BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg335709
Length=1251
Score E
Sequences producing significant alignments: (Bits) Value
AT1G26870.1 | Symbols: FEZ, ANAC009 | NAC (No Apical Meristem) ... 2037 0.0
> AT1G26870.1 | Symbols: FEZ, ANAC009 | NAC (No Apical Meristem)
domain transcriptional regulator superfamily protein | chr1:9312856-9314983
FORWARD LENGTH=1278
Length=1278
Score = 2037 bits (1103), Expect = 0.0
Identities = 1199/1246 (96%), Gaps = 3/1246 (0%)
Strand=Plus/Plus
Query 1 ATGGGAGAGAGAACCGATGACGGTGATCAGAAAATGGAGGATGTATTGTTGCCCGGATTT 60
|||||||| |||| | | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 22 ATGGGAGATAGAAACAACGACGGTGATCAGAAAATGGAGGATGTATTGTTGCCCGGATTT 81
Query 61 AGGTTTCATCCAACCGACGAAGAACTCGTAAGCTTCTACTTGAAGCGGAAGGTTCAACAC 120
||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 82 AGGTTTCATCCAACCGACGAAGAGCTCGTAAGCTTCTACCTGAAGCGGAAGGTTCAACAC 141
Query 121 AATCCTCTCTCCATTGAGCTCATAAGACAGCTCGATATCTACAAATACGACCCCTGGGAT 180
|| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 142 AACCCTCTCTCCATTGAGCTCATAAGACAACTCGATATCTACAAATATGACCCCTGGGAT 201
Query 181 CTTCCAAAGTTTGCGATGACGGGTGAAAAAGAATGGTACTTTTATTGTCCAAGGGACAGG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 202 CTTCCAAAGTTTGCGATGACGGGTGAAAAAGAATGGTACTTTTATTGTCCAAGGGACAGG 261
Query 241 AAGTATAGGAACAGCTCGAGGCCAAACCGAGTGACCGGAGCTGGTTTTTGGAAAGCCACG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 262 AAGTATAGGAACAGCTCGAGGCCAAACCGAGTGACCGGAGCTGGTTTTTGGAAAGCCACG 321
Query 301 GGAACGGATCGGCCGATATACTCGTCGGAGGGAAACAAATGCATAGGTTTAAAGAAGTCC 360
|||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 322 GGAACGGACCGGCCGATATACTCGTCAGAAGGAAACAAATGCATAGGTTTAAAGAAGTCC 381
Query 361 TTAGTGTTCTACAGAGGAAGAGCTGCGAAAGGAGTTAAGACTGATTGGATGATGCATGAG 420
||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 382 TTAGTGTTCTACAAAGGAAGAGCAGCGAAAGGAGTTAAGACTGATTGGATGATGCATGAG 441
Query 421 TTTCGTTTGCCTTCTCTCTCCGAACCATCTCCTTCTTCTAAGAGATTCTTTGACTCTCCT 480
||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 442 TTTCGTTTGCCTTCTCTCTCCGAACCATCTCCTCCTTCTAAGAGATTCTTCGACTCTCCT 501
Query 481 GTCTCTCCCAACGATTCATGGGCTATATGCAGAATCTTCAAAAAGACCAACACAACGACC 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 502 GTCTCTCCCAACGATTCATGGGCTATATGCAGAATCTTCAAAAAGACCAACACAACGACC 561
Query 541 CTAAGAGCTCTCTCTCACTCCTTTGTTTCCTCGTTACCACCAGAAACAAGCACCGACACA 600
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 562 CTAAGAGCTCTCTCTCACTCTTTTGTTTCCTCGTTACCACCAGAAACAAGCACCGACACA 621
Query 601 ATCTCCGACCAAAAGCCATCAAACACATACCATTTTTCTTCAGACAAGATCCTCAAAACT 660
|| || ||||||||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct 622 ATGTCTAACCAAAAGCAATCAAACACATACCATTTTTCTTCAGACAAGATCCTCAAACCT 681
Query 661 AGCTCTCACTTCCAGTTTCACCATGAGAATATGAACACTCCCAAAACTAGTAATAGTACA 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 682 AGCTCTCACTTCCAGTTTCACCATGAGAATATGAACACTCCCAAAACTAGTAATAGTACA 741
Query 721 ACTCCATCCGTTGCCACTATAAGTCCCTTCTCTTACTTGGATTTAACTTCATATGACAAA 780
|||||||||||| ||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 742 ACTCCATCCGTTCCCACTATAAGTCCCTTCTCTTACTTGGATTTCACTTCATACGACAAA 801
Query 781 TCCACCAACGTTTTCAATCCGGTTTCATGTTTAGACCAACAATACCTCACAAATCTCTTT 840
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 802 CCCACCAACGTTTTCAATCCGGTTTCATGTTTAGACCAACAATACCTCACAAATCTCTTT 861
Query 841 CTTGCCACACAAGAAACACAACCTCAGTTTCCCAAGCTCCCCTCGTCAAATGAAATCCCA 900
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 862 CTTGCCACACAAGAAACACAACCTCAGTTTCCCAGGCTCCCCTCGTCAAATGAAATCCCA 921
Query 901 TCGTTTCTACTAAACACGTCATCAGATTCGACCTTCTTGGGAGAATACACGAGCCATATC 960
|||||||| ||||||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct 922 TCGTTTCTGCTAAACACGTCTTCAGATTCGACCTTCTTGGGAGAATTCACGAGCCATATC 981
Query 961 GACCTCGGCGCAATGTTGGCCCAAGAGCAATGTCCTCCGCTAGTAAGCCTACCACAGGAG 1020
|||||| ||||| |||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 982 GACCTCAGCGCAGTGTTGGCCCAAGAGCAATGTCCCCCGCTTGTAAGCCTACCACAGGAG 1041
Query 1021 TACCAAGAGACAGGATTCGAAGGAAATGGTGTAGTGAAGAACATGCGTGGTTCCAATGAA 1080
|| |||||||| |||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 1042 TATCAAGAGACGGGATTCGAAGGAAATGGTATAATGAAGAACATGCGTGGTTCCAATGAA 1101
Query 1081 GATCATCAAGGT---CATTGCGACACACTTAGGTTTGATGATTTCGCTTCAACAATTGAT 1137
||||||| ||| ||||||||||||||| |||||||||||||| ||||||||||| ||
Sbjct 1102 GATCATCTTGGTGATCATTGCGACACACTTCGGTTTGATGATTTCACTTCAACAATTAAT 1161
Query 1138 GAGAACCATCGTCATCATCAAGACCTGAAACAGAACATGACGTTGCTGGAGAGTTATTAT 1197
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1162 GAGAACCATCGTCATCATCAAGACCTGAAACAGAACATGACATTGCTGGAGAGTTATTAT 1221
Query 1198 TCTTCTTTATCGTCCATCAATAGCGATTTGCCAGCTTGTTTCTCCA 1243
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1222 TCTTCTTTATCGTCCATCAATAGCGATTTGCCAGCTTGTTTCTCCA 1267
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61495667625
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5