BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg335913
Length=624
Score E
Sequences producing significant alignments: (Bits) Value
AT1G27710.1 | Symbols: | Glycine-rich protein family | chr1:96... 706 0.0
> AT1G27710.1 | Symbols: | Glycine-rich protein family | chr1:9642474-9643352
FORWARD LENGTH=879
Length=879
Score = 706 bits (382), Expect = 0.0
Identities = 569/652 (87%), Gaps = 41/652 (6%)
Strand=Plus/Plus
Query 1 ATGGCTAGAGTGATGTTGTGGTTTCTTGTTTCCTTGTATCTATGCCTCATTGGTCATATG 60
|||||||||||||| ||||||||||||||||||| |||||| || ||||| |||||||||
Sbjct 77 ATGGCTAGAGTGATCTTGTGGTTTCTTGTTTCCTCGTATCTTTGTCTCATCGGTCATATG 136
Query 61 ATTGCCGAGGCTGCAAGAGAAGGTGCGTCCATGAAGAAGGTAGCCCACTCCACTGAGATT 120
|||||||||||||||||||||||||| ||||||| ||||| ||| ||||||| || ||||
Sbjct 137 ATTGCCGAGGCTGCAAGAGAAGGTGCCTCCATGAGGAAGGAAGCACACTCCAGTGGGATT 196
Query 121 GGAAGAGAAAGT--GCGTCCATGAGGAATCAAGCACGCTCCACTGAGATTGGAAAAGAAA 178
|||||||||||| || | |||||||||| || || ||||||||||||||||| |||||
Sbjct 197 GGAAGAGAAAGTAAGC-T-CATGAGGAATGAAAAACACTCCACTGAGATTGGAAGAGAAA 254
Query 179 GTGCGTCCATGATGAATCAAGCACGCTCCAGTGAGATTGGACGAGAAAGTAAGCTCATGA 238
|||||||||||| |||| |||||||||| |||||||||||| |||| |||||||||||||
Sbjct 255 GTGCGTCCATGAGGAATAAAGCACGCTCGAGTGAGATTGGAAGAGAGAGTAAGCTCATGA 314
Query 239 GGAATGGACCACACTCCAGTGCTCAGATTGGAAAGAGTATGGGACACGTAACCGGATTTA 298
|||||| | |||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 315 GGAATGAAGCACACTCCAGTG---AGATTGGAAAGAGTATCCGACACGTAACCGGATTTA 371
Query 299 AGGGTGAACTCACAGCtggtggctatggcggtggaggcccgggctatggtggtggtggtg 358
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 372 AGGGTGAACTCACAGCTGGTGGCTACGGCGGTGGAGGCCCGGGATATGGTGGTGGTGG-- 429
Query 359 gatacgggccaggtggtggcggtggtggtgttgtaatcggtggtggatttggcggtggtg 418
|||||| |||||||| ||||||||||||||||||||||||||||||||||| || ||||
Sbjct 430 -ATACGGTCCAGGTGGCGGCGGTGGTGGTGTTGTAATCGGTGGTGGATTTGGTGGAGGTG 488
Query 419 gtgggtatgggtccggtggtggtttgggttgggatggaggcaacggaggtggt---ccgg 475
|||||||| || ||||||||||||||||||||||||||||||||||||||| || |
Sbjct 489 CCGGGTATGGTTCAGGTGGTGGTTTGGGTTGGGATGGAGGCAACGGAGGTGGTGGTCCAG 548
Query 476 gatacgggtcaggtgg------tattggtggtggagtca--tcattggcggtgg--t--- 522
|||||||||||||||| |||||||||||||| | | ||||| ||||| |
Sbjct 549 GATACGGGTCAGGTGGAGGAGGTATTGGTGGTGGAGG-AGGT-ATTGGTGGTGGAGTCAT 606
Query 523 ----gg---tggtggtggatg-tg-gc-ggttcatgcggcggaggcggtggtggtggtgg 572
|| |||||||||| | || | ||||||||| |||||||||||||||||||
Sbjct 607 CATTGGCGGTGGTGGTGGAGGATGCGGAGGTTCATGCAGCGGAGGCGGTGGTGGTGG--- 663
Query 573 aggaggatatggaCACGGCGGAGTCATCACGAAGGGATCAGGCAAAAACTAG 624
|||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 664 AGGAGGATATGGACACGGCGGAGTCAGCACGAAGGGATCAGGCAAAAACTAG 715
Score = 145 bits (78), Expect = 6e-34
Identities = 104/116 (90%), Gaps = 4/116 (3%)
Strand=Plus/Plus
Query 106 CACTCCACTGAGATTGGAAGAGAAAGTGCGTCCATGAGGAATCAAGCACGCTCCACTGAG 165
|||||||||||||||||||||||||||||||||||||||||| |||||||||| | ||||
Sbjct 230 CACTCCACTGAGATTGGAAGAGAAAGTGCGTCCATGAGGAATAAAGCACGCTCGAGTGAG 289
Query 166 ATTGGAAAAGAAAGT--GCGTCCATGATGAATCAAGCACGCTCCAGTGAGATTGGA 219
||||||| ||| ||| || || |||| |||| |||||| ||||||||||||||||
Sbjct 290 ATTGGAAGAGAGAGTAAGC-TC-ATGAGGAATGAAGCACACTCCAGTGAGATTGGA 343
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30090254053
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5