BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg335585 Length=1698 Score E Sequences producing significant alignments: (Bits) Value AT1G23400.1 | Symbols: CAF2, ATCAF2 | RNA-binding CRS1 / YhbY (... 2601 0.0 > AT1G23400.1 | Symbols: CAF2, ATCAF2 | RNA-binding CRS1 / YhbY (CRM) domain-containing protein | chr1:8312076-8314744 REVERSE LENGTH=1822 Length=1822 Score = 2601 bits (1408), Expect = 0.0 Identities = 1605/1701 (94%), Gaps = 9/1701 (1%) Strand=Plus/Plus Query 1 ATGGCGATTGTAGCATCACTACGAGACATTAATCTCTTCTCTTCACTCCCTTCAACACCT 60 ||||||||||||||||||||| |||| |||||||||||||||||||| |||||||| ||| Sbjct 5 ATGGCGATTGTAGCATCACTAAGAGATATTAATCTCTTCTCTTCACTTCCTTCAACGCCT 64 Query 61 CCAATGGCGGATTCATCATCAGGAACTTTCCGGCCAGCTCCGCCGATACCGATTCCGAAA 120 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| Sbjct 65 CCAATGGCGGATTCATCATCAGGAACATTCCGGCCAGCTCCGCCGATACCGATTCCCAAA 124 Query 121 TACTCACCATCTAATAGAAATCGTAATCGGAAAACTAATCATCAAATTCAAACCGATACA 180 ||| ||||||| |||||||||||||||| ||||||| | ||| | ||||||||||||| Sbjct 125 TACGCACCATCCAATAGAAATCGTAATCAGAAAACT-A--ATC--A-TCAAACCGATACA 178 Query 181 CAGCCGAAGAAACCACAATCAAATCCGGCTCTCAAGCTTCCGCATCACCGAACCAGATAC 240 | ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| Sbjct 179 AACCCGAAGAAACCACAATCAAATCCAGCTCTTAAGCTTCCGCATCACCGAACCAGATAC 238 Query 241 TACAAACCGGTTAAGGAAGGAGTTATCTCTTCAGACGGCGACCGCACAATCGTAATTGGC 300 ||||||||||||||||||||||||||||| |||||||| |||||||||||| |||| ||| Sbjct 239 TACAAACCGGTTAAGGAAGGAGTTATCTCCTCAGACGGTGACCGCACAATCTTAATCGGC 298 Query 301 GAATCCGGTGTCTCGTATCAGCTTCCCGGCGCGCCGTTCGAGTTTCAGTTCAGTTACTCT 360 || ||||| |||||||||||||||||||| || |||||||||||||| ||||| || ||| Sbjct 299 GATTCCGGCGTCTCGTATCAGCTTCCCGGTGCACCGTTCGAGTTTCAATTCAGCTATTCT 358 Query 361 GAGACACCGAAAGCTAAACCGGTTGGGATTCGTGAACCGGCGTTTATGCCGTTTGCGCCA 420 ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||| Sbjct 359 GAGACACCGAAAGTTAAACCGGTTGGGATTCGTGAACCGGCTTTTATGCCGTTTGCTCCA 418 Query 421 CCGACGATGCCGAGACCGTGGACTGGGAAAGCACCGTTGAAGAAATCAAAGAAGAAGATT 480 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 419 CCGACGATGCCGAGACCGTGGACTGGGAAAGCACCGTTGAAGAAATCGAAGAAGAAGATT 478 Query 481 CCGTTGTTTGATTCATTCAATCCACCACCGGCGGGAAAATCTGGAGTTAAGTATGTAGAA 540 || ||||||||||| || |||||||| ||||||||||||||||||||||||||||||||| Sbjct 479 CCATTGTTTGATTCTTTTAATCCACCGCCGGCGGGAAAATCTGGAGTTAAGTATGTAGAA 538 Query 541 ATGCCTGGGCCGTTGCCGTTTGGGAGGTATCCAAAGGAAGGAATGAATAGAGAAGAGATT 600 |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || Sbjct 539 ATGCCTGGGCCGTTACCGTTTGGGAGGTATCCAAAGGAAGGAATGAATAGAGAAGAGGTT 598 Query 601 TTAGGAGAGCCATTGAAGAAATGGGAGAAAGGAATGTTGATTAAGCCTCATATGCATGAT 660 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 599 TTAGGAGAGCCATTGAAGAGATGGGAGAAAGGAATGTTGATTAAGCCTCATATGCATGAT 658 Query 661 AATCGTCAGGTTAATTTGGGAAGAGATGGATTTACACATAATATGTTGGAATTGATACAT 720 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 659 AATCGTCAGGTTAATTTGGGTAGAGATGGATTTACACATAATATGTTGGAATTGATACAT 718 Query 721 TCGCATTGGAAGAGACGACGTATTTGTAAAGTTCGATGTAAAGGAGTTCCTACTGTGGAT 780 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 719 TCGCATTGGAAGAGACGACGTGTTTGTAAAGTTCGATGTAAAGGAGTTCCTACTGTGGAT 778 Query 781 ATGGATAACGTGTGTCGTGTTCTTGAGGAAAAGACAGGAGGAGAGATTATTCACAGAGTT 840 ||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| Sbjct 