BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg336004
Length=840
Score E
Sequences producing significant alignments: (Bits) Value
AT1G29000.1 | Symbols: | Heavy metal transport/detoxification ... 1214 0.0
> AT1G29000.1 | Symbols: | Heavy metal transport/detoxification
superfamily protein | chr1:10113018-10114340 FORWARD LENGTH=864
Length=864
Score = 1214 bits (657), Expect = 0.0
Identities = 803/868 (93%), Gaps = 32/868 (4%)
Strand=Plus/Plus
Query 1 ATGGGTgaaaaagaagagaagaaagagaaagGCGAGGAAATCATCACGGCCGTTTACAAG 60
||||| || ||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1 ATGGGAGAGGAAGAAGAAAAGAAAGAGAAAGGCGATGAAATCATCACGGCCGTTTACAAG 60
Query 61 GTTCACCTTCACTGCCGGAAATGTGCATGCGACATCAAAAAGCCTCTCCTTCGATTCCAA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GTTCACCTTCACTGCCGGAAATGTGCATGCGACATCAAAAAGCCTCTCCTTCGATTCCAA 120
Query 121 GGGGTTCATAATGTGGACTTTGATTTGGAGAAGAATGAGATCAAAGTAAAAGGGAAAATA 180
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 121 GGGGTTCAAAATGTGGACTTTGATTTGGAGAAGAACGAGATCAAAGTAAAAGGGAAAATA 180
Query 181 GAAGTCGTGAAGATTCACAAGCAAATCGAGAAATGGAGCAAGAAAAAAGTTGAGCTCATC 240
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 181 GAAGTCGTGAAGATTCACAAACAAATCGAGAAATGGAGCAAGAAAAAAGTTGAGCTCATC 240
Query 241 GCTCCCAAACCTTCTGAGGTTAAGAAAACCACCACTACAACCACAACAACTACTTCTGTG 300
|||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||
Sbjct 241 TCTCCCAAACCTTCTGAGGTTAAGAAAACCACCACTACAAC-A-A-CAACTACTTCTGTG 297
Query 301 GAAGAAAAGAAGACCACCGAGGTCAAAAAGGAAGTTATTCGTACGACAGTACTAAAGGTA 360
| ||||||||||||||||||| | |||||||| |||||||||||||||||||||||||||
Sbjct 298 GTAGAAAAGAAGACCACCGAGATTAAAAAGGACGTTATTCGTACGACAGTACTAAAGGTA 357
Query 361 CACATTCATTGCCCACAATGTGACAAAGATCTTCAGCACAAACTCTTGAAACACAAAGCT 420
|||||||||||| |||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 358 CACATTCATTGCGCACAGTGTGACAAAGATCTTCAGCACAAACTCTTGAAACATAAAGCT 417
Query 421 ATTCACATCGTGAAAACTGATACAAAGGCGCAAACCCTAACGGTACAAGGGACTATAGA- 479
|| ||||| || ||||| ||||||||||||||||| ||||||||||||||||| |||||
Sbjct 418 ATCCACATTGTCAAAACCGATACAAAGGCGCAAACTCTAACGGTACAAGGGACGATAGAA 477
Query 480 TACCGCAAAACTTTTAACCTATATAAAGAAGAAAGTTCACAAACATGCAGAGATCGTAAG 539
| |||||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 478 T-CCGCAAAACTCTTAGCCTATATAAAGAAGAAAGTTCACAAACATGCAGAGATCATAAG 536
Query 540 CTCAAAGACCgaagaagagaagaagaaggaagaagaggataagaagaagaaggaagaaga 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 CTCAAAGACCGAAGAAGAGAAGAAGAAGGAAGAAGAGGATAAGAAGAAGAAGGAAGAAGA 596
Query 600 g-a-a-gaagaa-a-g-aagacgagaagaagaaaga--a-gag--ga-gaa-gaaga--a 644
| | | |||||| | | |||| |||||||||||||| | ||| || ||| ||||| |
Sbjct 597 GGATAAGAAGAAGAAGGAAGATGAGAAGAAGAAAGAGGAAGAGAAGAAGAAAGAAGAGGA 656
Query 645 gaa---g--gaagga-g-aggaaaa--gaaagaagaagtaaaaatagaagTGAC--C-AA 692
||| | |||||| | || |||| |||||||||||||||| ||||||| || | ||
Sbjct 657 GAATAAGAAGAAGGAAGGAGAAAAAAAGAAAGAAGAAGTAAAAGTAGAAGTAACAACCAA 716
Query 693 AACGATTACTCAAGTTGTGGAATTTAAAGAGAAAGTAAAAGTTGAGGGCCAAAAAGATAA 752
||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||||
Sbjct 717 AACGATTACTCAAGTTGTGGAGTATAAAGAGATAGTAAAAGTTGAGGGCCAAAAAGATAA 776
Query 753 AGATGGAAACATACCTTACTTTGTCCACTACGTATACGCTCCACAATTGTTCAGTGATGA 812
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 AGATGGAAACATACCTTACTTTGTCCACTACGTATACGCTCCACAATTGTTCAGTGATGA 836
Query 813 AAACCCTAATGCTTGTTGCATTGTCTAG 840
|||||||||||||||| |||||||||||
Sbjct 837 AAACCCTAATGCTTGTCGCATTGTCTAG 864
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40940829805
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5