BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg335662
Length=711
Score E
Sequences producing significant alignments: (Bits) Value
AT1G23810.1 | Symbols: | Paired amphipathic helix (PAH2) super... 778 0.0
AT1G27270.1 | Symbols: | Paired amphipathic helix (PAH2) super... 734 0.0
AT1G24250.1 | Symbols: | Paired amphipathic helix (PAH2) super... 568 3e-161
AT1G27260.1 | Symbols: | Paired amphipathic helix (PAH2) super... 556 8e-158
AT1G24220.1 | Symbols: | paired amphipathic helix repeat-conta... 174 9e-43
AT1G24230.1 | Symbols: | Paired amphipathic helix (PAH2) super... 150 1e-35
AT1G27240.1 | Symbols: | Paired amphipathic helix (PAH2) super... 110 3e-23
> AT1G23810.1 | Symbols: | Paired amphipathic helix (PAH2) superfamily
protein | chr1:8417495-8418566 FORWARD LENGTH=726
Length=726
Score = 778 bits (421), Expect = 0.0
Identities = 600/685 (88%), Gaps = 17/685 (2%)
Strand=Plus/Plus
Query 35 TGGAAGATGCG-ATGTCGTACATCGATGCTGTGAGGGACGCATTGCAGGATGCTGAACCT 93
||||||||| | | | | ||| || ||||||||| || ||||||| |||| || ||||||
Sbjct 35 TGGAAGATG-GAAAGGCATACGTCAATGCTGTGAAGGTCGCATTGGAGGAAGCGGAACCT 93
Query 94 GAAAAATATGAAGAGTTTCTAAGAAC-CTTTCTTGATTTTG-GAGC-TGATAGAATCGGT 150
| ||||||| ||||||||||||| || ||||| ||| || ||| || || || |||
Sbjct 94 GCAAAATATCAAGAGTTTCTAAG-ACTCTTTCATGA-GGTGATAGCGCGA-AGGATGGGT 150
Query 151 ATAGCTGCTTTCAGTGCAAGCATGCAGGAACTCTTGAAAGATCACGTGAATCTGCT-TCT 209
|| ||| ||||||||||| |||||||||| ||||||||||||||| || |||| | |||
Sbjct 151 ATGGCTACTTTCAGTGCACGCATGCAGGACCTCTTGAAAGATCACCCGAGTCTG-TGTCT 209
Query 210 TGGTTTCAATGTCTTCCTTCCACTTCAGTTTCAGATAAACATCCCTCCCGAGGCTAGC-A 268
|||||| |||||| | ||| ||| | ||| ||||| | ||||||||||||||||||| |
Sbjct 210 TGGTTTAAATGTCATGCTTGCACCTGAGTATCAGAGAGCCATCCCTCCCGAGGCTAGCGA 269
Query 269 CAGAGTTTCATAAGGTGGTTAGAAGAAGCGTACCA---CCGAAGCCTACCATGGATGATG 325
||||||||||||||||||| |||||||||||||| ||| |||||||||| |||||||
Sbjct 270 -AGAGTTTCATAAGGTGGTTGGAAGAAGCGTACCACGTCCGGAGCCTACCATAGATGATG 328
Query 326 CGACTTCATATCTCATTGCTGTCAAGAAAGCATTTCATGATGAACCTACAAAATATGAGG 385
|||||||||| ||||||||||| ||| |||||||||||||||||||| ||||||||||||
Sbjct 329 CGACTTCATACCTCATTGCTGTGAAGGAAGCATTTCATGATGAACCTGCAAAATATGAGG 388
Query 386 AAATTATTAAGCTCTTGAATGATCTTAAAGCTCGCAGACTCGATGCTGCTAGTGTCATTG 445
