BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg335836

Length=579
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G24620.1 | Symbols:  | EF hand calcium-binding protein famil...   963    0.0  


> AT1G24620.1 | Symbols:  | EF hand calcium-binding protein family 
| chr1:8723712-8724459 REVERSE LENGTH=748
Length=748

 Score =  963 bits (521),  Expect = 0.0
 Identities = 545/557 (98%), Gaps = 0/557 (0%)
 Strand=Plus/Plus

Query  1    ATGTTCAACAAAAACAAAGGATCCAACGGTGGTTCATCTTCCCATGGCGGCATCGGAGCT  60
            ||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||||
Sbjct  7    ATGTTCAACAAAAACCAAGGATCCAACGGTGGTTCATCTTCCAATGTCGGCATCGGAGCT  66

Query  61   GATTCACCTTACCTTCAAAAGGCACGTTCAGGCAAAACAGAGATCAGAGAACTCGAAGCA  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  67   GATTCACCTTACCTTCAAAAGGCACGTTCAGGCAAAACAGAGATCAGAGAACTCGAAGCA  126

Query  121  GTTTTTAAAAAATTCGACGTGAATGGAGATGGTAAGATCTCGTCAAAGGAGCTTGGTGCA  180
            ||||| || |||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct  127  GTTTTCAAGAAATTCGACGTGAACGGAGATGGTAAGATCTCGTCAAAGGAACTTGGTGCA  186

Query  181  ATAATGGCGAGTCTAGGTCATGAGGTACCAGAAGAAGAACTAGAGAAAGCGATCACTGAG  240
            |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  187  ATAATGACGAGTCTAGGTCATGAGGTACCAGAAGAAGAACTAGAGAAAGCGATCACTGAG  246

Query  241  ATAGATCGTAAAGGAGATGGTTACATAAACTTTGAAGAGTTTGTGGAGCTGAACACGAAA  300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  247  ATAGATCGTAAAGGAGATGGTTACATAAACTTTGAAGAGTTTGTGGAGCTGAACACGAAA  306

Query  301  GGTATGGATCAGAATGATGTTTTGGAGAATCTGAAAGATGCGTTTTCGGTTTACGATATC  360
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  307  GGTATGGATCAAAATGATGTTTTGGAGAATCTGAAAGATGCGTTTTCGGTTTACGATATC  366

Query  361  GATGGGAATGGTTCGATTTCGGCTGAGGAGTTGCATGAGGTTTTGAGGAGTCTTGGTGAT  420
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  367  GATGGGAATGGTTCGATATCGGCTGAGGAGTTGCATGAGGTTTTGAGGAGTCTTGGTGAT  426

Query  421  GAATGTTCGATCGCCGAGTGTAGGAAGATGATTGGTGGTGTTGATAAAGATGGTGATGGT  480
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  427  GAATGTTCGATCGCGGAGTGTAGGAAGATGATTGGTGGTGTTGATAAAGATGGTGATGGT  486

Query  481  ACGATTGATTTTGAAGAGTTTAAGATTATGATGACTATGGGATCTAGACGTGATAATTTC  540
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  487  ACGATTGATTTTGAAGAGTTTAAGATTATGATGACTATGGGATCTAGACGTGATAATGTC  546

Query  541  ATGGGAGGTGGTCCGAG  557
            |||||||||||||||||
Sbjct  547  ATGGGAGGTGGTCCGAG  563



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27829717438


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5