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 63 GTCCGATGACATCATCAATCTTGATCAAGGAGATCCTACGGCGTTTCAAGAGTATTGGAT 122
Query 120 GAAGAAGAAGGATAGGTGTACGGTGGTGATACCAGCATGGGATCTGATGAGTTACTTCAG 179
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 123 GAAGAAAAAGGACAGGTGTACGGTGGTGATACCAGCATGGGATCTGATGAGTTACTTCAG 182
Query 180 CGATAC-AACGAACGTGTGTTGGTTCCTAGAGCCAGAGCTTGAGAAGGCGATCAAGGCGT 238
||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 183 CGACACGAA-GAACGTGTGTTGGTTCCTAGAGCCAGAGCTTGAGAAGGCGATCAAGGCGT 241
Query 239 TGCATGGTGCAATCGGTAATGCAGCTACCGAGGAACGCTACATCGTGGTGGGGACTGGCT 298
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 242 TGCATGGTGCAATCGGTAACGCAGCGACCGAGGAACGCTACATCGTGGTGGGGACTGGCT 301
Query 299 CGTCACAGCTTTGTCAGGCCGCTTTGTTTGCTCTTTCGTCGCTCTCTAAGGTCAAACCTG 358
| ||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||
Sbjct 302 CTTCACAGCTTTGTCAGGCCGCTTTGTTTGCACTTTCATCGCTCTCTGAGGTCAAACCTG 361
Query 359 TCAGCATCGTCGTAGCGGTTCCTTATTACTCCACATACGTGGAGGAGGCATCGTATGTTC 418
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 362 TCAGCATCGTCGCAGCGGTTCCTTATTACTCCACATACGTGGAGGAGGCATCGTATCTTC 421
Query 419 AATCGTCGCTATACAAATGGGAAGGAGACGCAAGGACGTTTGACAACAAA-GGACCGTAT 477
||||| |||||||||||||||||||||||||||||||||| ||||| ||| ||||||||
Sbjct 422 AATCGACGCTATACAAATGGGAAGGAGACGCAAGGACGTTCGACAA-AAAGGGACCGTAC 480
Query 478 ATAGAGTTGGTGACGTCACCGAACAACCCTGATGGGACCATGAGAGAGCCGGTGGTGAAC 537
|| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 481 ATCGAGTTGGTGACGTCACCGAACAACCCTGATGGGATCATGAGAGAGCCGGTGGTGAAT 540
Query 538 CGTAGGGAGGATGGGAAAGTGATCCACGACTTCGCGTATTACTGGCCACACTACACTCCC 597
|||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 541 CGTAGGGAGGGTGGGAAAGTGATCCACGACTTGGCGTATTACTGGCCACACTACACTCCC 600
Query 598 ATCACTCGCCGTCAAGACCATGACCTTATGCTCTTCACCTTCTCCAAAATCACTGGCCAC 657
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 601 ATCACTCGCCGTCAAGACCATGACCTTATGCTCTTCACCTTCTCCAAAATCACCGGCCAC 660
Query 658 GCTGGGTCACGCATTGGGTGGGCGTTAGTGAAGGACATAGAGGTTGCTAAGAAGATGGTG 717
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 661 GCTGGGTCACGCATTGGGTGGGCGTTAGTGAAGGACATAGAGGTGGCTAAGAAGATGGTG 720
Query 718 CACTACTTAACAATAAACTCCATTGGTGTGTCGAAGGAGTCACAAACTCGAGCCACTACA 777
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 721 CACTACTTAACAATAAACTCCATTGGTGTGTCGAAGGAGTCACAAACTCGAGCCACCACA 780
Query 778 ATTCTCAACGAACTGACCAAAACCTGTCGGACTCAATCGGAGAGCTTCTTCGAGTATGGC 837
||||| ||||||||||| ||||| ||| |||| |||||||||||||||||||||||||||
Sbjct 781 ATTCTAAACGAACTGACAAAAACATGTAGGACACAATCGGAGAGCTTCTTCGAGTATGGC 840
Query 838 TACGAGAAGATGAAGTCACGGTGGGAGAGGCTACGAGAGGTCGTTGAATCCGGTGACGCA 897
||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||