|||| ||||||||||||||||| |||||||||||||| || |||| |||||||||||||
Sbjct 389 AAATGCTTAAGCTCTTGAATGATTTTAAAGCTCGCAGAGTCAATGCCGCTAGTGTCATTG 448
Query 446 CTAGGGTGGAGGAACTCATGAAAGATCACTTGAATCTGCTTCTTGGTTTCTGTGTCTTCC 505
|||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 449 CTAGGGTGGAGGAACTCATGAAAGATCACTCGAATCTGCTTTTTGGTTTCTGTGTCTTCC 508
Query 506 TTTCAGCTAAAATGAGTTTTATCACGAAGCTTAAGGTAAGGTTTCAGGGCGATGGTAGTC 565
||||||||| || |||||||| |||||||||||||| || ||||||||||||||||||||
Sbjct 509 TTTCAGCTACAACGAGTTTTACCACGAAGCTTAAGGCAAAGTTTCAGGGCGATGGTAGTC 568
Query 566 ATGTCGTTGACTCAGTTCTTCAGATAATGAGAATGTACAGTGAGGGAAACAAGTCCAAAA 625
| || ||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 569 AAGTAGTTGACTCAGTTCTTCAGATAATGAGAATGTACGGTGAGGGAAACAAGTCCAAAC 628
Query 626 ATGATGTGTATCAGGAGGTCGGTGCACTTATTCAGGGTCATGGA-GATTTACTCATGGAG 684
|||||| |||||||||| ||| ||||||| |||||||||||| | |||||| ||||||||
Sbjct 629 ATGATGCGTATCAGGAGATCGTTGCACTTGTTCAGGGTCATG-ACGATTTAGTCATGGAG 687
Query 685 CTTTCAGAAATTTTCAGTGATTCAT 709
|||||| ||||||||| |||| |||
Sbjct 688 CTTTCACAAATTTTCACTGATCCAT 712
> AT1G27270.1 | Symbols: | Paired amphipathic helix (PAH2) superfamily
protein | chr1:9472077-9473149 FORWARD LENGTH=726
Length=726
Score = 734 bits (397), Expect = 0.0
Identities = 599/694 (86%), Gaps = 23/694 (3%)
Strand=Plus/Plus
Query 37 GAAGATGCGATGTCGTACATCGATGCTGTGAGGGACGCATTGCAGGATGCTGAACCTGAA 96
||||||| |||| | ||| |||||||||||| || ||||||||||||| |||||||||||
Sbjct 37 GAAGATGGGATGGCATACTTCGATGCTGTGAAGGTCGCATTGCAGGATACTGAACCTGAA 96
Query 97 AAATATGAAGAGTTTCTAAGAACCTTTCTTGATTTTGGAGCTGATAGAATCGGTATAGCT 156
|||||| |||||||| |||||| |||| |||||| | ||| ||||| ||||| | |
Sbjct 97 AAATATCAAGAGTTTGTAAGAATCTTTATTGATTATACTGCTAATAGATTCGGTTTCGAA 156
Query 157 GCTTTCAGTGCAAGCATGCAGGAACTCTTGAAAGATCACGTGAATCTGCT-TCTTGGTTT 215
|||| ||||||||| ||||||||||| ||| |||||||| ||||||| | || ||| ||
Sbjct 157 ACTTTGAGTGCAAGCTTGCAGGAACTCCTGAGAGATCACGCGAATCTG-TGTCATGG-TT 214
Query 216 C-AATGTCTTCCTTCCACTTCA-GTTTCAGATAAACATCCCTCCCGAGGCTAGCACAGAG 273
| |||||||| ||||| || | ||| |||| | ||||||||||||||||||| |||||
Sbjct 215 CAAATGTCTTACTTCC-TTTTAGGTTGCAGACAGCCATCCCTCCCGAGGCTAGCGCAGAG 273