779 ATGAATAACGTGTGTCGTGTTCTTGAGGAAAAGACAGGAGGAGAGATCATTCATAGAGTT 838 Query 841 GGAGGTGTGGTGTACCTCTTCAGGGGTAGAAATTACAATTATCGCACACGTCCGCAATAC 900 ||||||||||||||||| ||||||||||| ||||||||||| || ||||||||||| ||| Sbjct 839 GGAGGTGTGGTGTACCTTTTCAGGGGTAGGAATTACAATTACCGTACACGTCCGCAGTAC 898 Query 901 CCGTTGATGTTGTGGAAGCCAGCAGCTCCTGTTTATCCAAAGCTCATTCAAGAAGTTCCT 960 || |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| Sbjct 899 CCATTGATGTTGTGGAAACCAGCAGCTCCTGTTTATCCAAAGCTTATTCAAGAAGTTCCT 958 Query 961 GAAGGATTGACGAAAGAGGAAGCTCATGAGTTCAGGGTGAAGGGCAAGTCTCTTAGACCC 1020 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || Sbjct 959 GAAGGATTGACGAAAGAGGAAGCTCATGAGTTCAGGGTGAAGGGAAAGTCTCTTAGGCCT 1018 Query 1021 ATTTGCAAGTTGTCTAAAAATGGGGTCTACGTGTCACTAGTCAAGGATGTTAGGGATGCC 1080 || |||||||||||||||||||| || |||||||| |||||||| ||||| ||||||||| Sbjct 1019 ATATGCAAGTTGTCTAAAAATGGAGTTTACGTGTCGCTAGTCAAAGATGTGAGGGATGCC 1078 Query 1081 TTTGAACTGAGTCCCTTGGTGAAAGTCGACTGCCCAGGACTTGAACCAAGTGATTATAAG 1140 |||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1079 TTTGAACTGAGTTCATTGGTGAAAGTCGACTGCCCAGGGCTTGAACCAAGTGATTATAAG 1138 Query 1141 AAAATAGGCGCTAAACTTAAGGAGTTAGTTCCATGTGTGCTTCTGTCTTTCGATGATGAG 1200 ||||| |||||||| || |||||||||||||| ||||||||||||||||||||||||||| Sbjct 1139 AAAATTGGCGCTAAGCTCAAGGAGTTAGTTCCTTGTGTGCTTCTGTCTTTCGATGATGAG 1198 Query 1201 CAAATACTCATGTGGAGGGGACGAGATTGGAAGTCGCGGTTTGTAGACAATCCTTTAATT 1260 ||||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||| Sbjct 1199 CAAATACTCATGTGGAGAGGACGAGAATGGAAGTCGCGGTTTGTAGACAATCCTCTAATT 1258 Query 1261 CCAAGCCTTTCTGAAACCAACATAGCGAACGAACTTGATCCCTCAGACAAACCCAGTGAC 1320 |||||||||||||| ||||||| | |||||||||||||||||||||||||||| ||||| Sbjct 1259 CCAAGCCTTTCTGAGACCAACACAACGAACGAACTTGATCCCTCAGACAAACCTAGTGAA 1318 Query 1321 GAACAAACTGTGTCTGATCCAAGTTCAACGATCTCAAGCCCCAAAATGATCTCGCTCTGG 1380 |||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1319 GAACAAACTGTGGCTAATCCAAGTACAACGATCTCAAGCCCCAAAATGATCTCGCTCTGG 1378 Query 1381 AAACGAGCATTGGAATCGTCCAAGGCGGTGATTCTTGAAGAGCTTGACCTTGGTCCGGAC 1440 ||||||| ||||||||||| ||||| ||||||||||||||||||||||| ||||| ||| Sbjct 1379 CAACGAGCGTTGGAATCGTCGAAGGCTGTGATTCTTGAAGAGCTTGACCTCGGTCCAGAC 1438 Query 1441 GATCTATTGAAGAAGGTGGAAGAGTTAGAAGGCACTTCACTGGCTGCAGAACACACTTAC 1500 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1439 GATCTATTGAAGAAGGTGGAAGAGTTAGAAGGCACTTCACTGGCTGCAGAACACACTTAC 1498 Query 1501 ACAGCTATGGTCTTGTCGAATACTGATGGTGCAGCAGAGGATTACGTGGATGACAAGGAC 1560 ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| Sbjct 1499 ACAGCTATGGTCTTGTCAAATACTGATGGTGCAGCAGAGGATTACGTGGATGAAAAGGAC 1558 Query 1561 CGGTCCGAAGAGTAT-A--GTGACATAGACGATGACTTTGATGACGAGTGTTCCGATGAT 1617 ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| Sbjct 1559 CGGTCCGAAGAGTATTATAGTGACATAGACGATGACTTTGATGACGAGTGTTCCGATGAT 1618 Query 1618 GAGTCGCTAGATCCGGTTGGTCCAGTGGGAACTTTGCCCGTTGACAAGATAGTTAGGAAG 1677 |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| Sbjct 1619 GAGTCGCTAGATCCGGTTGGTCCAGTGGGATCTTTACCCGTTGACAAGATAGTTAGGAAG 1678 Query 1678 CTGAGGGAGAGACTAAAATAG 1698 ||||||| |||||||||||| Sbjct 1679 TTGAGGGAAAGACTAAAATAG 1699 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 83935311240 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5