Sbjct 841 TACGAGAAGATGAAGTCACGGTGGGAGAGGCTACGTGAGGTAGTCGAATCCGGTGACGCA 900
Query 898 TTCACTCTCCCTAATTACCCTCAAGCCTTCTGCAACTTCTTTGGCAAAACCATCTCCACT 957
||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 901 TTCACTCTCCCTAATTACCCTCAAGACTTCTGCAACTTCTTTGGCAAAACCCTCTCCACT 960
Query 958 TCTCCTGCGTTTGCCTGGTTGGGGTATAAAGAGGAAAGAGATCTTGGAAGTCTCTTGAAG 1017
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 961 TCTCCTGCGTTTGCGTGGTTGGGGTATAAAGAGGAAAGAGATCTCGGAAGTCTCTTGAAG 1020
Query 1018 GAGAAGAAGGTTTTGACGAGAGGAGGGGACCGATGTGGTTGTGATAGGAAGTACGTCCGT 1077
|||||||||||||||||||||||||| ||||||||||||||| | | || ||||||||||
Sbjct 1021 GAGAAGAAGGTTTTGACGAGAGGAGGAGACCGATGTGGTTGTAACAAGAGGTACGTCCGT 1080
Query 1078 GTCAGCATGCTTAGCCGCGACGACGACTTTGACGTCTTTATCCACAGACTCGCCACCATC 1137
||||||||||||||||||||||| ||||||||||||| | |||| |||||||| ||||||
Sbjct 1081 GTCAGCATGCTTAGCCGCGACGATGACTTTGACGTCTCTCTCCAAAGACTCGCTACCATC 1140
Query 1138 AAGGATCTCAAATGCAACCAGCCTTGA 1164
||||||||||||||| | ||||||||
Sbjct 1141 AAGGATCTCAAATGCGTCGAGCCTTGA 1167
> AT1G70560.1 | Symbols: WEI8, TAA1, SAV3 | tryptophan aminotransferase
of Arabidopsis 1 | chr1:26604855-26607503 FORWARD LENGTH=1399
Length=1399
Score = 575 bits (311), Expect = 3e-163
Identities = 855/1109 (77%), Gaps = 72/1109 (6%)
Strand=Plus/Plus
Query 74 TCAATCTTGATCAAGGAGATCCGACGGCGTTTC-AAGAGTATTGGATGAAGAAGAAG-GA 131
||||||| ||||| || ||||| |||||| | | |||| || |||| ||||| | | ||
Sbjct 113 TCAATCTGGATCATGGTGATCCAACGGCG-TACGAAGAATACTGGAGGAAGATG-GGTGA 170
Query 132 TAGGTGTACGGTGGTGATACCAGCATGGGATCTGATGAGTTACTTCAGCGATACAACGAA 191
|||||||||||| ||||| | || ||||| ||||||||||||||||| | |||||
Sbjct 171 CAGGTGTACGGTGACGATACGTGGTTGTGATCTCATGAGTTACTTCAGCGACATGACGAA 230
Query 192 CGTGTGTTGGTTCCTAGAGCCAGAGCTTG-AGAAGGCGATCAAGG-CGTTGCATGGTGCA 249
| ||||||||||||| ||||||||||||| || | |||||||||| | ||||| ||||
Sbjct 231 CTTGTGTTGGTTCCTTGAGCCAGAGCTTGAAG-ATGCGATCAAGGAC-TTGCACGGTGTT 288
Query 250 ATCGGTAATGCAGCTACCGAGGAACGCTACATCGTGGTGGGGACTGGCTCGTCACAGCTT 309
| ||||| || || || ||||| || ||||| ||||| ||||| || ||| | ||||||
Sbjct 289 GTTGGTAACGCTGCGACGGAGGATCGGTACATAGTGGTTGGGACCGGTTCGACGCAGCTT 348
Query 310 TGTCAGGCCGCTTTGTTTGCTCTTTCGTCGCTCTCTAAG-GTCAAACCTGTCAGCATCGT 368
||||| ||||| | || || || || || | | | ||| ||||||||||| ||||
Sbjct 349 TGTCAAGCCGCCGTCCACGCACTCTCTTCACTAGCCAGGAGTC-AACCTGTCAGCGTCGT 407
Query 369 CGTAGCGGTTCCTTATTACTCCACATACGTGGAGGAGGC-ATCGTATGTTCAATCGTCGC 427
|| || | ||||| |||||||||||| ||||||||| | | | ||||||| ||| |
Sbjct 408 CGCCGCCGCTCCTTTTTACTCCACATATGTGGAGGAGACGA-CATATGTTCGGTCG--GG 464
Query 428 TA--TACAAATGGGAAGGAGACGCAAGGACGTTT-GACAACAAA-GGACCGTATATAGAG 483