Query 274 -TT----TC-ATAAGGTGGTTAGAAGAAGCGTACCA----C-----CGAAGCCTACCATG 318
|| || ||||||||||| |||||||||||||| | || ||||||||||
Sbjct 274 TTTCACATCAATAAGGTGGTTGGAAGAAGCGTACCACCGGCGGTGGCGGTGCCTACCATG 333
Query 319 GATGATGCGACTTCATATCTCATTGCTGTCAAGAAAGCATTTCATGATGAACCTACAAAA 378
|||||||||||||| || |||| |||||| ||| |||||||||||||||||||| |||||
Sbjct 334 GATGATGCGACTTCTTACCTCAATGCTGTGAAGGAAGCATTTCATGATGAACCTGCAAAA 393
Query 379 TATGA-GGAAATTATTAAGCTCTTGAATGATCTTAAAGCTCGCAGACTCGATGCTGCTAG 437
||| | |||||||| ||||||||||| ||||||||||||||| ||| || |||| |||||
Sbjct 394 TAT-ATGGAAATTACTAAGCTCTTGACTGATCTTAAAGCTCGTAGAATCAATGCCGCTAG 452
Query 438 TGTCATTGCTAGGGTGGAGGAACTCATGAAAGATCACTTGAATCTGCTTCTTGGTTTCTG 497
||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 453 TGTCATTGCAAGGATGGAGGAACTCTTGAAAGATCACTTGAATCTGCTTCTTGGTTTCTG 512
Query 498 TGTCTTCCTTTCAGCTAAAATGAGTTTTATCACGAAGCTTAAGGTAAGGTTTCAGGGCGA 557
||||||||||||| ||| || ||| ||||||||||||||||||| |||||||| ||||||
Sbjct 513 TGTCTTCCTTTCACCTACAAGGAGGTTTATCACGAAGCTTAAGGCAAGGTTTCTGGGCGA 572
Query 558 TGGTAGTCATGTCGTTGACTCAGTTCTTCAGATAATGAGAATGTACAGTGAGGGAAACAA 617
||||||||| || |||||||||||||| |||||| |||||||| ||||||||||||||||
Sbjct 573 TGGTAGTCAAGTAGTTGACTCAGTTCTCCAGATATTGAGAATGCACAGTGAGGGAAACAA 632
Query 618 GTCCAAAAATGATGTGTATCAGGAGGTCGGTGCACTTATTCAGGGTCATGGAGATTTACT 677
||||||| |||| | || |||||||||| ||||||||||||||||||||| |||||||||
Sbjct 633 GTCCAAAGATGAGGCGTCTCAGGAGGTCCGTGCACTTATTCAGGGTCATGAAGATTTACT 692
Query 678 CATGGAGCTTTCAGAAATTTTCAGTGATTCATAG 711
|||||||||||||||||||||||||||| |||||
Sbjct 693 CATGGAGCTTTCAGAAATTTTCAGTGATCCATAG 726
> AT1G24250.1 | Symbols: | Paired amphipathic helix (PAH2) superfamily
protein | chr1:8588442-8589546 REVERSE LENGTH=759
Length=759
Score = 568 bits (307), Expect = 3e-161
Identities = 391/431 (91%), Gaps = 7/431 (2%)
Strand=Plus/Plus
Query 280 AAGGTGGTTAGAAGAAG-CGTACCA---CCGAAGCCTACCATGGATGATGCGACTTCATA 335
||||||||| ||||||| | ||||| ||| |||||||||| |||||||||||||||||
Sbjct 313 AAGGTGGTTGGAAGAAGTC-TACCACGTCCGGAGCCTACCATAGATGATGCGACTTCATA 371
Query 336 TCTCATTGCTGTCAAGAAAGCATTTCATGATGAACCTACAAAATATGAGGAAATTATTAA 395
|| |||||||| ||| |||| ||||||||||||||| ||||||||| |||||| ||||
Sbjct 372 CCTTATTGCTGTGAAGGAAGCCTTTCATGATGAACCTGCAAAATATGGGGAAATGCTTAA 431
