BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg335662 Length=711 Score E Sequences producing significant alignments: (Bits) Value AT1G23810.1 | Symbols: | Paired amphipathic helix (PAH2) super... 778 0.0 AT1G27270.1 | Symbols: | Paired amphipathic helix (PAH2) super... 734 0.0 AT1G24250.1 | Symbols: | Paired amphipathic helix (PAH2) super... 568 3e-161 AT1G27260.1 | Symbols: | Paired amphipathic helix (PAH2) super... 556 8e-158 AT1G24220.1 | Symbols: | paired amphipathic helix repeat-conta... 174 9e-43 AT1G24230.1 | Symbols: | Paired amphipathic helix (PAH2) super... 150 1e-35 AT1G27240.1 | Symbols: | Paired amphipathic helix (PAH2) super... 110 3e-23 > AT1G23810.1 | Symbols: | Paired amphipathic helix (PAH2) superfamily protein | chr1:8417495-8418566 FORWARD LENGTH=726 Length=726 Score = 778 bits (421), Expect = 0.0 Identities = 600/685 (88%), Gaps = 17/685 (2%) Strand=Plus/Plus Query 35 TGGAAGATGCG-ATGTCGTACATCGATGCTGTGAGGGACGCATTGCAGGATGCTGAACCT 93 ||||||||| | | | | ||| || ||||||||| || ||||||| |||| || |||||| Sbjct 35 TGGAAGATG-GAAAGGCATACGTCAATGCTGTGAAGGTCGCATTGGAGGAAGCGGAACCT 93 Query 94 GAAAAATATGAAGAGTTTCTAAGAAC-CTTTCTTGATTTTG-GAGC-TGATAGAATCGGT 150 | ||||||| ||||||||||||| || ||||| ||| || ||| || || || ||| Sbjct 94 GCAAAATATCAAGAGTTTCTAAG-ACTCTTTCATGA-GGTGATAGCGCGA-AGGATGGGT 150 Query 151 ATAGCTGCTTTCAGTGCAAGCATGCAGGAACTCTTGAAAGATCACGTGAATCTGCT-TCT 209 || ||| ||||||||||| |||||||||| ||||||||||||||| || |||| | ||| Sbjct 151 ATGGCTACTTTCAGTGCACGCATGCAGGACCTCTTGAAAGATCACCCGAGTCTG-TGTCT 209 Query 210 TGGTTTCAATGTCTTCCTTCCACTTCAGTTTCAGATAAACATCCCTCCCGAGGCTAGC-A 268 |||||| |||||| | ||| ||| | ||| ||||| | ||||||||||||||||||| | Sbjct 210 TGGTTTAAATGTCATGCTTGCACCTGAGTATCAGAGAGCCATCCCTCCCGAGGCTAGCGA 269 Query 269 CAGAGTTTCATAAGGTGGTTAGAAGAAGCGTACCA---CCGAAGCCTACCATGGATGATG 325 ||||||||||||||||||| |||||||||||||| ||| |||||||||| ||||||| Sbjct 270 -AGAGTTTCATAAGGTGGTTGGAAGAAGCGTACCACGTCCGGAGCCTACCATAGATGATG 328 Query 326 CGACTTCATATCTCATTGCTGTCAAGAAAGCATTTCATGATGAACCTACAAAATATGAGG 385 |||||||||| ||||||||||| ||| |||||||||||||||||||| |||||||||||| Sbjct 329 CGACTTCATACCTCATTGCTGTGAAGGAAGCATTTCATGATGAACCTGCAAAATATGAGG 388 Query 386 AAATTATTAAGCTCTTGAATGATCTTAAAGCTCGCAGACTCGATGCTGCTAGTGTCATTG 