BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg335602
Length=795
Score E
Sequences producing significant alignments: (Bits) Value
AT1G23640.1 | Symbols: | unknown protein; LOCATED IN: chloropl... 1238 0.0
AT1G23660.1 | Symbols: | Domain of unknown function DUF220 | c... 832 0.0
AT2G27670.1 | Symbols: | Domain of unknown function DUF220 | c... 468 4e-131
AT1G23690.1 | Symbols: | Domain of unknown function DUF220 | c... 462 2e-129
AT1G23600.1 | Symbols: | Domain of unknown function DUF220 | c... 335 4e-91
AT1G23620.1 | Symbols: | pseudogene, hypothetical protein | ch... 80.5 2e-14
> AT1G23640.1 | Symbols: | unknown protein; LOCATED IN: chloroplast;
EXPRESSED IN: petal, leaf whorl, sepal, flower; EXPRESSED
DURING: 4 anthesis, petal differentiation and expansion
stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function
DUF220 (InterPro:IPR003863); BEST Arabidopsis thaliana protein
match is: Domain of unknown function DUF220 (TAIR:AT1G23660.1);
Has 270 Blast hits to 130 proteins in 12 species:
Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants -
270; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
| chr1:8367170-8370280 REVERSE LENGTH=1275
Length=1275
Score = 1238 bits (670), Expect = 0.0
Identities = 744/780 (95%), Gaps = 4/780 (1%)
Strand=Plus/Plus
Query 18 ATTTAGTGGATCGATCAATCCTCATGTTGAAGAGCCGCATGAGGTCGAGTCCAAGAACCC 77
||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 498 ATTTAGTGGGTCGATCAATCCTCATGTTGAAGAGCCTCATGAGGTCGAGTCCAAGAGCCC 557
Query 78 CGCATCTAATTCTGTGTGGGCGGTAGACCCTAAATATTATGACTTAGCTGAGGTAAAGAA 137
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 558 TGCATCTAATTCTGTGTGGGCGGTAGATCCTAAATATTATGACTTAGCTGAGGTAAAGAA 617
Query 138 GGAATCAAAACTTTGGAGAGCTGCAGAGAAGAAGCATCCATGGTATGATGCACCAGCTAA 197
|||||||| ||||||||||||||| ||||| || ||||||||||||||||| ||||||||
Sbjct 618 GGAATCAAGACTTTGGAGAGCTGCTGAGAAAAAACATCCATGGTATGATGCTCCAGCTAA 677
Query 198 GGTGAAGGTGACAACaaaaaaaG-GTCTTTGCCATTTGAACATAGAATTCAAATTGGGAT 256
||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 678 GGTGAAGGTGACAAC-AAAAAAGTGTCTTTGCCATTTGAACATAGAATTCAAATTGGGAT 736
Query 257 TGCCTCCTGAAGCAGTCTACGAGATGTTCACTAATCCAAACAACTTTCCTTTCTTCAAAG 316
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 737 TGCCTCCTGAAGCAGTCTATGAGATGTTCACTAATCCAAACAACTTTCCTTTCTTCAAAG 796
