BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg336024
Length=771
Score E
Sequences producing significant alignments: (Bits) Value
AT3G51870.1 | Symbols: | Mitochondrial substrate carrier famil... 444 7e-124
AT1G29060.1 | Symbols: | Target SNARE coiled-coil domain prote... 204 1e-51
> AT3G51870.1 | Symbols: | Mitochondrial substrate carrier family
protein | chr3:19243950-19246936 FORWARD LENGTH=1499
Length=1499
Score = 444 bits (240), Expect = 7e-124
Identities = 276/294 (94%), Gaps = 0/294 (0%)
Strand=Plus/Plus
Query 476 CTGTTCTTTCGGCTGGTATCGCAACACTCACATGTTACCCTCTACAAACTGTGAGATGGC 535
||||||| || |||||||| |||||||| ||||||||||||||| | ||||||||| |||
Sbjct 879 CTGTTCTCTCAGCTGGTATTGCAACACTGACATGTTACCCTCTAGACACTGTGAGACGGC 938
Query 536 AAATGCAAATGAGAGGAACTCCATACAAATCAATTCCGGAAGCATTTGCTCGAATTATAG 595
|||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 939 AAATGCAAATGAGAGGAACTCCATACAAATCAATTCCGGAGGCATTTGCTGGAATTATAG 998
Query 596 ACCGTGATGGTCTTATAGGATTGTACCGCGGCTTTTTACCCAATGCATTGAAGACTCTAC 655
|||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 999 ACCGTGATGGGCTTATAGGCTTGTACCGCGGCTTTTTACCCAATGCATTGAAAACTCTAC 1058
Query 656 CAAACAGCAGTATTAGGCTTACAACCTTGGACATGGTAAAACGCCTTATCGCCACAAGTG 715
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 1059 CAAACAGCAGTATTAGGCTTACAACCTTCGACATGGTAAAGCGCCTTATCGCCACAAGTG 1118
Query 716 AGAAGCAGTTTCAAAAGATCAACGATGATAATGGGAATCGAGAACAAGCTCAAT 769
|||||||| |||||||||||| |||||||||| |||||||||| ||||||||||
Sbjct 1119 AGAAGCAGCTTCAAAAGATCAGCGATGATAATCGGAATCGAGACCAAGCTCAAT 1172
Score = 158 bits (85), Expect = 1e-37
Identities = 92/95 (97%), Gaps = 1/95 (1%)
Strand=Plus/Plus
Query 381 TCAGGTTGCTTTGAGTATGCTCCGTGATGAAGGAATCACATCTTTCTATTACGGTTCTAG 440
||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct 703 TCAGGTTGCTTTGAGTATGCTCCGTGATGAAGGAATCGCATCTTTCTATTACGG-TCTAG 761
Query 441 GACCTTCTCTAGTGGGGATAGCTCCATACATTGCT 475
|||||||||||||||||||||||||||| ||||||
Sbjct 762 GACCTTCTCTAGTGGGGATAGCTCCATATATTGCT 796
Score = 137 bits (74), Expect = 1e-31
Identities = 89/96 (93%), Gaps = 2/96 (2%)
Strand=Plus/Plus
Query 264 AGAG-TGCAATAACTTGTTCAAAGGTAAAGATGATCAGCTCTCAGTAATCTGGAAGACTT 322
|||| | ||| ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 543 AGAGTTACAAGAACTTGTTCAAAGGTAAAGATGATCAGCTCTCAGTAATC-GGAAGACTT 601
Query 323 GCGGCTGGTGCTTGTGCTGTCATGACATCTTCTTTG 358
|| |||||||||||||||| |||||||||| |||||
Sbjct 602 GCAGCTGGTGCTTGTGCTGGCATGACATCTACTTTG 637
> AT1G29060.1 | Symbols: | Target SNARE coiled-coil domain protein
| chr1:10147693-10149686 FORWARD LENGTH=796
Length=796
Score = 204 bits (110), Expect = 1e-51
Identities = 125/132 (95%), Gaps = 2/132 (2%)
Strand=Plus/Plus
Query 106 AGAGAAGGGCTTAGCACTAGAAATGCTTCAGGTTCAGAGGAAGTCCAGCTGAGGATTGAT 165
||||||||||| |||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 225 AGAGAAGGGCTAAGCACTAGAAATGCTTCAGGTTCAGAGGAAATTCAGCTGAGGATTGAT 284
Query 166 CCTATGCACTCTGACCTTGATGATGAGAT-CATAGGTCTCCATGGCCAGGTCAGGCAATT 224
||||||||||||||||| ||||||||||| | |||||||||||||||| |||||||||||
Sbjct 285 CCTATGCACTCTGACCTGGATGATGAGATTC-TAGGTCTCCATGGCCAAGTCAGGCAATT 343
Query 225 GAAAAATATTGC 236
||||||||||||
Sbjct 344 GAAAAATATTGC 355
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37474673662
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5