BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg335585
Length=1698
Score E
Sequences producing significant alignments: (Bits) Value
AT1G23400.1 | Symbols: CAF2, ATCAF2 | RNA-binding CRS1 / YhbY (... 2601 0.0
> AT1G23400.1 | Symbols: CAF2, ATCAF2 | RNA-binding CRS1 / YhbY
(CRM) domain-containing protein | chr1:8312076-8314744 REVERSE
LENGTH=1822
Length=1822
Score = 2601 bits (1408), Expect = 0.0
Identities = 1605/1701 (94%), Gaps = 9/1701 (1%)
Strand=Plus/Plus
Query 1 ATGGCGATTGTAGCATCACTACGAGACATTAATCTCTTCTCTTCACTCCCTTCAACACCT 60
||||||||||||||||||||| |||| |||||||||||||||||||| |||||||| |||
Sbjct 5 ATGGCGATTGTAGCATCACTAAGAGATATTAATCTCTTCTCTTCACTTCCTTCAACGCCT 64
Query 61 CCAATGGCGGATTCATCATCAGGAACTTTCCGGCCAGCTCCGCCGATACCGATTCCGAAA 120
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 65 CCAATGGCGGATTCATCATCAGGAACATTCCGGCCAGCTCCGCCGATACCGATTCCCAAA 124
Query 121 TACTCACCATCTAATAGAAATCGTAATCGGAAAACTAATCATCAAATTCAAACCGATACA 180
||| ||||||| |||||||||||||||| ||||||| | ||| | |||||||||||||
Sbjct 125 TACGCACCATCCAATAGAAATCGTAATCAGAAAACT-A--ATC--A-TCAAACCGATACA 178
Query 181 CAGCCGAAGAAACCACAATCAAATCCGGCTCTCAAGCTTCCGCATCACCGAACCAGATAC 240
| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 179 AACCCGAAGAAACCACAATCAAATCCAGCTCTTAAGCTTCCGCATCACCGAACCAGATAC 238
Query 241 TACAAACCGGTTAAGGAAGGAGTTATCTCTTCAGACGGCGACCGCACAATCGTAATTGGC 300
||||||||||||||||||||||||||||| |||||||| |||||||||||| |||| |||
Sbjct 239 TACAAACCGGTTAAGGAAGGAGTTATCTCCTCAGACGGTGACCGCACAATCTTAATCGGC 298
Query 301 GAATCCGGTGTCTCGTATCAGCTTCCCGGCGCGCCGTTCGAGTTTCAGTTCAGTTACTCT 360
|| ||||| |||||||||||||||||||| || |||||||||||||| ||||| || |||
Sbjct 299 GATTCCGGCGTCTCGTATCAGCTTCCCGGTGCACCGTTCGAGTTTCAATTCAGCTATTCT 358
Query 361 GAGACACCGAAAGCTAAACCGGTTGGGATTCGTGAACCGGCGTTTATGCCGTTTGCGCCA 420
||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 359 GAGACACCGAAAGTTAAACCGGTTGGGATTCGTGAACCGGCTTTTATGCCGTTTGCTCCA 418
Query 421 CCGACGATGCCGAGACCGTGGACTGGGAAAGCACCGTTGAAGAAATCAAAGAAGAAGATT 480
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 419 CCGACGATGCCGAGACCGTGGACTGGGAAAGCACCGTTGAAGAAATCGAAGAAGAAGATT 478
Query 481 CCGTTGTTTGATTCATTCAATCCACCACCGGCGGGAAAATCTGGAGTTAAGTATGTAGAA 540
|| ||||||||||| || |||||||| |||||||||||||||||||||||||||||||||
Sbjct 479 CCATTGTTTGATTCTTTTAATCCACCGCCGGCGGGAAAATCTGGAGTTAAGTATGTAGAA 538
Query 541 ATGCCTGGGCCGTTGCCGTTTGGGAGGTATCCAAAGGAAGGAATGAATAGAGAAGAGATT 600
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 539 ATGCCTGGGCCGTTACCGTTTGGGAGGTATCCAAAGGAAGGAATGAATAGAGAAGAGGTT 598
Query 601 TTAGGAGAGCCATTGAAGAAATGGGAGAAAGGAATGTTGATTAAGCCTCATATGCATGAT 660
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 599 TTAGGAGAGCCATTGAAGAGATGGGAGAAAGGAATGTTGATTAAGCCTCATATGCATGAT 658
Query 661 AATCGTCAGGTTAATTTGGGAAGAGATGGATTTACACATAATATGTTGGAATTGATACAT 720
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 659 AATCGTCAGGTTAATTTGGGTAGAGATGGATTTACACATAATATGTTGGAATTGATACAT 718
Query 721 TCGCATTGGAAGAGACGACGTATTTGTAAAGTTCGATGTAAAGGAGTTCCTACTGTGGAT 780
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 719 TCGCATTGGAAGAGACGACGTGTTTGTAAAGTTCGATGTAAAGGAGTTCCTACTGTGGAT 778
Query 781 ATGGATAACGTGTGTCGTGTTCTTGAGGAAAAGACAGGAGGAGAGATTATTCACAGAGTT 840