445 |||| ||||||||||||||||| |||||||||||||| || |||| ||||||||||||| Sbjct 389 AAATGCTTAAGCTCTTGAATGATTTTAAAGCTCGCAGAGTCAATGCCGCTAGTGTCATTG 448 Query 446 CTAGGGTGGAGGAACTCATGAAAGATCACTTGAATCTGCTTCTTGGTTTCTGTGTCTTCC 505 |||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| Sbjct 449 CTAGGGTGGAGGAACTCATGAAAGATCACTCGAATCTGCTTTTTGGTTTCTGTGTCTTCC 508 Query 506 TTTCAGCTAAAATGAGTTTTATCACGAAGCTTAAGGTAAGGTTTCAGGGCGATGGTAGTC 565 ||||||||| || |||||||| |||||||||||||| || |||||||||||||||||||| Sbjct 509 TTTCAGCTACAACGAGTTTTACCACGAAGCTTAAGGCAAAGTTTCAGGGCGATGGTAGTC 568 Query 566 ATGTCGTTGACTCAGTTCTTCAGATAATGAGAATGTACAGTGAGGGAAACAAGTCCAAAA 625 | || ||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 569 AAGTAGTTGACTCAGTTCTTCAGATAATGAGAATGTACGGTGAGGGAAACAAGTCCAAAC 628 Query 626 ATGATGTGTATCAGGAGGTCGGTGCACTTATTCAGGGTCATGGA-GATTTACTCATGGAG 684 |||||| |||||||||| ||| ||||||| |||||||||||| | |||||| |||||||| Sbjct 629 ATGATGCGTATCAGGAGATCGTTGCACTTGTTCAGGGTCATG-ACGATTTAGTCATGGAG 687 Query 685 CTTTCAGAAATTTTCAGTGATTCAT 709 |||||| ||||||||| |||| ||| Sbjct 688 CTTTCACAAATTTTCACTGATCCAT 712 > AT1G27270.1 | Symbols: | Paired amphipathic helix (PAH2) superfamily protein | chr1:9472077-9473149 FORWARD LENGTH=726 Length=726 Score = 734 bits (397), Expect = 0.0 Identities = 599/694 (86%), Gaps = 23/694 (3%) Strand=Plus/Plus Query 37 GAAGATGCGATGTCGTACATCGATGCTGTGAGGGACGCATTGCAGGATGCTGAACCTGAA 96 ||||||| |||| | ||| |||||||||||| || ||||||||||||| ||||||||||| Sbjct 37 GAAGATGGGATGGCATACTTCGATGCTGTGAAGGTCGCATTGCAGGATACTGAACCTGAA 96 Query 97 AAATATGAAGAGTTTCTAAGAACCTTTCTTGATTTTGGAGCTGATAGAATCGGTATAGCT 156 |||||| |||||||| |||||| |||| |||||| | ||| ||||| ||||| | | Sbjct 97 AAATATCAAGAGTTTGTAAGAATCTTTATTGATTATACTGCTAATAGATTCGGTTTCGAA 156 Query 157 GCTTTCAGTGCAAGCATGCAGGAACTCTTGAAAGATCACGTGAATCTGCT-TCTTGGTTT 215 |||| ||||||||| ||||||||||| ||| |||||||| ||||||| | || ||| || Sbjct 157 ACTTTGAGTGCAAGCTTGCAGGAACTCCTGAGAGATCACGCGAATCTG-TGTCATGG-TT 214 Query 216 C-AATGTCTTCCTTCCACTTCA-GTTTCAGATAAACATCCCTCCCGAGGCTAGCACAGAG 273 | |||||||| ||||| || | ||| |||| | ||||||||||||||||||| ||||| Sbjct 215 CAAATGTCTTACTTCC-TTTTAGGTTGCAGACAGCCATCCCTCCCGAGGCTAGCGCAGAG 273 Query 274 -TT----TC-ATAAGGTGGTTAGAAGAAGCGTACCA----C-----CGAAGCCTACCATG 318 || || ||||||||||| |||||||||||||| | || |||||||||| Sbjct 274 TTTCACATCAATAAGGTGGTTGGAAGAAGCGTACCACCGGCGGTGGCGGTGCCTACCATG 333 Query 319 GATGATGCGACTTCATATCTCATTGCTGTCAAGAAAGCATTTCATGATGAACCTACAAAA 378 |||||||||||||| || |||| |||||| ||| |||||||||||||||||||| ||||| Sbjct 334 GATGATGCGACTTCTTACCTCAATGCTGTGAAGGAAGCATTTCATGATGAACCTGCAAAA 393 Query 379 TATGA-GGAAATTATTAAGCTCTTGAATGATCTTAAAGCTCGCAGACTCGATGCTGCTAG 437 ||| | |||||||| ||||||||||| ||||||||||||||| ||| || |||| ||||| Sbjct 394 TAT-ATGGAAATTACTAAGCTCTTGACTGATCTTAAAGCTCGTAGAATCAATGCCGCTAG 452 Query 438 TGTCATTGCTAGGGTGGAGGAACTCATGAAAGATCACTTGAATCTGCTTCTTGGTTTCTG 497 ||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 453 TGTCATTGCAAGGATGGAGGAACTCTTGAAAGATCACTTGAATCTGCTTCTTGGTTTCTG 512 Query 498 TGTCTTCCTTTCAGCTAAAATGAGTTTTATCACGAAGCTTAAGGTAAGGTTTCAGGGCGA 557 ||||||||||||| ||| || ||| ||||||||||||||||||| |||||||| |||||| Sbjct 513 TGTCTTCCTTTCACCTACAAGGAGGTTTATCACGAAGCTTAAGGCAAGGTTTCTGGGCGA 572 Query 558 TGGTAGTCATGTCGTTGACTCAGTTCTTCAGATAATGAGAATGTACAGTGAGGGAAACAA 617 ||||||||| || |||||||||||||| |||||| |||||||| |||||||||||||||| Sbjct 573 TGGTAGTCAAGTAGTTGACTCAGTTCTCCAGATATTGAGAATGCACAGTGAGGGAAACAA 632 Query 618 GTCCAAAAATGATGTGTATCAGGAGGTCGGTGCACTTATTCAGGGTCATGGAGATTTACT 677 ||||||| |||| | || |||||||||| ||||||||||||||||||||| ||||||||| Sbjct 633 GTCCAAAGATGAGGCGTCTCAGGAGGTCCGTGCACTTATTCAGGGTCATGAAGATTTACT 692 Query 678 CATGGAGCTTTCAGAAATTTTCAGTGATTCATAG 711 |||||||||||||||||||||||||||| ||||| Sbjct 693 CATGGAGCTTTCAGAAATTTTCAGTGATCCATAG 726 > AT1G24250.1 | Symbols: | Paired amphipathic helix (PAH2) superfamily protein | chr1:8588442-8589546 REVERSE LENGTH=759 Length=759 Score = 568 bits (307), Expect = 3e-161 Identities = 391/431 (91%), Gaps = 7/431 (2%) Strand=Plus/Plus Query 280 AAGGTGGTTAGAAGAAG-CGTACCA---CCGAAGCCTACCATGGATGATGCGACTTCATA 335 ||||||||| ||||||| | ||||| ||| |||||||||| ||||||||||||||||| Sbjct 313 AAGGTGGTTGGAAGAAGTC-TACCACGTCCGGAGCCTACCATAGATGATGCGACTTCATA 371 Query 336 TCTCATTGCTGTCAAGAAAGCATTTCATGATGAACCTACAAAATATGAGGAAATTATTAA 395 || |||||||| ||| |||| ||||||||||||||| ||||||||| |||||| |||| Sbjct 372 CCTTATTGCTGTGAAGGAAGCCTTTCATGATGAACCTGCAAAATATGGGGAAATGCTTAA 