|| ||||| ||||||||||||||| || |||| ||||| ||| || ||||| || |||
Sbjct 465 TATGTACAAGTGGGAAGGAGACGCATGG-GGTTTCGACAA-AAAGGGTCCGTACATCGAG 522
Query 484 TTGGTGACGTCACCGAACAACCCTGATGGGACCATGAGAGAGCCGGTGGTGAACCGT--A 541
| ||||||||||| || |||||||| || ||||| |||||| |||||||||||||| |
Sbjct 523 CTAGTGACGTCACCTAATAACCCTGACGGAACCATCAGAGAGACGGTGGTGAACCGTCCA 582
Query 542 G--G--GAGGATGGGAAAGTGATCCACGACTTCGCGTATTACTGGCCACACTACACTCCC 597
| | || || | ||||||||||| ||||| || ||||||||||| ||||||||||||
Sbjct 583 GACGACGACGAAGCCAAAGTGATCCATGACTTTGCTTATTACTGGCCCCACTACACTCCC 642
Query 598 ATCACTCGCCGTCAAGACCATGACCTTATGCTCTTCACCTTCTCCAAAATCACTGGCCAC 657
|||||||||||||||||||||||| | ||||||||||| |||||||| ||||| ||||||
Sbjct 643 ATCACTCGCCGTCAAGACCATGACATCATGCTCTTCACTTTCTCCAAGATCACAGGCCAC 702
Query 658 GCTGGGTCACGCATTGGGTGGGCGTTAGTGAAGGACATAG-AGGTTGCTAAGAAGATGGT 716
|||||||| || ||||||||||| || |||||||||| || |||| ||||||||||||||
Sbjct 703 GCTGGGTCCCGTATTGGGTGGGCATTGGTGAAGGACA-AGGAGGTAGCTAAGAAGATGGT 761
Query 717 -GCACTAC-TTAACAATAAACTCCATTGGTGTGTCGAAGGAGTCACAAACTCGAGCCA-C 773
| | || ||| | ||||| ||||||||||| ||||||||||| |||| | | |
Sbjct 762 TG-AGTATATTATTG-TGAACTCGATTGGTGTGTCTAAGGAGTCACAGGTTCGAAC-AGC 818
Query 774 TACA-ATTCTCAACGAACTGACCAAAACCTGTCGGA-C---TCA-A-TCGGAGAGCTTCT 826
|| | || ||||||| || | | || ||| || | || | || |||| ||||
Sbjct 819 TA-AGATACTCAACGTTCTAAAGGAGACTTGTAAGAGCGAGTCCGAGTCTGAGAATTTCT 877
Query 827 TCGAGTATGGCTACGAGA-A-GATGAAGTCA-CGGTGGGAGAGGCTACGAGAGGTCGTTG 883
|| ||||||| | || || | ||||||| | |||||||||| |||||| || || || |
Sbjct 878 TCAAGTATGG-T-CGTGAGATGATGAAGA-ATCGGTGGGAGAAGCTACGTGAAGTTGT-G 933
Query 884 AATCCG-GTGACGCATTCACTCT-CCCTAATTACCCTCAAGCCTTCTGCAACTTCTTTGG 941
|| | | || || |||||||| ||| || |||||| |||| || ||||||| ||||||
Sbjct 934 AAAGAGAGCGATGCTTTCACTCTTCCC-AAGTACCCTGAAGCATTTTGCAACTACTTTGG 992
Query 942 CAAAACCATCTCCA--CTT-CTCCTGCGTTTGCCTGGTTGGGGTATAAAGAGGAA-AGA- 996
|||| || ||| | ||| | ||||||||||| ||| | ||| | ||| | || |||
Sbjct 993 -AAAATCA-CTCGAATCTTAC-CCTGCGTTTGCGTGGCTAGGG-ACGAAG-G-AAGAGAC 1046
Query 997 G-ATCTTGG-AAGTCTCTTGAAGGAGA-AGAAGGTTTTGA-CGAGAGGAGGGGACCGATG 1052
| |||| || |||| |||| ||||| | ||||| ||| | |||| || || || ||
Sbjct 1047 GGATCT-GGTAAGTGAATTGA-GGAGACACAAGGTAATGAGC-AGAGCTGGAGAGCGTTG 1103
Query 1053 TGGTTGTGATAGGAAGTACGTCCGTGTCAGCATGCTTAGCCGCGACGACGACTTTGAC-G 1111
||| | ||| | |||| | ||||| |||||||||||||| || || |||| ||| | |
Sbjct 1104 TGGATCTGACAAGAAGCATGTCCGAGTCAGCATGCTTAGTCGTGAAGACGT-TTTCAATG 1162
Query 1112 TCTTTATCCACAGACTCGCCACCATCAAG 1140
||||| || | |||||||||| ||| |||
Sbjct 1163 TCTTTCTCGAGAGACTCGCCAACATGAAG 1191
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57128220210
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5