BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg335696

Length=480
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G04420.1 | Symbols:  | Galactose oxidase/kelch repeat superf...   702    0.0  


> AT5G04420.1 | Symbols:  | Galactose oxidase/kelch repeat superfamily 
protein | chr5:1246604-1249943 REVERSE LENGTH=2025
Length=2025

 Score =  702 bits (380),  Expect = 0.0
 Identities = 406/419 (97%), Gaps = 0/419 (0%)
 Strand=Plus/Plus

Query  46   CATGCGGCAGTGGTTGTTGATGAGAAGCTCTACATTGTTGGTGGAAGCCGTAATGGCCGA  105
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  329  CATGCGGCAGTGGTTGTTGATGAGAAGCTCTACATTGTTGGTGGAAGCCGGAATGGCCGA  388

Query  106  TACTTATCTGATGTCCAGGTGTTTGATCTTAGAAGTTTGACTTGGTCGAGTTTGAAACTG  165
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  389  TACTTATCTGATGTCCAGGTGTTTGATCTTAGAAGTTTGACTTGGTCTAGTTTGAAACTG  448

Query  166  AAAACTGAATCATCAAGTACTGAGAACATTCAAGAGGATGATGGTAGCAGTTTACGGGAA  225
            |||||||||||||||||| |||| |||||||||||||||||||||||||| |||||||||
Sbjct  449  AAAACTGAATCATCAAGTGCTGATAACATTCAAGAGGATGATGGTAGCAGCTTACGGGAA  508

Query  226  GCTTTTCCTGCTATTTCAGACCACCGCATGATTAAGTGGGGAAACAAGCTTCTTTTGATT  285
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| 
Sbjct  509  GCTTTTCCTGCTATTTCAGACCATCGCATGATTAAGTGGGGAAACAAGCTTCTTTTGATC  568

Query  286  GGGGGACACTCCAAGAAGTCATCAGATAACATGTCAGTGCGGTTCATTGATTTGGAAACA  345
            |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  569  GGGGGACACTCCAAGAAGTCATCAGATAACATGTTAGTGCGGTTCATTGATTTGGAAACA  628

Query  346  CATTTATGTGGAGTCATTGATGTGTCTGGGAATGTTCTGGCTTCACGTGGTGGACATTCC  405
            |||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct  629  CATTCATGTGGAGTCATTGATGTGTTTGGGAATGTTCCGGCTTCACGTGGTGGACATTCC  688

Query  406  ATTACACTGGTTGGATCCCGAGTGCTTGTTTTTGGTGGGGAAGATAAGAACATGAGACT  464
            ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct  689  ATTACACTGGTTGGATCCCGAGTTCTTGTTTTTGGTGGGGAAGATAAGAACAGGAGACT  747



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22856536885


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5