431 Query 396 GCTCTTGAATGATCTTAAAGCTCGCAGACTCGATGCTGCTAGTGTCATTGCTAGGGTGGA 455 ||||||||| ||| |||||||||||||| ||||||| ||| ||||||||||||||||||| Sbjct 432 GCTCTTGAAAGATTTTAAAGCTCGCAGAGTCGATGCCGCTTGTGTCATTGCTAGGGTGGA 491 Query 456 GGAACTCATGAAAGATCACTTGAATCTGCTTCTTGGTTTCTGTGTCTTCCTTTCAGCTAA 515 ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 492 GGAACTCATGAAAGATCACTTGAATCTGCTTTTTGGTTTCTGTGTCTTCCTTTCAGCTAC 551 Query 516 AATGAGTTTTATCACGAAGCTTAAGGTAAGGTTTCAGGGCGATGGTAGTCATGTCGTTGA 575 || |||||||| |||||||||||||| |||||||||||||||||||||||| || ||||| Sbjct 552 AACGAGTTTTACCACGAAGCTTAAGGCAAGGTTTCAGGGCGATGGTAGTCAAGTAGTTGA 611 Query 576 CTCAGTTCTTCAGATAATGAGAATGTACAGTGAGGGAAACAAGTCCAAAAATGATGTGTA 635 |||||||||||||||||||||||||||| |||||||||||||||||||| |||||| ||| Sbjct 612 CTCAGTTCTTCAGATAATGAGAATGTACGGTGAGGGAAACAAGTCCAAACATGATGCGTA 671 Query 636 TCAGGAGGTCGGTGCACTTATTCAGGGTCATGGA-GATTTACTCATGGAGCTTTCAGAAA 694 ||||||||||| ||||||| |||||||||||| | |||||| |||||||||||||| ||| Sbjct 672 TCAGGAGGTCGTTGCACTTGTTCAGGGTCATG-ACGATTTAGTCATGGAGCTTTCACAAA 730 Query 695 TTTTCAGTGAT 705 |||| | |||| Sbjct 731 TTTTGACTGAT 741 > AT1G27260.1 | Symbols: | Paired amphipathic helix (PAH2) superfamily protein | chr1:9469948-9470967 FORWARD LENGTH=669 Length=669 Score = 556 bits (301), Expect = 8e-158 Identities = 558/676 (83%), Gaps = 41/676 (6%) Strand=Plus/Plus Query 52 TACATCGA-TGCTGTGAGGGAC-GCATTGCAGGATGCTGAACCTGAAAAATAT-GAAGAG 108 |||||| | ||||||||||||| | ||| | | || |||||||| ||||||| | | || Sbjct 19 TACATC-ATTGCTGTGAGGGACAG-ATTTC--G-TGATGAACCTGCAAAATATCG-ACAG 72 Query 109 TTTCTAAGAACCT-TT-CTTGATTTTGGAGCT-GATAGAATCGGTATAGCTGCTTTCAGT 165 |||||||| ||| || | |||| | ||||| | |||||||| || |||| ||||| | Sbjct 73 TTTCTAAG--CCTCTTGCGTGATCGTCGAGCTCG-TAGAATCGATAAAGCTACTTTCTTT 129 Query 166 GCA-AGCATGCAGGAACTC-TTGAAAGATCACGTGAATCTGCTTCTTGGTTTCAATGTCT 223 | | || || ||| ||| || ||||||||| || |||||||||||||||| |||| || Sbjct 130 GTAGGGC-TGGTGGAGCTCATT-AAAGATCACTTGGATCTGCTTCTTGGTTTTAATGCCT 187 Query 224 TCCTTCCA-CTTCA-GTTTCAGATAAACATCCCTCCCGAGGCTAGCACAGAGTTTCATAA 281 | |||||| | | | |||||||||| |||| | || | ||| | || ||||| || Sbjct 188 TACTTCCAGC-T-AGGTTTCAGATACCCATCAC-ACC-A-GCT-G----GA-TTTCAAAA 236 Query 282 