BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg336095
Length=660
Score E
Sequences producing significant alignments: (Bits) Value
AT1G29962.1 | Symbols: AGL64 | AGAMOUS-like 64 | chr1:10496730-... 719 0.0
AT1G28450.1 | Symbols: AGL58 | AGAMOUS-like 58 | chr1:10003966-... 625 2e-178
AT1G28460.1 | Symbols: AGL59 | AGAMOUS-like 59 | chr1:10006230-... 595 1e-169
AT1G54760.1 | Symbols: AGL85 | AGAMOUS-like 85 | chr1:20433912-... 579 1e-164
> AT1G29962.1 | Symbols: AGL64 | AGAMOUS-like 64 | chr1:10496730-10497287
FORWARD LENGTH=558
Length=558
Score = 719 bits (389), Expect = 0.0
Identities = 490/539 (91%), Gaps = 5/539 (1%)
Strand=Plus/Plus
Query 1 ATGAATCCCAAGAAAACCAAAGGAAAGCAAAAGATTACCATCAAGAAAATTGAAAAAGAC 60
||||| |||||||||||||||||||| |||| ||||| ||||||||||||||||||||||
Sbjct 1 ATGAAACCCAAGAAAACCAAAGGAAAACAAAGGATTAACATCAAGAAAATTGAAAAAGAC 60
Query 61 GAAGACAGATTGGTCACATTGTCTAAGCGTCGAAATGGTATCTACACTAAGCTCAGCGAG 120
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 61 GAAGACAGATTGGTCACATTGTCTAAGCGTCGAAATGGTATCTACACTAAACTCAGTGAG 120
Query 121 CTTTCCATTCTCTGCGGCGCTGAAGTTGCGTTTCTCGGGTACTCTTGCTCCGGAAAGCCT 180
|||||||||||||| || ||||||||||||||||||||||| |||||||| ||||| ||
Sbjct 121 CTTTCCATTCTCTGTGGTGCTGAAGTTGCGTTTCTCGGGTATTCTTGCTCTGGAAAACCA 180
Query 181 TACACATTCGGCAGCCCATCCTTCCAAGCCGTGGCAGAGCGGTTTCTCAACGGCGAGTCC 240
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 181 TACACATTCGGCAGTCCGTCCTTCCAAGCCGTGGCAGAGCGGTTTCTCAACGGCGAGGCC 240
Query 241 TCCTCGTCTTCTTCATC---GTTGCAACGATCGGTCATGAATGCTCACCAGCAAGCGAAG 297
|| |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 241 TCGTCGTCTTCTTCATCATCGTTGCAACGATCGGTCATGAATGCTCATCAGCAAGCGAAG 300
Query 298 ATTCAAGAGCTTTGCAAAGTATACAACAGAATGGTGGAGAAGGCAAAGGCGGAAGAAGTC 357
|||||||||||||||||||||||||| ||| |||||||| || || || ||||||||||
Sbjct 301 ATTCAAGAGCTTTGCAAAGTATACAATAGATTGGTGGAGGAGATAACGGTGGAAGAAGTC 360
Query 358 AAAGTAAAGAAGGCGGCTGCATTGGCGGAGAAGATGCCCTTGAATGAGGATGCGTGGTGG 417
||| |||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct 361 AAATTAAAGAAGACGGCTGCATTGGCGGAGATGATGCCCATGAATGAGGATGCGTGGTGG 420
Query 418 AAAGTGGATCCAAAGGAGGTGAAGGATCATGAAGAGGCGAAGAAGAT-ACTGGAAAAGTG 476
