BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg335795
Length=693
Score E
Sequences producing significant alignments: (Bits) Value
AT1G25520.1 | Symbols: | Uncharacterized protein family (UPF00... 1153 0.0
> AT1G25520.1 | Symbols: | Uncharacterized protein family (UPF0016)
| chr1:8962125-8964564 FORWARD LENGTH=1184
Length=1184
Score = 1153 bits (624), Expect = 0.0
Identities = 666/687 (97%), Gaps = 0/687 (0%)
Strand=Plus/Plus
Query 1 ATGAGCTCGGTTTTACAGGGTTTTACGAAGTCACTCGCTATGACGTTTGTATCGGAGATT 60
|||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 200 ATGAGCTCGGTTTTGCAGGGTTTTACGAAGTCACTTGCTATGACCTTTGTATCGGAGATT 259
Query 61 GGTGACAAGACGTTTTTCGCTGCAGCTATTTTGGCTATGCGTTATCCTAGGAGACTTGTG 120
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 260 GGTGACAAGACGTTTTTCGCTGCAGCAATTTTGGCTATGCGTTATCCTAGGAGACTTGTG 319
Query 121 TTGGCTGGTTGTCTATCTGCCCTGATTGTCATGACTATCCTCTCTGCTACTCTTGGATGG 180
|||||||||||| |||| || |||||||| ||||||||||||||||||||||||||||||
Sbjct 320 TTGGCTGGTTGTTTATCGGCTCTGATTGTTATGACTATCCTCTCTGCTACTCTTGGATGG 379
Query 181 GCTGCTCCAAATCTGATCTCTCGCAAATGGACTCATCACATAACAACATTGTTGTTCTTC 240
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 380 GCTGCTCCTAATCTGATCTCTCGCAAATGGACTCATCACATAACAACATTGTTGTTCTTT 439
Query 241 GGTTTTGGGCTATGGTCTTTGTGGGACGGTTTCAAAGAAGGAGGAGGGGGTTCGGAAGAA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 440 GGTTTTGGGCTATGGTCTTTGTGGGACGGTTTCAAAGAAGGAGGAGGGGGTTCGGAAGAA 499
Query 301 TTGGCTGGAGTCGAAGCAGAACTGGATGCTGATTTGAAGGCTAATGGTAAATCTCCAAAA 360
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 500 TTGGCTGAAGTCGAAGCAGAACTGGATGCTGATTTGAAGGCTAATGGTAAATCTCCAAAA 559
Query 361 GACAGTAGTAAGATTGAAGATGAAAACAAAAAGCAGAAAAGGGCGTTCCTCACGCAATTC 420
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 560 GACAGTAGTAAGAGAGAAGATGAAAACAAAAAGCAGAATAGGGCGTTCCTCACGCAATTT 619
Query 421 TTCTCTCCAATTTTTCTTAAGGCATTTTCGATTAATTTCTTTGGAGAATGGGGTGACAAG 480
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 620 TTCTCTCCAATTTTTCTCAAGGCTTTTTCGATTAATTTCTTTGGAGAATGGGGTGACAAG 679
Query 481 AGTCAGCTTGCTACAATTGGTTTGGCTGCAGATGAAAATCCATTTGGGGTGGTCCTTGGT 540
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 680 AGTCAGCTTGCTACAATTGGTTTAGCTGCAGATGAAAATCCATTTGGGGTGGTCCTTGGT 739
Query 541 GGAGTTGTGGCACAGTTTTTGTGCACCACTGCTGCTGTAATTGGAGGAAAGAGCTTAGCA 600
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 740 GGAGTTGTGGCACAGTTTTTGTGCACCACTGCTGCTGTAATTGGAGGAAAGAGCTTAGCG 799
Query 601 TCTCAAATATCCGAAAGAATAGTTGCTCTTTCTGGTGGAATGCTTTTCATCATTTTTGGC 660
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 800 TCTCAAATTTCCGAAAGAATAGTGGCTCTTTCTGGTGGAATGCTTTTCATCATTTTTGGC 859
Query 661 ATCCAATCGTATCTTACTTCTGTTGAG 687
|||||||||||||||||||||||||||
Sbjct 860 ATCCAATCGTATCTTACTTCTGTTGAG 886
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33556410196
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5