BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg335722
Length=1071
Score E
Sequences producing significant alignments: (Bits) Value
AT1G26780.2 | Symbols: MYB117, AtMYB117, LOF1 | myb domain prot... 1653 0.0
> AT1G26780.2 | Symbols: MYB117, AtMYB117, LOF1 | myb domain protein
117 | chr1:9271029-9272463 FORWARD LENGTH=1084
Length=1084
Score = 1653 bits (895), Expect = 0.0
Identities = 1021/1081 (94%), Gaps = 11/1081 (1%)
Strand=Plus/Plus
Query 1 ATGTTTATAACGGAAAAACAAGTTTGGATGGATGAGATCGCCGCAAGAAGAGCTTCTTCT 60
||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct 5 ATGTTTATAACGGAAAAACAAGTGTGGATGGATGAGATCGTCGCAAGAAGAGCTTCTTCT 64
Query 61 TCTTGGGATTTCCCTTTCAACGAC---AATA---A-CA--TTCATCGTCGTCATTGCAAC 111
|||||||| ||||||||||||||| |||| | || ||||| |||||| ||||||
Sbjct 65 TCTTGGGACTTCCCTTTCAACGACATTAATATTCATCAGCATCATCATCGTCACTGCAAC 124
Query 112 ACAAGTCATGAGTTTGAAATCTTGAAGAGCCCTTC-TGGAGATGTAGCGGCTAACGAAGA 170
||||||||||||||||||||||||||||| || || |||||||||||||| | |||||||
Sbjct 125 ACAAGTCATGAGTTTGAAATCTTGAAGAGTCC-TCTTGGAGATGTAGCGGTTCACGAAGA 183
Query 171 AGAGAGTAATAATCATAACCCTAATTTCAGTAACAGCGAGAGTGGTAAGAAGGAGACAAC 230
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 184 AGAGAGTAATAATAATAACCCTAATTTCAGTAACAGCGAGAGTGGTAAGAAGGAGACAAC 243
Query 231 AGATAGTGGTCAGTCTTGGTCTTCTTCATCTTCAAAACCGTCAGTCTTGGGGAGAGGACA 290
||||||||||||||||||||| || || ||||||||||| || |||||||||||||||||
Sbjct 244 AGATAGTGGTCAGTCTTGGTCCTCGTCGTCTTCAAAACCATCGGTCTTGGGGAGAGGACA 303
Query 291 TTGGAGACCAGCTGAAGATGTTAAACTCAAAGAGCTTGTCTCCATTTACGGTCCACAGAA 350
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 304 TTGGAGACCAGCTGAAGATGTTAAACTCAAAGAGCTTGTCTCCATTTACGGCCCACAAAA 363
Query 351 CTGGAACCTCATAGCTGAAAAGCTTCAAGGAAGATCTGGAAAAAGCTGTAGACTACGATG 410
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 364 CTGGAACCTCATAGCTGAAAAGCTTCAAGGAAGATCTGGGAAGAGCTGTAGACTACGATG 423
Query 411 GTTTAACCAATTGGACCCGAGGATAAACCGAAGAGCTTTCACGGAGGAAGAAGAGGAGAG 470
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 424 GTTTAACCAATTGGACCCGAGGATAAACCGAAGAGCTTTCACAGAAGAAGAAGAGGAGAG 483
Query 471 GCTGATGCAAGCACATAGGCTTTATGGTAACAAATGGGCAATGATTGCGAGGCTTTTCCC 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 484 GCTGATGCAAGCACATAGGCTTTATGGTAACAAATGGGCAATGATTGCGAGGCTTTTCCC 543
Query 531 TGGAAGGACGGATAATTCTGTCAAGAACCATTGGCATGTTGTCATGGCTCCTAAGTATAG 590
||| || || |||||||| || |||||||||||||||||||||||||||| |||||||||
Sbjct 544 TGGTAGAACTGATAATTCAGTGAAGAACCATTGGCATGTTGTCATGGCTCGTAAGTATAG 603
Query 591 AGAACACTCTTCTGCTTATCGTAGGAGGAAGCTTATGAGTAATAATCCACTTAAACCTCA 650
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 604 AGAACACTCTTCTGCTTACCGTAGGAGAAAGCTTATGAGTAATAATCCACTTAAACCTCA 663
Query 651 TCTCACTGATAATCATCATCCTAACCCTAACCCTAATTACCACTCTTTTATCTCCACTAA 710
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 664 CCTCACCAATAATCATCATCCTAACCCTAACCCTAATTACCACTCTTTTATCTCCACTAA 723
Query 711 TCATTACTTCGCTCAGCCTTTCCCCGAGTTTAATTTGACTCATCACCTGGTTAATAATGC 770
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 724 TCATTACTTCGCTCAGCCTTTCCCCGAGTTTAATTTGACTCATCACCTGGTTAATAATGC 783
Query 771 CCCTATCACGAGTGACCATAACCAGCTTGTTTTGCCTTTCCATTGCTTTCAAGGTTATGA 830
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 784 CCCTATCACGAGTGACCATAACCAGCTTGTGTTGCCTTTCCATTGCTTTCAAGGTTATGA 843
Query 831 GAGCAATGAACCTCCGATGGTTGTGAGTATGTTTGGCAACCAAATGATGGTCGGCGATAA 890
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 844 GAACAATGAACCTCCGATGGTTGTGAGTATGTTTGGCAACCAAATGATGGTCGGCGATAA 903
Query 891 TGTAGGTGACACGTCAGACGCGTTATGCAATTTTCCGTACATTGACCCTAGGAGCCAAGA 950
|| |||| |||||||||||||||||||||| ||||| ||||||||||||| | ||||||
Sbjct 904 CGTTGGTGCCACGTCAGACGCGTTATGCAATATTCCGCACATTGACCCTAGTAACCAAGA 963
Query 951 GAAAGCGGAACCAAATGAAGCAATGCATTTGATCGGAATGGAAGCGGTAGATGAGGAGGT 1010
|||| |||| |||||||| |||||||||| |||||||||||| |||||||||||||||||
Sbjct 964 GAAACCGGAGCCAAATGATGCAATGCATTGGATCGGAATGGACGCGGTAGATGAGGAGGT 1023
Query 1011 GGTCGAGAAGGCTAAGCAGCAACCACATTTTTTCGATTTTCTTGGCTTGGGGACTGCGTG 1070
| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1024 GTTCGAAAAGGCTAAGCAGCAACCACATTTTTTCGATTTTCTTGGCTTGGGGACGGCGTG 1083
Query 1071 A 1071
|
Sbjct 1084 A 1084
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52459569525
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5