GGTGGTTAGAAGAAGCGTACCACCGAAGCCTACCATGGATGATGCGACTTCATATCTC-A 340 |||||| ||||||||||||||||| || | || || || |||||||||||||| ||| | Sbjct 237 CGTGGTTGGAAGAAGCGTACCACCGGAGACAACTATCGAGGATGCGACTTCATACCTCAA 296 Query 341 TTGCTGTCAAGAAAGCATTTCATGATGAACCTACAAAATATGAGGAAATTATTAAGCTCT 400 | |||| |||| ||||||||||||||||||| |||||||||||||| || ||||||||| Sbjct 297 CT-CTGTGAAGAGAGCATTTCATGATGAACCTGCAAAATATGAGGAACTTCTTAAGCTCT 355 Query 401 TGAATGATCTTAAAGCTCGCAGACTCGATGCTGCTAGTGTCATTGCTAGGGTGGAGGAAC 460 |||||||| || ||||||| ||| |||||||||||||| ||||||| || ||||| |||| Sbjct 356 TGAATGATATTGAAGCTCGTAGAGTCGATGCTGCTAGTTTCATTGCAAGTGTGGAAGAAC 415 Query 461 TCATGAAAGATCACTTGAATCTGCTTCTTGGTTTCTGTGTCTTCCTTTCAGCTAAAATG- 519 |||||||||||||| || ||||||| ||||||| ||||||||||||||||| ||||| Sbjct 416 TCATGAAAGATCACCAGACTCTGCTTAATGGTTTCAGTGTCTTCCTTTCAGCTGAAATGA 475 Query 520 AGTTTTATCACGAAGCTTAAGGTAAGGTTTCAGGGCGATGGTAGTCATGTCGTTGACTCA 579 || ||||||| ||||||||||| || |||||||||||||||||||||||| | |||||| Sbjct 476 AG-TTTATCAGGAAGCTTAAGGCAAAGTTTCAGGGCGATGGTAGTCATGTAGCTGACTCT 534 Query 580 GTTCTTCAGATAATGAGAATGTACAGTGAGGGAAACAAGTCCAAAAATGATGTGTATC-A 638 |||||||||||| ||||||||||||||||||||||||||||||||| ||| | || || | Sbjct 535 GTTCTTCAGATATTGAGAATGTACAGTGAGGGAAACAAGTCCAAAAGTGAGGCGT-TCCA 593 Query 639 GGAGGTCGGTGCACTTATTCAGGGTCATGGAGATTTACTCATGGAGCTT-TCAGAA--AT 695 |||||||| | ||||| |||||| ||||| ||||||| ||||||||||| | | || || Sbjct 594 GGAGGTCGTTCCACTTGTTCAGGATCATGAAGATTTAGTCATGGAGCTTATAAAAATTAT 653 Query 696 TTTCAGTGATTCATAG 711 |||||||||| ||||| Sbjct 654 TTTCAGTGATCCATAG 669 > AT1G24220.1 | Symbols: | paired amphipathic helix repeat-containing protein | chr1:8578658-8582413 REVERSE LENGTH=2235 Length=2235 Score = 174 bits (94), Expect = 9e-43 Identities = 129/146 (88%), Gaps = 1/146 (1%) Strand=Plus/Plus Query 543 AAGGTTTCAGGGCGATGGTAGTCATGTCGTTGACTCAGTTCTTCAGATAATGAGAATGTA 602 ||||||||||||| ||||||||||||| ||| |||||||||| |||||| ||| |||||| Sbjct 2031 AAGGTTTCAGGGCTATGGTAGTCATGTAGTTAACTCAGTTCTCCAGATATTGAAAATGTA 2090 Query 603 CAGTGAGGGAAACAAGTCCAAAAATGATGTGTATCAGGAGGTCGGTGCACTTATTCAGGG 662 |||||||||||||||||||||| |||| | |||||||||||||| | ||||| ||||| Sbjct 2091 CAGTGAGGGAAACAAGTCCAAAGATGAGGCGTATCAGGAGGTCGTTTCACTTCTTCAGAA 2150 Query 