|||||||||||||| || |||||||||| ||||||| ||||||||| | |||| |||
Sbjct 421 AAAGTGGATCCAAATGACGTGAAGGATCGCGAAGAGGTGAAGAAGATGA-TGGAGAAGCA 479
Query 477 TGAAGGGCTCTATGAGAAACTGTGTGACGAAGCTGCTGCAAGGATCCAGAGGGGAGATG 535
| ||| |||||||||||||||||| || ||||||||| |||||||| |||| ||| |||
Sbjct 480 TCAAGAGCTCTATGAGAAACTGTGCGAGGAAGCTGCTTCAAGGATCAAGAGAGGACATG 538
> AT1G28450.1 | Symbols: AGL58 | AGAMOUS-like 58 | chr1:10003966-10004523
FORWARD LENGTH=558
Length=558
Score = 625 bits (338), Expect = 2e-178
Identities = 474/540 (88%), Gaps = 7/540 (1%)
Strand=Plus/Plus
Query 1 ATGAATCCCAAGAAAACCAAAGGAAAGCAAAAGATTACCATCAAGAAAATTGAAAAAGAC 60
|||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct 1 ATGAATCCCAAGAAAACCAAAGGAAAACAAAAGATTAACATCAAGAAAATTGAAAAAGAC 60
Query 61 GAAGACAGATTGGTCACATTGTCTAAGCGTCGAAATGGTATCTACACTAAGCTCAGCGAG 120
|||||||||| |||||||||||||||||||| ||||| ||||||||||| | ||| |||
Sbjct 61 GAAGACAGATCGGTCACATTGTCTAAGCGTCTAAATGCTATCTACACTATGATCATTGAG 120
Query 121 CTTTCCATTCTCTGCGGCGCTGAAGTTGCGTTTCTCGGGTACTCTTGCTCCGGAAAGCCT 180
|||||||||||||| || | ||||||||||||| ||||||| |||||||| ||||| ||
Sbjct 121 CTTTCCATTCTCTGTGGTGTTGAAGTTGCGTTTATCGGGTATTCTTGCTCTGGAAAACCA 180
Query 181 TACACATTCGGCAGCCCATCCTTCCAAGCCGTGGCAGAGCGGTTTCTCAACGGCGAGTCC 240
|||||||||||||| || |||||||||||||||| ||||||||||||||||||||| ||
Sbjct 181 TACACATTCGGCAGTCCGTCCTTCCAAGCCGTGGTGGAGCGGTTTCTCAACGGCGAGGCC 240
Query 241 TCCTCGTCTTCTTCATC---GTTGCAACGATCGGTCATGAATGCTCACCAGCAAGCGAAG 297
|| |||||||||||||| ||||||||||||||||| |||||||||| |||||||||||
Sbjct 241 TCGTCGTCTTCTTCATCATCGTTGCAACGATCGGTCAAGAATGCTCACAAGCAAGCGAAG 300
Query 298 ATTCAAGAGCTTTGCAAA-GTATACAACAGAATGGTGGAGAAGGCAAAGGCGGAAGAAGT 356
|||||||||||||||||| | |||||| ||| |||||||| || ||||| ||| |||||
Sbjct 301 ATTCAAGAGCTTTGCAAAAG-ATACAATAGATTGGTGGAGGAGTTAAAGGTGGACGAAGT 359
Query 357 CAAAGTAAAGAAGGCGGCTGCATTGGCGGAGAAGATGCCCTTGAATGAGGATGCGTGGTG 416
|||||| |||||||| |||||||||||||||| || | || ||||| |||||||||||||
Sbjct 360 CAAAGTCAAGAAGGCAGCTGCATTGGCGGAGACGAGGGCCGTGAATAAGGATGCGTGGTG 419
Query 417 GAAAGTGGATCCAAAGGAGGTGAAGGATCATGAAGAGGCGAAGAAGAT-ACTGGAAAAGT 475
||||| |||||||| || ||||||||||| ||| ||||||||||||| | |||| ||||