Query 396 GCTCTTGAATGATCTTAAAGCTCGCAGACTCGATGCTGCTAGTGTCATTGCTAGGGTGGA 455
||||||||| ||| |||||||||||||| ||||||| ||| |||||||||||||||||||
Sbjct 432 GCTCTTGAAAGATTTTAAAGCTCGCAGAGTCGATGCCGCTTGTGTCATTGCTAGGGTGGA 491
Query 456 GGAACTCATGAAAGATCACTTGAATCTGCTTCTTGGTTTCTGTGTCTTCCTTTCAGCTAA 515
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 492 GGAACTCATGAAAGATCACTTGAATCTGCTTTTTGGTTTCTGTGTCTTCCTTTCAGCTAC 551
Query 516 AATGAGTTTTATCACGAAGCTTAAGGTAAGGTTTCAGGGCGATGGTAGTCATGTCGTTGA 575
|| |||||||| |||||||||||||| |||||||||||||||||||||||| || |||||
Sbjct 552 AACGAGTTTTACCACGAAGCTTAAGGCAAGGTTTCAGGGCGATGGTAGTCAAGTAGTTGA 611
Query 576 CTCAGTTCTTCAGATAATGAGAATGTACAGTGAGGGAAACAAGTCCAAAAATGATGTGTA 635
|||||||||||||||||||||||||||| |||||||||||||||||||| |||||| |||
Sbjct 612 CTCAGTTCTTCAGATAATGAGAATGTACGGTGAGGGAAACAAGTCCAAACATGATGCGTA 671
Query 636 TCAGGAGGTCGGTGCACTTATTCAGGGTCATGGA-GATTTACTCATGGAGCTTTCAGAAA 694
||||||||||| ||||||| |||||||||||| | |||||| |||||||||||||| |||
Sbjct 672 TCAGGAGGTCGTTGCACTTGTTCAGGGTCATG-ACGATTTAGTCATGGAGCTTTCACAAA 730
Query 695 TTTTCAGTGAT 705
|||| | ||||
Sbjct 731 TTTTGACTGAT 741
> AT1G27260.1 | Symbols: | Paired amphipathic helix (PAH2) superfamily
protein | chr1:9469948-9470967 FORWARD LENGTH=669
Length=669
Score = 556 bits (301), Expect = 8e-158
Identities = 558/676 (83%), Gaps = 41/676 (6%)
Strand=Plus/Plus
Query 52 TACATCGA-TGCTGTGAGGGAC-GCATTGCAGGATGCTGAACCTGAAAAATAT-GAAGAG 108
|||||| | ||||||||||||| | ||| | | || |||||||| ||||||| | | ||
Sbjct 19 TACATC-ATTGCTGTGAGGGACAG-ATTTC--G-TGATGAACCTGCAAAATATCG-ACAG 72
Query 109 TTTCTAAGAACCT-TT-CTTGATTTTGGAGCT-GATAGAATCGGTATAGCTGCTTTCAGT 165
|||||||| ||| || | |||| | ||||| | |||||||| || |||| ||||| |
Sbjct 73 TTTCTAAG--CCTCTTGCGTGATCGTCGAGCTCG-TAGAATCGATAAAGCTACTTTCTTT 129
Query 166 GCA-AGCATGCAGGAACTC-TTGAAAGATCACGTGAATCTGCTTCTTGGTTTCAATGTCT 223
| | || || ||| ||| || ||||||||| || |||||||||||||||| |||| ||
Sbjct 130 GTAGGGC-TGGTGGAGCTCATT-AAAGATCACTTGGATCTGCTTCTTGGTTTTAATGCCT 187
Query 224 TCCTTCCA-CTTCA-GTTTCAGATAAACATCCCTCCCGAGGCTAGCACAGAGTTTCATAA 281
| |||||| | | | |||||||||| |||| | || | ||| | || ||||| ||
Sbjct 188 TACTTCCAGC-T-AGGTTTCAGATACCCATCAC-ACC-A-GCT-G----GA-TTTCAAAA 236