Query 317 AGGACAAGGACGGGCGCCAACGTTTGGAAAACAAATCAACAAAGGTTTTGAAGAAGGATG 376
|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 797 AGGATAAGGCCGGGCGCCAACGTTTGGAAAACAAATCAACAAAGGTTTTGAAGAAGGATG 856
Query 377 GACCGAGGCAGACCACAGAGGTGGAAAAAGCTTTGTCCTGGAACTTTCTTGGGTGTTCTG 436
|||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 857 GACCAAGGCAGACCACGGAGGTGGAAAAAGCTTTGTCCTGGAACTTTCTTGGGTGTTCAG 916
Query 437 GAGATATCCCAATACATCTTATAATCCACGAAAACCATAAGAATCTAACTGCAAAATATA 496
|||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 917 TAGATATCCCAATACATCTTATAATTCACGAAAACCATAAGAATCTAACAGCAAAATATA 976
Query 497 CGACAAAGAAAATGATTTTAATGAAAGTGTTCGAGGGTAGCTGGAAAGTTGAGCCAGACT 556
|||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 977 CGACAAAGAAAATGATGTTAATGAAAGTGTTCAAGGGTAGCTGGAAAGTTGAGCCAGATT 1036
Query 557 ACGTAGATCAGGAACGCTTGTGCAAGCCAAGGTTGCCAAAAAGTCGAAAAGAATACAAAA 616
|||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||
Sbjct 1037 ACGTAGATCAGGAACGCTTGTGCAAGTCAAGGTCGCCAAAAAGTCGAGAAGAATACAAAA 1096
Query 617 TATGTAGCGGTGGACAAGGAAAAGTTGGGTCGAAAGTTTCAATGGAGCAGATTTTTCAGC 676
||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||
Sbjct 1097 TATGTAGCGGTGGACAAGGAAAAGTTGGGTCAAAAGTTACAATGGAGCAGATTTTTGAGC 1156
Query 677 CTTCTTCTCTTCTTAATCTACCACCGGTTTCATGGATCATTTGTGGGATCACCATCAGAA 736
|||||||||||||||||| |||||||||||| ||||||||| ||||||||||||||||||
Sbjct 1157 CTTCTTCTCTTCTTAATCGACCACCGGTTTCTTGGATCATTCGTGGGATCACCATCAGAA 1216
Query 737 CCACCAAGATTCTGCTCGAAGATCTTAGAAAAGCGGGTACCTCTTTACG-GAAAGTTTGA 795
||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||
Sbjct 1217 CCACCAAGATTCTGCTCGAAGATCTTAGAAAAGCGGGTACCACTTTACGAGAA-GTTTGA 1275
Score = 134 bits (72), Expect = 2e-30
Identities = 180/230 (78%), Gaps = 15/230 (7%)
Strand=Plus/Plus
Query 348 CAAATCAACAAAGGTTTTGAAGAAGGATGGACCGAGGCAGACCACAGAGGTGGAA-AAAG 406
|||||||| |||||||||||||||||||||||||||||||| ||| | ||| ||||
Sbjct 234 CAAATCAAGAAAGGTTTTGAAGAAGGATGGACCGAGGCAGATTGT-GAGATTGAAGAAAG 292
Query 407 CTTTGTCCTGGAACTTTCT-TGGGTGTTCTGGAGA-TATCCCAATACATCTTATAATCCA 464
|| || | ||| ||||||| ||| || |||||||| | ||| | || |||| || || |
Sbjct 293 CTGTGGCATGGGACTTTCTATGG-TGGTCTGGAGAATTTCCGA-TAAATCTAATTGTCGA 350
Query 465 CGAAAACCATAA-GAATCTAACTGCAAAATATACGACAA-AGAAAATGATTTTAATGAAA 522
| |||| | || || ||| || |||||||||| | || |||||||||| || ||||||
