BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg335587
Length=711
Score E
Sequences producing significant alignments: (Bits) Value
AT1G23420.1 | Symbols: INO | Plant-specific transcription facto... 1194 0.0
> AT1G23420.1 | Symbols: INO | Plant-specific transcription factor
YABBY family protein | chr1:8317396-8319483 FORWARD LENGTH=1102
Length=1102
Score = 1194 bits (646), Expect = 0.0
Identities = 689/710 (97%), Gaps = 1/710 (0%)
Strand=Plus/Plus
Query 3 GACAACACTCAACCATCTGCTTGATCTGCCGGGGCAGATTTGCCATGTCCAATGTGGTTT 62
|||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 51 GACAACACTCAACCATCTATTTGATCTGCCGGGGCAGATTTGCCATGTCCAGTGTGGTTT 110
Query 63 TTGCACCACTATTTTACTGGTGAGTGTACCCTTCACAAGCTTGTCAATGGTAGTGACTGT 122
||||||||||||||| |||||||||||||| || ||||||||||||||||| ||||||||
Sbjct 111 TTGCACCACTATTTTGCTGGTGAGTGTACCGTTTACAAGCTTGTCAATGGTGGTGACTGT 170
Query 123 GAGATGTGGGCATTGCACAAGCCTTCTCTCTGTCAATTTGATGAAGGCTTCCTTTATTCC 182
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 171 GAGATGTGGGCATTGCACAAGCCTTCTCTCTGTCAATTTGATGAAGGCTTCCTTCATTCC 230
Query 183 TCTCCATCTCCTTGCTTCTCTGTCCCATCTTGATGAGACGGGGAAAGAGGAGGTTGCAGC 242
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 231 TCTCCATCTCCTTGCTTCTCTCTCCCATCTTGATGAGACCGGGAAAGAGGAGGTTGCAGC 290
Query 243 TACGGATGCTGTGGAAGAAGAAGCATGGAAGGTGAATCAGGAGAAGGAGAACAGTCCAAC 302
||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 291 TACAGATGGTGTGGAAGAAGAAGCATGGAAGGTGAATCAGGAGAAGGAGAACAGTCCAAC 350
Query 303 GACTTTGGTTTCATCTTCAGACAATGAAGATGAAGATGTCTCTCGTGTTTACCAAGTTGT 362
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 351 GACTTTGGTTTCATCTTCAGACAATGAAGATGAAGATGTGTCTCGTGTTTACCAAGTTGT 410
Query 363 CAATAAACCTCCTGAGAAACGACAAAGAGCTCCTTCAGCTTACAATTGCTTCATCAAGGA 422
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 411 CAATAAACCACCTGAGAAGCGACAAAGAGCTCCTTCAGCTTACAATTGCTTCATCAAGGA 470
Query 423 AGAGATCAGGAGGTTAAAGGCTCAGAATCCAAGCATGGCTCACAAGGAAGCTTTCAGCTT 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 471 AGAGATCAGGAGGTTAAAGGCTCAGAATCCAAGCATGGCTCACAAGGAAGCTTTCAGCTT 530
Query 483 AGCTGCCAAAAATTGGGCCCATTTTCCTCCAGTTCACAACAAGAGAGCTGCTTCAGATCA 542
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 531 AGCTGCCAAAAATTGGGCCCATTTTCCTCCAGCTCACAACAAGAGAGCTGCTTCAGATCA 590
Query 543 ATGTTTTTGTGAGGAAGATAACAATGCAATTCTACCATGCAATGCTTTTGAGGACCATGA 602
||||||||||||||||||||||||||| || ||||||||||||| |||||||||||||||
Sbjct 591 ATGTTTTTGTGAGGAAGATAACAATGCGATACTACCATGCAATGTTTTTGAGGACCATGA 650
Query 603 AGAAAGCAATAATGGGTTCCGAGAGAGAAAGGCTCAGAGGCATTCCATTTGGGGAAAATC 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 651 AGAAAGCAATAATGGGTTCCGAGAGAGAAAGGCTCAGAGGCATTCCATTTGGGGAAAATC 710
Query 663 TCCATTTGAGTA-TAACAATTTGGGATATGAAATTTTAACaaaaaaaTAA 711
|||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 711 TCCATTTGAGTAATAACAATTTGGGATATGAAAATTTAACAAAAAAATAA 760
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34460624842
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5