BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg336031
Length=780
Score E
Sequences producing significant alignments: (Bits) Value
AT1G29280.1 | Symbols: WRKY65, ATWRKY65 | WRKY DNA-binding prot... 1253 0.0
> AT1G29280.1 | Symbols: WRKY65, ATWRKY65 | WRKY DNA-binding protein
65 | chr1:10236367-10237467 FORWARD LENGTH=1002
Length=1002
Score = 1253 bits (678), Expect = 0.0
Identities = 746/780 (96%), Gaps = 0/780 (0%)
Strand=Plus/Plus
Query 1 ATGAAGCGAGGTCTAGAGATGGCGAGAAACTACAATGATCATGAAAGCAGTCAAGAAACC 60
||||||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||
Sbjct 223 ATGAAGCGAGGTCTAGATATGGCGAGAAGCTACAATGATCATGAAAGTAGTCAAGAAACC 282
Query 61 GGACCCGAATCACCAAATTCTTCAACCTTCAACGACATGAAAGCTCTTATCTCTTCTCAT 120
||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 283 GGACCCGAATCACCAAATTCTTCAACCTTTAACGGCATGAAAGCTCTTATCTCTTCTCAT 342
Query 121 TCACCTAAAAGAAGCAGGAGATCCATAGAGAAGAGAGTAGTGAACGTACCGATGAAAGAA 180
|| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 343 TCGCCTAAAAGAAGCAGGAGATCCGTAGAGAAGAGAGTAGTGAACGTACCGATGAAAGAA 402
Query 181 ATGGAAGGATCTCGGCACAAAGGTGACACAACTCCGCCGTCAGATTCATGGGCTTGGCGT 240
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 403 ATGGAAGGATCTCGGCACAAAGGGGACACAACTCCGCCCTCAGATTCATGGGCTTGGCGT 462
Query 241 AAGTACGGCCAAAAGCCCATTAAGGGATCTCCTTACCCTAGAGGTTATTACCGTTGTAGT 300
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 463 AAGTACGGCCAAAAGCCCATTAAGGGATCTCCATACCCTAGAGGTTATTACCGTTGTAGT 522
Query 301 AGCACAAAAGGTTGTCCGGCGAGGAAGCAAGTCGAGAGAAGCAGAGATGATCCAACGATG 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 523 AGCACAAAAGGTTGTCCGGCGAGGAAGCAAGTCGAGAGAAGCAGAGATGATCCAACGATG 582
Query 361 ATCCTCATCACTTACACTTCTGAGCATAACCATCCTTGGCCTCTCACTTCTTCCACAAGA 420
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 583 ATTCTCATCACTTACACTTCTGAGCATAACCATCCTTGGCCTCTCACTTCTTCCACAAGA 642
Query 421 AACGGGCCTAAACCCAAACCCGAGCCCAAACCTGAACCCGAGCCTGAGGTAGAGCCAGAG 480
|||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 643 AACGGGCCTAAACCTAAACCCGAGCCCAAACCCGAACCTGAGCCTGAGGTAGAGCCAGAG 702
Query 481 GCCGAGGAAGAGGATAACAAGTTTATGGTTCTTGGAAGGGAGATTGAAACAACGCCGTCT 540
|| ||||| |||||||| |||||||||||||||||||||| ||||||||| ||||| ||
Sbjct 703 GCGGAGGAGGAGGATAATAAGTTTATGGTTCTTGGAAGGGGGATTGAAACGACGCCATCA 762
Query 541 TGCGTCGACGAGTTCGCGTGGTTTACGGAGATGGAGACAACATCTTCGACCATTCTTGAG 600
|| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 763 TGTGTCGACGAGTTCGCATGGTTTACGGAGATGGAGACAACATCTTCGACGATTCTTGAG 822
Query 601 AGCCCGATTTTTTCGTCGGAGAAAAAGACGGCTGCCTCGGCGGCAGATGATGTGGCAGTG 660
||||||||||| |||||||||||||||||||||| ||||| ||| ||||| ||||| |||
Sbjct 823 AGCCCGATTTTCTCGTCGGAGAAAAAGACGGCTGTCTCGGGGGCTGATGACGTGGCGGTG 882
Query 661 TTCTTTCCGCTGGGAGAGGAAGATGAGTCTTTGTTCGCCGATCTCGGCGAGTTGCCGGAG 720
||||||||| ||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 883 TTCTTTCCGATGGGAGAAGAGGATGAGTCTTTGTTCGCCGATCTCGGCGAGTTGCCGGAG 942
Query 721 TGTTCGGTGGTGTTTCGTCACCGGAGTAGCGTAGTGGGGTCACAAGTTGAGATCTTTTGA 780
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 943 TGTTCTGTGGTGTTTCGTCACCGGAGTAGCGTAGTGGGGTCACAAGTTGAGATCTTTTGA 1002
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37926780985
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5