BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg335759

Length=552
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G55960.1 | Symbols:  | Haloacid dehalogenase-like hydrolase ...   255    2e-67
  AT3G07860.1 | Symbols:  | Ubiquitin-like superfamily protein | ...   113    1e-24


> AT3G55960.1 | Symbols:  | Haloacid dehalogenase-like hydrolase 
(HAD) superfamily protein | chr3:20760457-20763033 REVERSE 
LENGTH=1399
Length=1399

 Score =  255 bits (138),  Expect = 2e-67
 Identities = 188/210 (90%), Gaps = 12/210 (6%)
 Strand=Plus/Plus

Query  1    ATGGCCGAGTTGACTCATGCCGATGTTGTTTACTCTCCTCGTTCGTTTCAAGTATGGAAG  60
            ||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||
Sbjct  142  ATGGCCGAGTTGACTCAGGCCGATGTTGTATACTCTCCTCGTTCGTTTCAAGTGTGGAAG  201

Query  61   ACTCTGGTGAACTGGCTTGCTTTTTTCTATCAGA----TC--C---T--TT-GTGCAGTT  108
            ||| ||||||||||||| ||||||||||||||||    ||  |   |  || |||| |||
Sbjct  202  ACTTTGGTGAACTGGCTCGCTTTTTTCTATCAGATCTTTCTTCAGATCCTTCGTGCCGTT  261

Query  109  GGTTACCATCCTCTTCTCTCTTCTTCTGCTAAAGCCTCCGCTGATGGGTTCAAACCTTTG  168
            ||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct  262  GGTTATCATCCTCTTCTCTCTTCTTCTGCTAAAGCCTCCGCTGATGGTTTTAAACCTTTG  321

Query  169  CCTGCTATTGAGTTGCTTGATAGGGCTTCC  198
            || |||||||||||||||||||||||||||
Sbjct  322  CCGGCTATTGAGTTGCTTGATAGGGCTTCC  351


> AT3G07860.1 | Symbols:  | Ubiquitin-like superfamily protein 
| chr3:2507880-2509509 FORWARD LENGTH=884
Length=884

 Score =  113 bits (61),  Expect = 1e-24
 Identities = 67/70 (96%), Gaps = 0/70 (0%)
 Strand=Plus/Plus

Query  362  GTGACCTTCATGTCATATGTGATGAAGAAGGGTCGAGGAAGACACTCAAAGAGGAAGAAG  421
            ||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  415  GTGACTTTCATGCCATATGTGATGAAGAAGGGTCGAGGAAGACACTCCAAGAGGAAGAAG  474

Query  422  CATCGTCTCT  431
            ||||||||||
Sbjct  475  CATCGTCTCT  484


 Score = 99.0 bits (53),  Expect = 4e-20
 Identities = 60/63 (95%), Gaps = 2/63 (3%)
 Strand=Plus/Plus

Query  302  GATGTTGCGGTCATGAATTCAGCTACTTTGAAAGA-CTTGAAGCTTTTGATCAAGAAGAA  360
            ||||| ||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct  208  GATGTGGCGGTCATGAATTCAGCTACTTTGAAAGATCT-GAAGCTTTTGATCAAGAAGAA  266

Query  361  AGT  363
            |||
Sbjct  267  AGT  269



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26473395469


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5