Sbjct 351 TGTAAACAAAAAAGA-TCTTACAGCAAAATATAAAA-AAGAGAAAATGATGTTCATGAAA 408
Query 523 GTGTTCGAGGGTAGCTGGAAAGTT-GAGCCAG-ACTACGTAGAT-CAGGA 569
|| ||||| |||| |||||| | | |||||| | || |||||| |||||
Sbjct 409 GTTTTCGAAGGTAACTGGAA-GATAGAGCCACTA-TATGTAGATTCAGGA 456
Score = 89.8 bits (48), Expect = 4e-17
Identities = 56/60 (93%), Gaps = 0/60 (0%)
Strand=Plus/Plus
Query 146 AACTTTGGAGAGCTGCAGAGAAGAAGCATCCATGGTATGATGCACCAGCTAAGGTGAAGG 205
|||| |||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 170 AACTATGGAAAGCTGCAGAGAAGAAGCATCCATGGTATGATGCACCTCCTAAGGTGAAGG 229
> AT1G23660.1 | Symbols: | Domain of unknown function DUF220 |
chr1:8371609-8372845 REVERSE LENGTH=868
Length=868
Score = 832 bits (450), Expect = 0.0
Identities = 690/805 (86%), Gaps = 20/805 (2%)
Strand=Plus/Plus
Query 1 ATGAGTGTAATTCCTAGATTTAGTGGATCGATCAATCCTCATGTTGAAGAGCCGCATGAG 60
|||||||| ||||| ||||| || | | |||||||| ||||||||||||| | ||||
Sbjct 74 ATGAGTGTGCTTCCTGGATTTGGTAGCTGGATCAATCAGAATGTTGAAGAGCCTCCTGAG 133
Query 61 GTCGAGTCCAAGAA-CCCCGCATCT-AATTCTGTGTGGGCGGTAGACCCTAAATATTATG 118
| ||||||||| || ||| |||| || |||||||||||||||| |||||||||| |
Sbjct 134 GCCGAGTCCAA-AAGCCCTAAATCTGAA-GCTGTGTGGGCGGTAGATACTAAATATTACG 191
Query 119 ACTTAGCTGAGGTAAAGAAG-GAATCA-AAACTTTGGAGAGCTGCAGA-GAAGAAGCATC 175
|||||| ||| || || || ||| | ||| |||||||||||||||| ||| |||||||
Sbjct 192 ACTTAGATGAAGT-GAGGAGAGAAGGAGAAA-TTTGGAGAGCTGCAGAGGAA-AAGCATC 248
Query 176 CATGGTATGATGCACCAGCTAAGGTGAAGGTGACAACaaaaaaaGGTCTTTGCCATTTGA 235
||||||||||||| || |||||||||||||||||||||||||| |||||||||||| |||
Sbjct 249 CATGGTATGATGCTCCTGCTAAGGTGAAGGTGACAACAAAAAATGGTCTTTGCCATATGA 308
Query 236 ACATAGAATTCAAATTGGGATTGCCTCCTGAAGCAGTCTACGAGATGTTCACTAATCCAA 295
|||||||||| ||| ||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct 309 ACATAGAATTTAAACTGGGATTACCTCCTGAAGGAGTCTACGAGATGTTCACTAATCCAA 368
Query 296 ACAACTTTCCTTTCTTCAAAGAGGACAAGGACGGGCGCCAACGTTTGGAAAACAAATCAA 355
|||||| ||| |||||||| ||||||||| ||||||||||||| |||||||||||||||
Sbjct 369 ACAACTATCCAGTCTTCAAAAAGGACAAGGCCGGGCGCCAACGTCTGGAAAACAAATCAA 428
Query 356 CAAAGGTTTTGAAGAAGGATGGACCGAGGCAGACCACAGAGGTGGAAAAAGCTTTGTCCT 415
||| ||||||||||| ||||||||||||||||||| ||| ||||||||| ||||| ||
Sbjct 429 GAAAAGTTTTGAAGAAAAATGGACCGAGGCAGACCACGGAGATGGAAAAAGATTTGTACT 488
Query 416 GGAACTTTCTTGGG-TGTTCTGGAG-ATATCCCAATACATCTTA-TAATCCACGAAAACC 472
