BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg335902
Length=1245
Score E
Sequences producing significant alignments: (Bits) Value
AT1G27610.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 143 4e-33
> AT1G27610.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 11 plant structures;
EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis,
4 leaf senescence stage, petal differentiation and expansion
stage, D bilateral stage; Has 1 Blast hits to 1 proteins
in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi -
0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink). | chr1:9607111-9607577 REVERSE LENGTH=345
Length=345
Score = 143 bits (77), Expect = 4e-33
Identities = 162/200 (81%), Gaps = 17/200 (9%)
Strand=Plus/Plus
Query 245 GCAACTATCAGTCC-GAAGACGATCCCGATAAACCCTTCTCCACTGAGGATGAGAAGTGG 303
|||||||||| || ||||| ||| || | ||||||||||||||| ||||||||||||||
Sbjct 28 GCAACTATCA-ACCAGAAGAAGATTCCTACAAACCCTTCTCCACTAAGGATGAGAAGTGG 86
Query 304 ATCCGCGAGGAATTCAGCAAAGAA-AA-A-GATCCTAAGAAGCTCTTCGACCTTTACAAG 360
|||||||||||||||| |||| || || | |||||||||||||||||||| |||| ||||
Sbjct 87 ATCCGCGAGGAATTCAACAAAAAAGAAGAAGATCCTAAGAAGCTCTTCGAGCTTTTCAAG 146
Query 361 G----CTTCGGTTTACCTTGGATTCCCACA-CCTACGT-GATCTGATCAGAACGATCGG- 413
| |||| | ||||||||||| ||| || | || | | ||||||||| ||| ||
Sbjct 147 GTATGCTTCAGAGTACCTTGGATTTGTACATCCAA-GTCGTT-TGATCAGAAGGAT-GGA 203
Query 414 GATGGAGAACGAG-ATATTC 432
|| | ||||| || ||||||
Sbjct 204 GACGAAGAAC-AGTATATTC 222
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61194464355
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5