Query 282 GGTGGTTAGAAGAAGCGTACCACCGAAGCCTACCATGGATGATGCGACTTCATATCTC-A 340
|||||| ||||||||||||||||| || | || || || |||||||||||||| ||| |
Sbjct 237 CGTGGTTGGAAGAAGCGTACCACCGGAGACAACTATCGAGGATGCGACTTCATACCTCAA 296
Query 341 TTGCTGTCAAGAAAGCATTTCATGATGAACCTACAAAATATGAGGAAATTATTAAGCTCT 400
| |||| |||| ||||||||||||||||||| |||||||||||||| || |||||||||
Sbjct 297 CT-CTGTGAAGAGAGCATTTCATGATGAACCTGCAAAATATGAGGAACTTCTTAAGCTCT 355
Query 401 TGAATGATCTTAAAGCTCGCAGACTCGATGCTGCTAGTGTCATTGCTAGGGTGGAGGAAC 460
|||||||| || ||||||| ||| |||||||||||||| ||||||| || ||||| ||||
Sbjct 356 TGAATGATATTGAAGCTCGTAGAGTCGATGCTGCTAGTTTCATTGCAAGTGTGGAAGAAC 415
Query 461 TCATGAAAGATCACTTGAATCTGCTTCTTGGTTTCTGTGTCTTCCTTTCAGCTAAAATG- 519
|||||||||||||| || ||||||| ||||||| ||||||||||||||||| |||||
Sbjct 416 TCATGAAAGATCACCAGACTCTGCTTAATGGTTTCAGTGTCTTCCTTTCAGCTGAAATGA 475
Query 520 AGTTTTATCACGAAGCTTAAGGTAAGGTTTCAGGGCGATGGTAGTCATGTCGTTGACTCA 579
|| ||||||| ||||||||||| || |||||||||||||||||||||||| | ||||||
Sbjct 476 AG-TTTATCAGGAAGCTTAAGGCAAAGTTTCAGGGCGATGGTAGTCATGTAGCTGACTCT 534
Query 580 GTTCTTCAGATAATGAGAATGTACAGTGAGGGAAACAAGTCCAAAAATGATGTGTATC-A 638
|||||||||||| ||||||||||||||||||||||||||||||||| ||| | || || |
Sbjct 535 GTTCTTCAGATATTGAGAATGTACAGTGAGGGAAACAAGTCCAAAAGTGAGGCGT-TCCA 593
Query 639 GGAGGTCGGTGCACTTATTCAGGGTCATGGAGATTTACTCATGGAGCTT-TCAGAA--AT 695
|||||||| | ||||| |||||| ||||| ||||||| ||||||||||| | | || ||
Sbjct 594 GGAGGTCGTTCCACTTGTTCAGGATCATGAAGATTTAGTCATGGAGCTTATAAAAATTAT 653
Query 696 TTTCAGTGATTCATAG 711
|||||||||| |||||
Sbjct 654 TTTCAGTGATCCATAG 669
> AT1G24220.1 | Symbols: | paired amphipathic helix repeat-containing
protein | chr1:8578658-8582413 REVERSE LENGTH=2235
Length=2235
Score = 174 bits (94), Expect = 9e-43
Identities = 129/146 (88%), Gaps = 1/146 (1%)
Strand=Plus/Plus
Query 543 AAGGTTTCAGGGCGATGGTAGTCATGTCGTTGACTCAGTTCTTCAGATAATGAGAATGTA 602
||||||||||||| ||||||||||||| ||| |||||||||| |||||| ||| ||||||
Sbjct 2031 AAGGTTTCAGGGCTATGGTAGTCATGTAGTTAACTCAGTTCTCCAGATATTGAAAATGTA 2090
Query 603 CAGTGAGGGAAACAAGTCCAAAAATGATGTGTATCAGGAGGTCGGTGCACTTATTCAGGG 662
|||||||||||||||||||||| |||| | |||||||||||||| | ||||| |||||
Sbjct 2091 CAGTGAGGGAAACAAGTCCAAAGATGAGGCGTATCAGGAGGTCGTTTCACTTCTTCAGAA 2150