||||||| ||| | | | | || | ||||| |||||||| | | ||| | ||||| |
Sbjct 489 GGAACTTCCTTTTCATATCCAG-AGCA-ATCCCGATACATCT-AGTTATCGATGAAAATC 545
Query 473 ATAAGAATCTAACTGCAAAATATACGACAAAGAAAATGAT-TTTAATGAAAGTGTTCGAG 531
|||||||||| || |||||||||| ||||||||| ||||| ||| |||||||||| |||
Sbjct 546 ATAAGAATCTCACAGCAAAATATAGGACAAAGAATATGATGTTTT-TGAAAGTGTTGGAG 604
Query 532 GGTAGCTGGAAAGTTGAGCCAGACTACGTAGATCAGGAACGCTTGTGCAAGCCAAGGTTG 591
|||||||||||||| | |||||||| |||||||||||||||||||||||| ||||||||
Sbjct 605 GGTAGCTGGAAAGTGGTGCCAGACTTTGTAGATCAGGAACGCTTGTGCAAGTCAAGGTTG 664
Query 592 CCAAAAAGTCGAAAAGAATACAAAATATGTAGCGGTGGACAAGGAAAAGTTGGGTCGAAA 651
|| ||||||||| |||||||||||| |||||| |||||||||||||| |||||||| ||
Sbjct 665 CCGAAAAGTCGAGAAGAATACAAAAGATGTAGTGGTGGACAAGGAAAGGTTGGGTCCAAG 724
Query 652 GTTTCAATGGAGCAGATTTTTCAGCCTTCTTCTCTTCTTAATCTACCACCGGTTTCATGG 711
|| | ||||||||||| ||| |||||||| ||||||||||||| ||||||||||| |||
Sbjct 725 GTGACCATGGAGCAGATCTTTAAGCCTTCTCCTCTTCTTAATCTGCCACCGGTTTCTTGG 784
Query 712 ATCATTTGTGGGATCACCATCAGAACCACCAAGATTCTGCTCGAAGATCTTAGAAAAGCG 771
|| || ||||||| ||||||| ||||||||||||||||||||||||| || |||||||
Sbjct 785 ATAATCCGTGGGATTACCATCAAAACCACCAAGATTCTGCTCGAAGATATTCGAAAAGCA 844
Query 772 GGTACCTCTTTACGGAA-AGTTTGA 795
|||||| ||||||| || |||||||
Sbjct 845 GGTACCACTTTACG-AACAGTTTGA 868
> AT2G27670.1 | Symbols: | Domain of unknown function DUF220 |
chr2:11801568-11802891 REVERSE LENGTH=882
Length=882
Score = 468 bits (253), Expect = 4e-131
Identities = 498/613 (81%), Gaps = 29/613 (5%)
Strand=Plus/Plus
Query 169 AAGCATCCATGGTATGATGCACCAGCTAAGGTGAAGGTGACAACaaaaaaaGGTCTTTGC 228
|||||||||||||||||||| || |||| ||||||||||| ||||||||| |||||||||
Sbjct 241 AAGCATCCATGGTATGATGCTCCTGCTACGGTGAAGGTGAAAACAAAAAAGGGTCTTTGC 300
Query 229 CATTTGAACATAGAATTCAAATTGGGATTGCCTCCTGAAGCAGTCTAC-GAGATG-TTCA 286
|||||||||||||||||| |||||||| ||||||| || ||||| | |||||| || |
Sbjct 301 AATTTGAACATAGAATTCACATTGGGATGGCCTCCTCAATTAGTCT-CTGAGATGCTT-A 358
Query 287 CTAATCCAA-ACAACTTTCCTTTCTTCA-A--AGAGGACAAGGACGGGCGCCAACGTTTG 342
||||||||| | ||| | |||||||| | | || | |||| ||||||||||||
Sbjct 359 CTAATCCAAGA-AACATAAATTTCTTCAGATTATTCGATAGGGACTTTCGCCAACGTTTG 417
Query 343 GAAAACAAATCAACAAAGGTTTTGAAGAAGGATGGACCGAGGCAGACCAC-AGAGGTGGA 401
|| ||||||||||||||||||||||||||||| |||||| |||||| ||| |||| || |
Sbjct 418 GACAACAAATCAACAAAGGTTTTGAAGAAGGACGGACCGCGGCAGATCACGAGAG-TGAA 476
