BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg336050

Length=936
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G29480.1 | Symbols:  | unknown protein; Has 20 Blast hits to...   429    2e-119


> AT1G29480.1 | Symbols:  | unknown protein; Has 20 Blast hits 
to 20 proteins in 8 species: Archae - 0; Bacteria - 7; Metazoa 
- 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes 
- 6 (source: NCBI BLink). | chr1:10317936-10318711 FORWARD 
LENGTH=678
Length=678

 Score =  429 bits (232),  Expect = 2e-119
 Identities = 402/480 (84%), Gaps = 28/480 (6%)
 Strand=Plus/Plus

Query  403  ACAACAACAAAGGTT-ACTAAACCGGA-GAAATCAATTACAACTTCTTCGAAAGAGAGTC  460
            ||||||||||| ||| || |||||||| |||| |||| ||  |||||||||||||| |||
Sbjct  214  ACAACAACAAA-GTTGACAAAACCGGAGGAAA-CAATCACGGCTTCTTCGAAAGAGTGTC  271

Query  461  TTCACGAATCAGAGACAAAGAAACCTAATG-GGATTGATTTGAGAAACTTGATCGCAAAG  519
            |||| ||| || ||||   | ||  ||| |  |  |||||||||| |||||||||| |||
Sbjct  272  TTCAAGAAACAAAGAC---G-AA--TAA-GAAGCCTGATTTGAGAGACTTGATCGCCAAG  324

Query  520  GCGCAAGATAAAATCCAAAACAAACGGCAGATCGACCATCGAAGAG-ATGACATCACAAG  578
            || ||||| ||||||||||||||| || ||||  | |||||||||| || ||||||||||
Sbjct  325  GCACAAGAAAAAATCCAAAACAAAAGGGAGATTAATCATCGAAGAGAAT-ACATCACAAG  383

Query  579  GCAGAGAATAGCTGCACGCTTAGCTCTAAATCAAATGGTAGCAACCATTAGTTTTGACGA  638
             ||||| ||||||||||||||||||||||| || |||||||||||| |||| ||||||||
Sbjct  384  ACAGAGGATAGCTGCACGCTTAGCTCTAAACCAGATGGTAGCAACCGTTAGCTTTGACGA  443

Query  639  TCATCTCAACTATCACAGAGAACTGGAACAGCTTGGCCACACATTCATTCAAGAGGAAGT  698
            ||||||||||||||| |||||| ||||||||| |||| ||||||| ||||||||  ||||
Sbjct  444  TCATCTCAACTATCATAGAGAAATGGAACAGCGTGGCTACACATTTATTCAAGATCAAGT  503

Query  699  TGATCACTTGAGCATGTTCAATTTATGGTCAAGAAGCGACTACAATGGTATCACTAACTC  758
            |||| |||||| |||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct  504  TGATAACTTGAACATGTTCAGTTTATGGTCAAGAAGCGATTACAATGGTATCACTAACTC  563

Query  759  TGTCTTGGAAAAGAACAAAACGCCA-TG-GC-CTGATGAAGATTCAACGAGAAAGAAACA  815
            ||||||||||| || ||| ||| || || |  |||||||||||||| |||||||||| ||
Sbjct  564  TGTCTTGGAAACGAGCAATACGACAATGCGGTCTGATGAAGATTCATCGAGAAAGAAGCA  623

Query  816  TCGTCAGAGCTCAACAAAAGGAAATAGTATGGAGCAGCATTCCCTGCAGATAACAAAGAA  875
              | ||||  ||| |||||  ||| || | | | || |||||||| |||||  |||||||
Sbjct  624  --G-CAGA--TCATCAAAA--AAA-AG-A-GCAACA-CATTCCCTACAGATGTCAAAGAA  672



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 45763307917


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5