BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg335856
Length=687
Score E
Sequences producing significant alignments: (Bits) Value
AT1G24370.1 | Symbols: | transposable element gene | chr1:8643... 656 0.0
AT1G24388.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 219 4e-56
> AT1G24370.1 | Symbols: | transposable element gene | chr1:8643761-8645626
REVERSE LENGTH=1242
Length=1242
Score = 656 bits (355), Expect = 0.0
Identities = 418/448 (93%), Gaps = 5/448 (1%)
Strand=Plus/Plus
Query 244 GGGGAAACCACCATTGATGAAATCAAGAGATGCAGCAGCAGCTTGTACAAAAACTTCTCC 303
|||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 796 GGGGAAACCACCATAGATGTAATCAAGAGATGCAGCAGCAGCTTGTACAAAAACTTCTCC 855
Query 304 CCCATCGATACCATGCCTGAGTGGCCCCCAGAGAATCCTTTTGAACATTCAAAGCTGCTG 363
||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 856 CCCATAGATACCATGCTTGACTGGCCCCCAGAGAATCCTTTTGAACATTCAAAGCTGTTG 915
Query 364 AA-CAGTTATGAGCTGC---AAGACAATGACTGGATTCGTCTCTACTTGGAACTTGCAGT 419
|| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 916 AATTA-TTATGAGCTGCAAGAAGACAATGACTGGATTCGTCTCTACTTGGAACTTGCAGT 974
Query 420 TGCCACGACTAATAGGGGCACCGTTACAGATCATGATGATCTGTCCAACTTGATGATTGT 479
|||||| ||||||||||||||| ||| |||| |||||| ||||||||||||| |||| |
Sbjct 975 TGCCACCACTAATAGGGGCACCATTAGGGATCTTGATGACCTGTCCAACTTGAAGATTAT 1034
Query 480 CCAAGTGGCTATAGATACTACTCCCCAAGATGTGGATTTGGTATTAAACCGCACAAATTT 539
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 1035 CCAAGTGGCTATAGATACTACTCCCCAAGATGTGGATTTGGTATTCAACCGCACATATTT 1094
Query 540 TGCAATTGTCTACATACGGTACAAGGACTCGTGTGAGGCTCGAGTTGGTAAGGATGTTGA 599
||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1095 TGCAATTGTCTACATACAGTACAAGGACTCGTGCGAGGCTCGAGTTGGTAAGGATGTTGA 1154
Query 600 TCGCGTAGCTATAGTCAGAAGAGCTTTCCATGAGCAGCTGGGATGCTTCAGTCTTGTGGG 659
|||||||||||||||||||||||| ||| ||||||||| |||||||||||||||||||||
Sbjct 1155 TCGCGTAGCTATAGTCAGAAGAGCCTTCGATGAGCAGCGGGGATGCTTCAGTCTTGTGGG 1214
Query 660 CAAGACTCTGAGTTTACCAAAAGAGTGA 687
||||||||| || || ||||||||||||
Sbjct 1215 CAAGACTCTAAGATTGCCAAAAGAGTGA 1242
> AT1G24388.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; BEST Arabidopsis
thaliana protein match is: unknown protein (TAIR:AT4G17700.1);
Has 30201 Blast hits to 17322 proteins in 780 species:
Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422;
Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source:
NCBI BLink). | chr1:8648099-8648694 REVERSE LENGTH=414
Length=414
Score = 219 bits (118), Expect = 4e-56
Identities = 162/181 (90%), Gaps = 11/181 (6%)
Strand=Plus/Plus
Query 75 GAAAAACTTAGAGCTCAGTAGCGTAAAGAAATACAACAAGTCCTCGCATTCTGCTGCTTC 134
||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 204 GAAAAACTTAGAGCTCAGTAGCGTAAAGAAATACAACCAGTCCACGCATTCTGCTGCTTG 263
Query 135 CTCTTACCACATTACTTTGGACGCCAT----C-----GCTCTTCAACCTTTTGAGACTAC 185
|||||||||||||||||||||| |||| | |||||||||| |||||||||| |
Sbjct 264 CTCTTACCACATTACTTTGGACACCATTGGTCTCACCGCTCTTCAACATTTTGAGACTTC 323
Query 186 TGTTTATGAAATATCCTATGGCAAATTAGCTTTGA-CGTGCCGAATTGCTAGACCTCTAG 244
|||||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||
Sbjct 324 AGTTTATGAAATATCCTCTGGCAAATTAGCTTT-ATCGTGCCGAATTGCTAGACCTCTAG 382
Query 245 G 245
|
Sbjct 383 G 383
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33255005314
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5