Query 402 AAAAGCTTTGTCCTGGAA-CTTTCTTGGGTGTTCTGGAGATATCCCAATACATCTTATAA 460
|||| ||||| | || || |||||| | ||| || |||||| |||||||| || |
Sbjct 477 AAAAACTTTGAGATATAAGCTC-CTTGGGCGCTCTATAGCTATCCCGATACATCTAATCA 535
Query 461 TCCACGAAAACCATAAGAATCTAACTGCAAAATATACGACAA-AGAAAATGATTTTA-AT 518
|| | ||||||||||| || ||||| |||||||||| || || |||||||||| | | ||
Sbjct 536 TCGATGAAAACCATAAAAACCTAACGGCAAAATATAAGA-AAGAGAAAATGATGT-ACAT 593
Query 519 GAAAGTGTTCGAGGGTAGCTGGAAAGTTGAGCCAG-ACTACGTAGATCAGGAACGCTTGT 577
||||||||| |||||||| |||||||| |||||| | |||| ||||||||||||||| |
Sbjct 594 GAAAGTGTTTGAGGGTAGATGGAAAGTGGAGCCACTA-TACGCAGATCAGGAACGCTTAT 652
Query 578 GCAAGCCAAGGTTGCCAAA-AAGTCGAA-AAGAATACAAAATATGTAGCGGTGGACAAGG 635
||||| | |||| || | || | ||| |||| ||||||| |||||| | ||| ||||
Sbjct 653 GCAAGTCTAGGTCGCGGATTAA-T-GAAGAAGAGTACAAAAAATGTAGTGACGGAAAAGG 710
Query 636 AAA-AGTTGGGTCGAAAGTTT-CAATGGAGCAGATTTTTCAGCCTTCTTCTCTTCTTAAT 693
|| | |||| || |||| | ||||||||||||| |||||||||| |||||||||||||
Sbjct 711 AAGGA-TTGGATC-AAAGGTGACAATGGAGCAGATCTTTCAGCCTTGTTCTCTTCTTAAT 768
Query 694 CTACCACCGGTTTCATGGATCATTTGTGGGATCACCATCAGAACCACCAAGA-TTCTGCT 752
| |||||| |||| ||| |||| ||| ||||||||||| ||| | |||| || ||||
Sbjct 769 GTGCCACCGATTTCTTGGTTCATCCGTGAGATCACCATCAAAACAATAAAGAATT-TGCT 827
Query 753 CGAAGATCTTAGA 765
|||||||||||||
Sbjct 828 CGAAGATCTTAGA 840
> AT1G23690.1 | Symbols: | Domain of unknown function DUF220 |
chr1:8377262-8378769 REVERSE LENGTH=1128
Length=1128
Score = 462 bits (250), Expect = 2e-129
Identities = 528/659 (80%), Gaps = 31/659 (5%)
Strand=Plus/Plus
Query 112 TATTATGACTTAGCTGAGG-TAAAGAAGGAATCAAAACTTTGGAGAGCTGCAGAGAAGAA 170
||||||||| |||||||| | |||||| || |||||||||||||||||||||||||||
Sbjct 271 TATTATGACAAAGCTGAGGCT-AAGAAGCAAGGAAAACTTTGGAGAGCTGCAGAGAAGAA 329
Query 171 GCATCCATGGTATGATGCACCAGCTAAGGTGAAGGTGACAACaaaaaaaGGTCTTTGCCA 230
| | |||||||||||||| || ||||||| ||||||||||||||||| |||||||||||
Sbjct 330 GAAACCATGGTATGATGCTCCTCCTAAGGTCAAGGTGACAACAAAAAAGGGTCTTTGCCA 389
Query 231 TTTGAACATAGAATTCAAATTGGGATTGCCTCCTGAAGCAGTCTACGAGATGTTCACTAA 290
|| ||||||| || | | | ||||||||||| |||| ||||| || ||||| ||||
Sbjct 390 CATGCACATAGAGTTGACAGTAGGATTGCCTCCGGAAGGGGTCTATGATTTGTTCGCTAA 449
Query 291 TCCAAACAACTTTCCTTTCTTCAAAGAG-GACAA-G-GAC-GGGCGCCAACGTTTGGAAA 346
||| ||| ||||||| ||||||| || ||||| | ||| |||||| ||| ||||||||