Sbjct 420 GAAAGCAGATCCAAATGACGTGAAGGATCACGAAAAGGCGAAGAAGATGA-TGGAGAAGT 478
Query 476 GTGAAGGGCTCTATGAGAAACTGTGTGACGAAGCTGCTGCAAGGATCCAGAGGGGAGATG 535
| ||| |||| | ||||||||| |||| |||| |||| ||||||| |||| ||| |||
Sbjct 479 ATCAAGAGCTCAAAGAGAAACTGCGTGAGGAAGTTGCTTTAAGGATCAAGAGAGGACATG 538
> AT1G28460.1 | Symbols: AGL59 | AGAMOUS-like 59 | chr1:10006230-10006778
FORWARD LENGTH=549
Length=549
Score = 595 bits (322), Expect = 1e-169
Identities = 468/538 (87%), Gaps = 12/538 (2%)
Strand=Plus/Plus
Query 1 ATGAATCCCAAGAAAACCAAAGGAAAGCAAAAGATTACCATCAAGAAAATTGAAAAAGAC 60
|||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 1 ATGAATCCCAAGAAAACCAAAGGAAAACAAAAGATTAACATCAAGAAAATTGAAAAAGAT 60
Query 61 GAAGACAGATTGGTCACATTGTCTAAGCGTCGAAATGGTATCTACACTAAGCTCAGCGAG 120
|||| ||||| ||||||||| |||||||||| |||||||||||||||||| |||| |||
Sbjct 61 GAAGGCAGATCGGTCACATTCTCTAAGCGTCTAAATGGTATCTACACTAAAATCAGTGAG 120
Query 121 CTTTCCATTCTCTGCGGCGCTGAAGTTGCGTTTCTCGGGTACTCTTGCTCCGGAAAGCCT 180
||||| |||||||| || | ||||||||||||| ||||||| |||||||| ||||| ||
Sbjct 121 CTTTCTATTCTCTGTGGTGTTGAAGTTGCGTTTATCGGGTATTCTTGCTCTGGAAAACCA 180
Query 181 TACACATTCGGCAGCCCATCCTTCCAAGCCGTGGCAGAGCGGTTTCTCAACGGCGAGT-C 239
||||| || ||||| |||||||||||||||||||| |||||||||||||||||||| | |
Sbjct 181 TACACTTTTGGCAGTCCATCCTTCCAAGCCGTGGCGGAGCGGTTTCTCAACGGCGA-TGC 239
Query 240 CTCCTCGTCTTCTTCATCGTTGCAACGATCGGTCATGAATGCTCACCAGCAAGCGAAGAT 299
||| |||||||||||| | || | || |||||||||||||||| |||||||||||||
Sbjct 240 CTCGTCGTCTTCTTCA----T-CATC-ATTGGTCATGAATGCTCACAAGCAAGCGAAGAT 293
Query 300 TCAAGAGCTTTGCAAAGTATACAACAGAATGGTGGAGAAGGCAAAGGCGGAAGAAGTCAA 359
|||||||||||||||| |||||| ||| |||||||| || ||||| ||| ||||||||
Sbjct 294 TCAAGAGCTTTGCAAAAAATACAATAGATTGGTGGAGGAGTTAAAGGTGGACGAAGTCAA 353
Query 360 AGTAAAGAAGGCGGCTGCATTGGCGGAGAAGATGCCCTTGAATGAGGATGCGTGGTGGAA 419
||| |||||||| |||||||||||||||| || | | ||||| |||||| |||||||||
Sbjct 354 AGTCAAGAAGGCAGCTGCATTGGCGGAGACGAGGGTCGTGAATAAGGATGTGTGGTGGAA 413
Query 420 AGTGGATCCAAAGGAGGTGAAGGATCATGAAGAGGCGAAGAAGAT-ACTGGAAAAGTGTG 478
|||||||||||| || ||||||||||| ||| ||||||||||||| | |||| |||| |
Sbjct 414 AGTGGATCCAAATGACGTGAAGGATCACGAAAAGGCGAAGAAGATGA-TGGAGAAGTATC 472
Query 479 AAGGGCTCTATGAGAAACTGTGTGA-CGAAGCTGCTGCAAGGATCCAGAGGGGAGATG 535