663 TCATGGAGATTTACTCATGGAGCTTT 688 ||||| ||||||| |||||||| ||| Sbjct 2151 TCATGTAGATTTAGTCATGGAG-TTT 2175 > AT1G24230.1 | Symbols: | Paired amphipathic helix (PAH2) superfamily protein | chr1:8584039-8585135 REVERSE LENGTH=738 Length=738 Score = 150 bits (81), Expect = 1e-35 Identities = 188/238 (79%), Gaps = 14/238 (6%) Strand=Plus/Plus Query 1 ATGGTTGGGA-G-AGACTTATCCCCGG-ATTTATGTATGGAAGATGCGATGTCGTACATC 57 |||||| ||| | || |||||| |||| |||| ||| || || |||| ||| |||||| Sbjct 1 ATGGTT-GGAGGAAG-CTTATCACCGGCGTTTA-CTATTGATGAAGCGACGTCATACATC 57 Query 58 GATGCTGTGAGGGACGCA-TTGCAGGATGCTGAACCTGAAAAATAT-GAAGAGTTTCTAA 115 ||||||||| ||| ||| ||| || || | |||||| ||||||| | ||||||||| Sbjct 58 AATGCTGTGAAGGAAGCATTTG-GGGCTGATCAACCTGCAAAATATCG-AGAGTTTCT-C 114 Query 116 GA-ACCTTTCTTGATTTTGGAGCTGATAGAATCGGTATAGCTGCTTTCAG-TGCAAGCAT 173 || | | | || ||||| ||||| ||||| ||| | ||||| | || | | |||| || Sbjct 115 GACATCATGCTGGATTTAAGAGCTAATAGAGTCGATTTAGCTACCGTC-GTTCCAAGGAT 173 Query 174 GCAGGAACTCTTGAAAGATCACGTGAATCTGCTTCTTGGTTTCAATGTCTTCCTTCCA 231 || |||||||||||||||||||||||||||||| ||| ||||||||| |||||||||| Sbjct 174 GCGGGAACTCTTGAAAGATCACGTGAATCTGCTACTTCGTTTCAATGCCTTCCTTCCA 231 > AT1G27240.1 | Symbols: | Paired amphipathic helix (PAH2) superfamily protein | chr1:9466237-9467076 FORWARD LENGTH=561 Length=561 Score = 110 bits (59), Expect = 3e-23 Identities = 149/192 (78%), Gaps = 7/192 (4%) Strand=Plus/Plus Query 321 TGATGCGAC-TTCATATCTCATTGCTGTCAAGAAAGCATTTCATGATGAACCTACAAAAT 379 ||||||| | ||||||| ||| |||||| ||| ||||||||||||||||||||||||||| Sbjct 39 TGATGCG-CATTCATATATCACTGCTGTGAAGGAAGCATTTCATGATGAACCTACAAAAT 97 Query 380 ATGAGGAAATTATTAAGCTCTTGAATGATCTTAAAGCTCGCAGACTCGATGCTGCTAGTG 439 |||| || ||||||| ||| |||||||| || | || | ||||| ||||||| Sbjct 98 ATGAAGAGTTTATTAAACTCATGAATGATATTCGTGATCATGGTGTCGATAAGGCTAGTG 157 Query 440 TCATTGCTAGGGTGGAG-GAACTCATGAAAG-ATCACTTGAATCTGCTTCTTGGTTTCTG 497 |||||| | | || | |||||||| |||| | ||| || ||||||| |||||| | Sbjct 158 GCATTGCAAAGTTG-ACTGAACTCATTAAAGGA-CACCCGAGGCTGCTTCGTGGTTTAAG 215 Query 498 TGTCTTCCTTTC 509 | ||||| |||| Sbjct 216 TTTCTTC-TTTC 226 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 34460624842 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5