Sbjct 450 TCCGAACGACTTTCCATTCTTCAG-GATCGACAACGAGACTGGGCGCGAACTTTTGGAAA 508
Query 347 ACAAATCAACAAAGGTTTTGAAGAAGGATGGACCGAGGCAGACCACAGAGGT-GGAAAAA 405
||||||||| ||||||||||| ||| |||||||||||||||| | | | ||| ||| |||
Sbjct 509 ACAAATCAAGAAAGGTTTTGATGAAAGATGGACCGAGGCAGAGCGC-GCGGTTGGAGAAA 567
Query 406 GCTTTGTCCTGGAACTTTCTTGGGTGTTCTGGAGATATCCCAAT-ACATCTTATAATCCA 464
||| || ||||| || ||||| |||| | ||||| | | ||| | || ||| || | |
Sbjct 568 GCTCTGACCTGGGACGTTCTTTGGTGGTGTGGAGCTTTTCCATTTAC-TCTAATTGTTGA 626
Query 465 CGAAAACCATAAGAA-TCTA-ACTGCAAAATATACGACAA-AGAAAATGAT-TTTAATGA 520
|||||||| || || | || | | || ||||| || || ||||||||| |||| |||
Sbjct 627 TGAAAACCAAAAAAACTTTAGAG-G-AAGATATATGA-AAGAGAAAATGAAGTTTA-TGA 682
Query 521 AAG-TGTTCGAGGGTAGCTGGAAAGTTGAGCCAG-ACTACGTAGAT-CAGGAACGCTTGT 577
|| | || ||||||| |||||| | |||||| | ||||||||| ||| |||||||||
Sbjct 683 AATATTTT-GAGGGTAAATGGAAAATAGAGCCACTA-TACGTAGATTCAG-AACGCTTGT 739
Query 578 GCAAGC-CAAGGTTGCCAAAAAGTCGAAAAGAATACAAAATATGTAGCGGTGGACAAGGA 636
||||| || | ||| || |||||| |||||||||||| ||||||||| ||| |||||
Sbjct 740 GCAAGGACA-GAAAGCCGAAGAGTCGAGAAGAATACAAAAGATGTAGCGGCGGAGAAGGA 798
Query 637 AAAGTTGGGTCGAAAGTTTCAATGGAGCAGATTTTTC-AGCCTTCTTCTCTTCTTAATCT 695
|| |||| |||||||| ||||||| || || ||| | |||| || ||||||||||||
Sbjct 799 AAGGTTGCATCGAAAGTGACAATGGACCA-ATACTTCCAACCTTATTTTCTTCTTAATCT 857
Query 696 ACCACCGGTTTCATGG-ATCATTTGTGGGATCACCATCAGAACCACCAAGATTCTGCTC 753
|||||| |||| ||| | |||| ||||||||||||||| ||||||||| | |||||||
Sbjct 858 ACCACCACTTTCTTGGTA-CATTCGTGGGATCACCATCAAAACCACCAAAAATCTGCTC 915
> AT1G23600.1 | Symbols: | Domain of unknown function DUF220 |
chr1:8361004-8362485 REVERSE LENGTH=1134
Length=1134
Score = 335 bits (181), Expect = 4e-91
Identities = 489/632 (77%), Gaps = 44/632 (7%)
Strand=Plus/Plus
Query 144 AAAACTTTGGAGAGCTGCAGAGAAGAAGCATCCATGGTATGATGCACCAGCTAAGGTGAA 203
||| |||||||| | |||||||||||||||||||||||||||| | || | || |||||
Sbjct 280 AAATCTTTGGAGTGATGCAGAGAAGAAGCATCCATGGTATGATCCCCCTCCAAAAGTGAA 339
Query 204 GGTGACAACaaaaaaaGGTCTTTGCCATTTGAACATAGAATTCAAATTGGGATTGCCTCC 263
|||||||| ||||| |||||||||||| ||||||||||||| | ||| ||| |||||||
Sbjct 340 GGTGACAATGAAAAAGGGTCTTTGCCATATGAACATAGAATTGACATTAGGAGTGCCTCC 399
Query 264 TGAAGCAGTC-TACGAGA-TGTTCA-CTAATCCAAACAACTTTCCTTTCTTCAA-AGAGG 319
||| | || | ||||| | | |||| | ||||||| |||| | || ||||| | ||
