BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg336003
Length=810
Score E
Sequences producing significant alignments: (Bits) Value
AT1G28960.1 | Symbols: ATNUDT15, ATNUDX15, NUDX15 | nudix hydro... 1266 0.0
> AT1G28960.1 | Symbols: ATNUDT15, ATNUDX15, NUDX15 | nudix hydrolase
homolog 15 | chr1:10109618-10111660 REVERSE LENGTH=1452
Length=1452
Score = 1266 bits (685), Expect = 0.0
Identities = 772/814 (95%), Gaps = 5/814 (1%)
Strand=Plus/Plus
Query 1 ATGGAGCCTGCGATATCA---ACAGCGACTTCTTCTTTCGGTGGTGGGTCTTCTCGACTC 57
||||||||||||||| || || | ||||||||||||||||||| |||||||| |||
Sbjct 123 ATGGAGCCTGCGATAACAGCGACTTCTTCTTCTTCTTTCGGTGGTGGCTCTTCTCGTCTC 182
Query 58 TCCGCTTTGGCCCAGCAACTTCGCCGATACAAGCCGCCACCTTCTTCATCCTTCGATGAC 117
||||||| |||||||||||||||| ||||||||| |||||||||||||| |||||||||
Sbjct 183 GCCGCTTTAGCCCAGCAACTTCGCCAATACAAGCCCCCACCTTCTTCATCGTTCGATGAC 242
Query 118 GCCGAGGAGATGCAGACAGATCAGGAGACCGCCGGGAAAGTGGTTTCTCAGGTTGGATTT 177
||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||
Sbjct 243 TCCGAGGAGATGCAGACAGATCAGGAGACCGCTGGGAAAGTCGTTTCTCAGGTTGGGTTT 302
Query 178 CAGGAATCTATTGCTCCGGTTTCGAAAGACCCTGAGAGGTTTAAACCCAAGAGAGCTGCT 237
||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |||
Sbjct 303 CAGGAATCTATTGCTCCTCTTTCGAAAGACCCTGATAGGTTTAAACCCAAGAGAGCCGCT 362
Query 238 GTGTTGATCTGTATCTTTGAAGGAGATGATGGTGATTTGCGTGTTATCCTTACTAAGAGA 297
|||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 363 GTGTTGATCTGTCTCTTTGAAGGAGATGATGGTGATTTGCGTGTTATTCTTACTAAGAGA 422
Query 298 TCTTCCAAATTGTCTACTCACTCAGGAGAAGTTTCACTGCCAGGTGGGAAAGCGGAGGAG 357
||||||||||||||||||||||| |||||||||||| |||||||||| ||||||||||||
Sbjct 423 TCTTCCAAATTGTCTACTCACTCTGGAGAAGTTTCATTGCCAGGTGGTAAAGCGGAGGAG 482
Query 358 GATGATAAAGATGATGGGATGACTGCAACCAGAGAGGCTGAGGAAGAGATTGGATTGGAC 417
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 483 GATGATAAAGATGATGGGATGACTGCTACCAGAGAGGCTGAGGAAGAGATTGGATTGGAC 542
Query 418 CCTTCTCTTGTTGATGTTGTGACTTCTCTCGAACCATTTCTCTCTAAGCATCTGCTTAGA 477
|||||||||||||||||||| |||||||| ||||||||||| ||||||||||| ||||||
Sbjct 543 CCTTCTCTTGTTGATGTTGTTACTTCTCTTGAACCATTTCTGTCTAAGCATCTTCTTAGA 602
Query 478 GTAATTCCTGTGATAGGAATCTTGAGGGACAAAACA-AAATTCAATCCGACACCAAATCC 536
||||||||||||||||| |||||||||||||||| | ||||||||||||| |||||||||
Sbjct 603 GTAATTCCTGTGATAGGCATCTTGAGGGACAAAA-ATAAATTCAATCCGATACCAAATCC 661
Query 537 TGGGGAAGTGGAAGATGTGTTTGATGCACCCTTGGAAATGTTCCTTAAGGATGAGAATCG 596
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 662 TGGGGAAGTGGAAGCTGTGTTTGATGCACCCTTGGAAATGTTCCTTAAGGATGAGAATCG 721
Query 597 AAGATCTGAAGAGAGAGAGTGGATGGGGGAAAAGTATTTGATCCACTACTTTGACTACAG 656
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 722 AAGATCTGAAGAGAGAGAGTGGATGGGTGAAAAGTATTTGATCCATTACTTTGACTACAG 781
Query 657 AACAGGAGATAAGGATTATATGATATGGGGTTTAACTGCTGGGATTTTGATCAGAGCTGC 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 782 AACAGGAGATAAGGATTATATGATATGGGGTTTAACTGCTGGGATTTTGATCAGAGCTGC 841
Query 717 ATCTGTGACTTATGAAAGACCACCTGCTTTTATCGAACAGTGCCCTAAGTTTAAGTACCC 776
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 842 ATCTGTGACTTATGAAAGACCACCTGCTTTTATCGAGCAGTGCCCGAAGTTTAAGTACCC 901
Query 777 TAAAATGGTAGAAAAACATACTTGTATGCCTTAA 810
||||||||||||||||||||||||||||||||||
Sbjct 902 TAAAATGGTAGAAAAACATACTTGTATGCCTTAA 935
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39433805395
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5