BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg335959
Length=1047
Score E
Sequences producing significant alignments: (Bits) Value
AT1G28220.1 | Symbols: ATPUP3, PUP3 | purine permease 3 | chr1:... 1633 0.0
> AT1G28220.1 | Symbols: ATPUP3, PUP3 | purine permease 3 | chr1:9860303-9861434
REVERSE LENGTH=1056
Length=1056
Score = 1633 bits (884), Expect = 0.0
Identities = 989/1040 (95%), Gaps = 6/1040 (1%)
Strand=Plus/Plus
Query 1 ATGGTGAAGGTTCTTGTGATCATAAACTGCATAATTCTAGCCATAGGAAACTGTGGAGGT 60
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGTGAAGGCTCTTGTGATCATAAACTGCATAATTCTAGCCATAGGAAACTGTGGAGGT 60
Query 61 CCTTTGATTATGCGTCTCTACTTCAACAATGGTGGTAAAAGGATTTGGTTCTCTACTTTT 120
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 61 CCTTTGATTATGCGTCTCTACTTCAACAATGGCGGTAAAAGGATTTGGTTCTCTACGTTT 120
Query 121 CTTGAAACTGCTGGCTTTCCAGTTATCTTCATCCCAT-TGCTCTTCTCTTACATTGCCCG 179
||||||||||| |||||||| ||||||||||| || | ||||||||||||||||| ||||
Sbjct 121 CTTGAAACTGCAGGCTTTCCTGTTATCTTCATTCC-TCTGCTCTTCTCTTACATTACCCG 179
Query 180 GCGCAGAAGCAACAATGTGGGTGAT-GATACAAGTTTCTTTCTTATCAAACCGCGTCTTC 238
||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 180 GCGCAGAAGCAACAATGTGGGTGATAG-TACAAGTTTCTTTCTTATCAAACCGCGTCTTC 238
Query 239 TTATCGTGGCTGTT-TTCATAGGCATTCTTTCAGGCTTTGATAACTACTTGTATGCATAT 297
|||||| |||||| || |||||||||| ||||| ||||||||||||||||||||||||
Sbjct 239 TTATCGCCGCTGTTATTG-TAGGCATTCTCTCAGGGTTTGATAACTACTTGTATGCATAT 297
Query 298 GGTATAGCTTATCTCCCAGTTTCAACAGCTGCTCTCATCATTGCTTCACAGTTAGCTTTC 357
|||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 298 GGTATAGCTTATCTTCCAGTTTCTACAGCTGCTCTTATCATTGCTTCACAGTTAGCTTTT 357
Query 358 ATAGCTATCTTCTCATTCTTCATGGTTAAACATAAGTTCACTCCTTTTACCATTAATGCT 417
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 358 ATAGCTATCTTCTCATTCTTCATGGTTAAACATAAGTTCACTCCTTTTACCATCAATGCT 417
Query 418 GTTGTGTTGTTGACCGTTGGAGCTGCGGTTTTGGGAATGCATACCGAAACTGATAAGCCG 477
|||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 418 GTTGTGTTGTTGACTGTTGGTGCTGCGGTTTTGGGAATGCATACCGAAACTGATAAGCCA 477
Query 478 GTTCATGAGACTCATAAGCAGTACATTATTGGGTTCTTGATGACTGTAGCTGCAGCTGTT 537
|||||||||||||| ||||||||||| | ||| |||||||| |||||||| |||||||||
Sbjct 478 GTTCATGAGACTCACAAGCAGTACATAACTGGTTTCTTGATTACTGTAGCAGCAGCTGTT 537
Query 538 ATGTATGCTTTTATCTTGCCATTAGTGGAACTTGCTTATCAGAAAGCTAGGCAACCCATG 597
||||||||||| |||||||||||||||||||||||||| |||||||||| |||| |||||
Sbjct 538 ATGTATGCTTTCATCTTGCCATTAGTGGAACTTGCTTACCAGAAAGCTAAGCAAACCATG 597
Query 598 AGCTATACTCTCGTGCTCGAGTTCCAGTTGATTTTGTGTTTCCTTGCTTCTATTGTCAGC 657
|||||||| || ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 598 AGCTATACCCTTGTGCTCGAGTTCCAGTTGATTTTGTGTCTCCTTGCTTCTATTGTCAGC 657
Query 658 GTCATCGGTATGTTCATAGCTGGTGATTTCAAGGCCTTACCAAAAGAAGCAAGAGAGTTC 717
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 GTCATCGGTATGTTCATCGCTGGTGATTTCAAGGCCTTACCAAAAGAAGCAAGAGAGTTC 717
Query 718 AAGCTTGGAGAGGCACTGTTCTATGTGGTGGCTGTGTTTTCAGCCATCATATGGCAAGGC 777
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 AAGCTTGGAGAGGCATTGTTCTATGTGGTGGCTGTGTTTTCAGCCATCATATGGCAAGGC 777
Query 778 TTCTTCTTGGGAGCCATTGGATTAATCTTTTGCACATCGTCTCTCGTCTCGGGAATTATG 837
||||||||||||||||||||||||||||| | ||||||||||||||||||||| ||||||
Sbjct 778 TTCTTCTTGGGAGCCATTGGATTAATCTTCTCCACATCGTCTCTCGTCTCGGGTATTATG 837
Query 838 ATATCAGTGCTTTTGCCAATCACAGAGGTTTTAGCTGTTATATTCTACCATGAAAAGTTT 897
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 838 ATATCAGTGCTTTTGCCAATTACAGAGGTTTTAGCTGTTATATTCTACCATGAAAAGTTT 897
Query 898 CAAGCAGAGAAGGGACTTTCTCTAGCTCTCTCCCTTTGGGGTTTTGTCTCTTACTTTTAT 957
||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 898 CAAGCTGAGAAGGGACTTTCTCTTGCTCTCTCCCTTTGGGGCTTTGTCTCTTACTTTTAT 957
Query 958 GGTGAGATAAAGTCTGGCAAGGATAAAAAGAGAATTCAGCAGGAGGAGAGTCCGGAGACA 1017
|||||||||||||||||| ||||||||| ||||||||||||||||||||||| |||||||
Sbjct 958 GGTGAGATAAAGTCTGGCGAGGATAAAAGGAGAATTCAGCAGGAGGAGAGTCAGGAGACA 1017
Query 1018 GAACAATCTTCTTTGTCAAG 1037
||||||||||||||||||||
Sbjct 1018 GAACAATCTTCTTTGTCAAG 1037
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51339298234
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5