Sbjct 400 TGATGGAG-CATACGA-ACTTTTCATC-AATCCAACCAACATACCATTCTTTGTTATAG- 455
Query 320 ACAAGG-ACGGGCGCCAACGTT-TGGAAAACAAATCAACAAAGGTTTTGAAGAAGGATGG 377
||||| | ||||| |||| || ||| ||||||||||| |||| |||||||||| |||||
Sbjct 456 ACAAGTCA-GGGCGACAAC-TTCTGGCAAACAAATCAAGAAAGATTTTGAAGAAAGATGG 513
Query 378 ACCGAGGCAGACCACAGA-GGTGGAA-AAAGCTTTGTCCTGGAACTTTCTTGGGTGT-TC 434
||| ||||||||| || |||| || |||||| || | ||| |||| ||| ||| | ||
Sbjct 514 ACCTAGGCAGACCGT-GAAGGTG-AAGAAAGCTGTGGCATGGGACTTCCTTTGGT-TCTC 570
Query 435 TGGAGATATCCCAAT-ACATCTTA-TAATCCACGAAAACCATAA-GAATCT--AACTGCA 489
|||| | |||| || | || ||| | || |||||||| | || || || || | |
Sbjct 571 TGGATCTCTCCCCATTA-AT-TTAATTGTCAACGAAAACAAAAAAGAC-CTTGAAGT--A 625
Query 490 AAATATACGACA-AAGAAAATGATTTTAATGAAAGTGTTCGAGGGTAGCTGGAAAGTTGA 548
||||||| || | || |||||||| || |||||||||||||| |||||||||||| | ||
Sbjct 626 AAATATAAGAAAGAA-AAAATGATGTTCATGAAAGTGTTCGAAGGTAGCTGGAAAATAGA 684
Query 549 GCCAG-ACTACGTAGAT-CAGGAACGCTTGTGCAAGC-CAAGGTTGCCAAAAAGTCGAAA 605
||| | || |||||| ||| | ||||| |||||| || | || || |||||| |
Sbjct 685 ACCACTA-TATGTAGATGCAG-ATCGCTTATGCAAGAACATGAAA-CCTAAGAGTCGAGA 741
Query 606 AGAATACAAAATATGTAGCGGTGGACAAGGAAAAGTTGGGTCGAAAGTTTCAATGGAGCA 665
||||||||||| |||||| || |||||||||||| ||| | ||||| | ||||| ||
Sbjct 742 AGAATACAAAAAATGTAGTGGCGGACAAGGAAAAATTGCACCAAAAGTGACTATGGACCA 801
Query 666 GAT-TTTTCAGCCTTCTTCTCTTCTTAA-TCTACCACCGGTTTCATGG-ATCATTTGTGG 722
|| ||||||||| | | ||||| |||| ||| || ||| |||| ||| || ||| ||
Sbjct 802 -ATATTTTCAGCCATATCCTCTT-TTAAATCTGCCGCCGTTTTCTTGGTAT-ATTCGTAA 858
Query 723 GATCACCATCA-GAACCACCAAGATTCTGCTC 753
|||||||||| || ||||||| | |||||||
Sbjct 859 CATCACCATCAAGA-CCACCAAAACTCTGCTC 889
> AT1G23620.1 | Symbols: | pseudogene, hypothetical protein |
chr1:8364662-8366449 REVERSE LENGTH=1788
Length=1788
Score = 80.5 bits (43), Expect = 2e-14
Identities = 68/80 (85%), Gaps = 2/80 (3%)
Strand=Plus/Plus
Query 133 AAGAAGGAATCA-AAACTTTGGAGAGCTGCAGAGAAGAAGCATCCATGGTATGATGCACC 191
|||||| ||| | |||||||||| ||| |||||||||||||||||||||||||||| ||
Sbjct 303 AAGAAGCAAT-ATGAACTTTGGAGTGCTTCAGAGAAGAAGCATCCATGGTATGATGCCCC 361
Query 192 AGCTAAGGTGAAGGTGACAA 211
| ||||| ||||| ||||
Sbjct 362 TCCGAAGGTCAAGGTAACAA 381
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38680293190
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5