||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 779 ATGAATAACGTGTGTCGTGTTCTTGAGGAAAAGACAGGAGGAGAGATCATTCATAGAGTT 838
Query 841 GGAGGTGTGGTGTACCTCTTCAGGGGTAGAAATTACAATTATCGCACACGTCCGCAATAC 900
||||||||||||||||| ||||||||||| ||||||||||| || ||||||||||| |||
Sbjct 839 GGAGGTGTGGTGTACCTTTTCAGGGGTAGGAATTACAATTACCGTACACGTCCGCAGTAC 898
Query 901 CCGTTGATGTTGTGGAAGCCAGCAGCTCCTGTTTATCCAAAGCTCATTCAAGAAGTTCCT 960
|| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 899 CCATTGATGTTGTGGAAACCAGCAGCTCCTGTTTATCCAAAGCTTATTCAAGAAGTTCCT 958
Query 961 GAAGGATTGACGAAAGAGGAAGCTCATGAGTTCAGGGTGAAGGGCAAGTCTCTTAGACCC 1020
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 959 GAAGGATTGACGAAAGAGGAAGCTCATGAGTTCAGGGTGAAGGGAAAGTCTCTTAGGCCT 1018
Query 1021 ATTTGCAAGTTGTCTAAAAATGGGGTCTACGTGTCACTAGTCAAGGATGTTAGGGATGCC 1080
|| |||||||||||||||||||| || |||||||| |||||||| ||||| |||||||||
Sbjct 1019 ATATGCAAGTTGTCTAAAAATGGAGTTTACGTGTCGCTAGTCAAAGATGTGAGGGATGCC 1078
Query 1081 TTTGAACTGAGTCCCTTGGTGAAAGTCGACTGCCCAGGACTTGAACCAAGTGATTATAAG 1140
|||||||||||| | ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1079 TTTGAACTGAGTTCATTGGTGAAAGTCGACTGCCCAGGGCTTGAACCAAGTGATTATAAG 1138
Query 1141 AAAATAGGCGCTAAACTTAAGGAGTTAGTTCCATGTGTGCTTCTGTCTTTCGATGATGAG 1200
||||| |||||||| || |||||||||||||| |||||||||||||||||||||||||||
Sbjct 1139 AAAATTGGCGCTAAGCTCAAGGAGTTAGTTCCTTGTGTGCTTCTGTCTTTCGATGATGAG 1198
Query 1201 CAAATACTCATGTGGAGGGGACGAGATTGGAAGTCGCGGTTTGTAGACAATCCTTTAATT 1260
||||||||||||||||| |||||||| ||||||||||||||||||||||||||| |||||
Sbjct 1199 CAAATACTCATGTGGAGAGGACGAGAATGGAAGTCGCGGTTTGTAGACAATCCTCTAATT 1258
Query 1261 CCAAGCCTTTCTGAAACCAACATAGCGAACGAACTTGATCCCTCAGACAAACCCAGTGAC 1320
|||||||||||||| ||||||| | |||||||||||||||||||||||||||| |||||
Sbjct 1259 CCAAGCCTTTCTGAGACCAACACAACGAACGAACTTGATCCCTCAGACAAACCTAGTGAA 1318
Query 1321 GAACAAACTGTGTCTGATCCAAGTTCAACGATCTCAAGCCCCAAAATGATCTCGCTCTGG 1380
|||||||||||| || |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1319 GAACAAACTGTGGCTAATCCAAGTACAACGATCTCAAGCCCCAAAATGATCTCGCTCTGG 1378
Query 1381 AAACGAGCATTGGAATCGTCCAAGGCGGTGATTCTTGAAGAGCTTGACCTTGGTCCGGAC 1440
||||||| ||||||||||| ||||| ||||||||||||||||||||||| ||||| |||
Sbjct 1379 CAACGAGCGTTGGAATCGTCGAAGGCTGTGATTCTTGAAGAGCTTGACCTCGGTCCAGAC 1438
Query 1441 GATCTATTGAAGAAGGTGGAAGAGTTAGAAGGCACTTCACTGGCTGCAGAACACACTTAC 1500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1439 GATCTATTGAAGAAGGTGGAAGAGTTAGAAGGCACTTCACTGGCTGCAGAACACACTTAC 1498
Query 1501 ACAGCTATGGTCTTGTCGAATACTGATGGTGCAGCAGAGGATTACGTGGATGACAAGGAC 1560
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1499 ACAGCTATGGTCTTGTCAAATACTGATGGTGCAGCAGAGGATTACGTGGATGAAAAGGAC 1558
Query 1561 CGGTCCGAAGAGTAT-A--GTGACATAGACGATGACTTTGATGACGAGTGTTCCGATGAT 1617
||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 1559 CGGTCCGAAGAGTATTATAGTGACATAGACGATGACTTTGATGACGAGTGTTCCGATGAT 1618
Query 1618 GAGTCGCTAGATCCGGTTGGTCCAGTGGGAACTTTGCCCGTTGACAAGATAGTTAGGAAG 1677
|||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 1619 GAGTCGCTAGATCCGGTTGGTCCAGTGGGATCTTTACCCGTTGACAAGATAGTTAGGAAG 1678
Query 1678 CTGAGGGAGAGACTAAAATAG 1698
||||||| ||||||||||||
Sbjct 1679 TTGAGGGAAAGACTAAAATAG 1699
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83935311240
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5