||| ||||||||| ||||||||||| | |||||||| |||||||| |||| ||| |||
Sbjct 473 AAGAGCTCTATGATAAACTGTGTGAGC-AAGCTGCTTCAAGGATCAAGAGAGGACATG 529
> AT1G54760.1 | Symbols: AGL85 | AGAMOUS-like 85 | chr1:20433912-20434397
FORWARD LENGTH=486
Length=486
Score = 579 bits (313), Expect = 1e-164
Identities = 427/479 (89%), Gaps = 19/479 (4%)
Strand=Plus/Plus
Query 61 GAAGACAGATTGGTCACATTGTCTAAGCGTCGAAATGGTATCTACACTAAGCTCAGCGAG 120
|||||||||||||||||||| ||||||||||||||||| ||||||| |||| || |||
Sbjct 3 GAAGACAGATTGGTCACATTATCTAAGCGTCGAAATGGAATCTACAATAAG--CAATGAG 60
Query 121 CTTTCCATTCTCTGCGGCGCTGAAGTTGCGTTTCTCGGGTACTCTTGCTCCGGAAAGCCT 180
|||||||||||||| || |||||||||||||||||||| ||||||||||| ||||| ||
Sbjct 61 CTTTCCATTCTCTGTGGTGCTGAAGTTGCGTTTCTCGGATACTCTTGCTCAGGAAAACCA 120
Query 181 TACACATTCGGCAGCCCATCCTTCCAAGCCGTGGCAGAGCGGTTTCTCAA-CGGCGAGTC 239
|||||||||||||| || || || ||||||||||||||||| |||||||| | | |||
Sbjct 121 TACACATTCGGCAGTCCGTCTTTTCAAGCCGTGGCAGAGCGATTTCTCAATC-GTGAG-- 177
Query 240 CTCCTCGTCTTCTTCATCGTTGCAACGATCGGTCATGAATGCTCACCAGCAAGCGAAGAT 299
| | || ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 178 ------G-CCTCATCATCGTTGCAACGATCGGTCATGAATGCTCACCAACAAGCGAAGAT 230
Query 300 TCAAGAGCTTTGCAAAGTATACAACAGAATGGTGGAGAAGGCAAAGGCGGAAGAAGTCAA 359
|||||||||||||||||||||||| |||||||||||| |||||||| ||||||||| |||
Sbjct 231 TCAAGAGCTTTGCAAAGTATACAATAGAATGGTGGAGGAGGCAAAGACGGAAGAAGCCAA 290
Query 360 AGTAAAGAAGGCGGCTGCATTGGCGGAGA-AGATGCCC-TTGAATGAGGATGCGTGGTGG 417
|||||||||||| |||||||| ||||||| | |||||| | | |||||||||||||||||
Sbjct 291 AGTAAAGAAGGCAGCTGCATTAGCGGAGACA-ATGCCCGTAG-ATGAGGATGCGTGGTGG 348
Query 418 AAAGTGGATCCAAAGGAGGTG-AAGGATCATGAAGAGGCGAAGAAGATACTGGAAAAGTG 476
||||||||||||||||||||| ||| |||| |||||||||||||||||| ||||||||||
Sbjct 349 AAAGTGGATCCAAAGGAGGTGGAAG-ATCACGAAGAGGCGAAGAAGATAATGGAAAAGTG 407
Query 477 TGAAGGGCTCTATGAGAAACTGTGTGACGAAGCTGCTGCAAGGATCCAGAGGGGAGATG 535
||||||||||||||||||||||||| | |||||||||||||||||||| || |||||||
Sbjct 408 TGAAGGGCTCTATGAGAAACTGTGTAATGAAGCTGCTGCAAGGATCCAAAGAGGAGATG 466
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31898683345
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5