Query 663 TCATGGAGATTTACTCATGGAGCTTT 688
||||| ||||||| |||||||| |||
Sbjct 2151 TCATGTAGATTTAGTCATGGAG-TTT 2175
> AT1G24230.1 | Symbols: | Paired amphipathic helix (PAH2) superfamily
protein | chr1:8584039-8585135 REVERSE LENGTH=738
Length=738
Score = 150 bits (81), Expect = 1e-35
Identities = 188/238 (79%), Gaps = 14/238 (6%)
Strand=Plus/Plus
Query 1 ATGGTTGGGA-G-AGACTTATCCCCGG-ATTTATGTATGGAAGATGCGATGTCGTACATC 57
|||||| ||| | || |||||| |||| |||| ||| || || |||| ||| ||||||
Sbjct 1 ATGGTT-GGAGGAAG-CTTATCACCGGCGTTTA-CTATTGATGAAGCGACGTCATACATC 57
Query 58 GATGCTGTGAGGGACGCA-TTGCAGGATGCTGAACCTGAAAAATAT-GAAGAGTTTCTAA 115
||||||||| ||| ||| ||| || || | |||||| ||||||| | |||||||||
Sbjct 58 AATGCTGTGAAGGAAGCATTTG-GGGCTGATCAACCTGCAAAATATCG-AGAGTTTCT-C 114
Query 116 GA-ACCTTTCTTGATTTTGGAGCTGATAGAATCGGTATAGCTGCTTTCAG-TGCAAGCAT 173
|| | | | || ||||| ||||| ||||| ||| | ||||| | || | | |||| ||
Sbjct 115 GACATCATGCTGGATTTAAGAGCTAATAGAGTCGATTTAGCTACCGTC-GTTCCAAGGAT 173
Query 174 GCAGGAACTCTTGAAAGATCACGTGAATCTGCTTCTTGGTTTCAATGTCTTCCTTCCA 231
|| |||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||
Sbjct 174 GCGGGAACTCTTGAAAGATCACGTGAATCTGCTACTTCGTTTCAATGCCTTCCTTCCA 231
> AT1G27240.1 | Symbols: | Paired amphipathic helix (PAH2) superfamily
protein | chr1:9466237-9467076 FORWARD LENGTH=561
Length=561
Score = 110 bits (59), Expect = 3e-23
Identities = 149/192 (78%), Gaps = 7/192 (4%)
Strand=Plus/Plus
Query 321 TGATGCGAC-TTCATATCTCATTGCTGTCAAGAAAGCATTTCATGATGAACCTACAAAAT 379
||||||| | ||||||| ||| |||||| ||| |||||||||||||||||||||||||||
Sbjct 39 TGATGCG-CATTCATATATCACTGCTGTGAAGGAAGCATTTCATGATGAACCTACAAAAT 97
Query 380 ATGAGGAAATTATTAAGCTCTTGAATGATCTTAAAGCTCGCAGACTCGATGCTGCTAGTG 439
|||| || ||||||| ||| |||||||| || | || | ||||| |||||||
Sbjct 98 ATGAAGAGTTTATTAAACTCATGAATGATATTCGTGATCATGGTGTCGATAAGGCTAGTG 157
Query 440 TCATTGCTAGGGTGGAG-GAACTCATGAAAG-ATCACTTGAATCTGCTTCTTGGTTTCTG 497
|||||| | | || | |||||||| |||| | ||| || ||||||| |||||| |
Sbjct 158 GCATTGCAAAGTTG-ACTGAACTCATTAAAGGA-CACCCGAGGCTGCTTCGTGGTTTAAG 215
Query 498 TGTCTTCCTTTC 509
| ||||| ||||
Sbjct 216 TTTCTTC-TTTC 226
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34460624842
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5