BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg336171
Length=2325
Score E
Sequences producing significant alignments: (Bits) Value
AT1G30680.1 | Symbols: | toprim domain-containing protein | ch... 1768 0.0
AT1G30660.1 | Symbols: | nucleic acid binding;nucleic acid bin... 383 5e-105
> AT1G30680.1 | Symbols: | toprim domain-containing protein |
chr1:10881597-10886425 FORWARD LENGTH=2563
Length=2563
Score = 1768 bits (957), Expect = 0.0
Identities = 1064/1117 (95%), Gaps = 2/1117 (0%)
Strand=Plus/Plus
Query 1210 AAGGCGTCTCGAATTGTTATTGCTACTGATGGAGATGGACCTGGTCAAGCTCTGGCGGAA 1269
||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 1083 AAGGCGTCTCGAATTGTTATTGCTACTGACGGAGATGGACCTGGTCAAGCTATGGCGGAA 1142
Query 1270 GAAATTGCACGGCGTTTGGGCAAAGAAAGATGTTGGCGTGTCAAGTGGCCGGAGAAAAGT 1329
|||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 1143 GAAATTGCACGGCGTTTGGGTAAAGAAAGATGTTGGCGTGTCAAGTGGCCGAAGAAAAGT 1202
Query 1330 GAGGATGAACATTTCAAAGATGCAAACGAGGTGCTTATGTCTAAGGGACCTCATTTACTC 1389
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1203 GAGGATGAACATTTTAAAGATGCAAACGAGGTTCTTATGTCTAAGGGACCTCATTTACTC 1262
Query 1390 AAGGAAGCTATTCTAAATGCTGAGCCATATCCCATACGAGGATTATTCCCCTTCAAAGAT 1449
|||||||||||| || |||||||||||||||| |||| |||||||||| |||||||||||
Sbjct 1263 AAGGAAGCTATTTTAGATGCTGAGCCATATCCTATACTAGGATTATTCTCCTTCAAAGAT 1322
Query 1450 TTCTTTGATGAAATTGATGCCTACTATCATAGAACACATGGGCACGAGTATGGTGTTTCA 1509
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1323 TTCTTTGATGAAATTGATGCCTACTATGATAGAACACATGGGCACGAGTATGGTGTTTCA 1382
Query 1510 ACAGGGTGGAAAAATTTGGACAACTTCTATAGTGTTGTGCCAGGGGAGTTGACAGTTGTG 1569
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1383 ACAGGGTGGAAAAATTTGGACAACTTGTATAGTGTTGTGCCAGGGGAGTTGACAGTTGTG 1442
Query 1570 ACAGGGATCCCTAATTCTGGAAAGAGTGAATGGATTGATGCTATGTTGTGCAATCTTAAC 1629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1443 ACAGGGATCCCTAATTCTGGAAAGAGTGAATGGATTGATGCTATGTTGTGCAATCTTAAC 1502
Query 1630 CATAGTGTTGGCTGGAAATTTGCTCTCTGTTCAATGGAGAATAAGGTACGAGATCATGGC 1689
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 1503 CATAGTGTTGGCTGGAAATTTGCACTCTGTTCAATGGAGAATAAGGTACGAGATCATGCC 1562
Query 1690 AGGAAACTCTTGGAAAAACATGTAAAGAAACCATTCTTTGATGCAGATTATGGGAGATCT 1749
|||||||| |||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 1563 AGGAAACTTTTGGAAAAACATATAAAGAAACCATTCTTTGATGCAGACTATGGGAGATCT 1622
Query 1750 GTCCAACGGATGAACGTTGAGGAGTTGGATGAAGGGAAACAGTGGTTGAACGACACCTTC 1809
||||||||||||| |||||||||| ||||||||||||| |||||||||| |||||||||
Sbjct 1623 GTCCAACGGATGAGCGTTGAGGAGAAGGATGAAGGGAAAAAGTGGTTGAATGACACCTTC 1682
Query 1810 TCTCTCATAAGATGTGAGATGGATTCACTTCCAAGTATTGAATGGGTTCTGGAACGTGCG 1869
| || |||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1683 TATCCCATAAGATGTGAGATGGATTCACTTCCAAGTATTGATTGGGTTCTGGAACGTGCA 1742
Query 1870 AAAGCAGCTGTTCTTCGGTACGGGATTCGAGGACTTGTTATAGATCCTTACAATGAGCTC 1929
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1743 AAAGCAGCTGTTCTTCGGTATGGGATTCGAGGACTTGTTATAGATCCTTACAATGAGCTC 1802
Query 1930 GATCATCAACGTACTTCACGCCAGACGGAGACAGAGTATGTTAGCCAGATGCTTACAAAG 1989
||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1803 GATCATCAACGTACTCCACGCCAGACGGAGACAGAGTATGTCAGCCAGATGCTTACAAAA 1862
Query 1990 ATCAAACGCTTTTCCCAACACCACTCCTGCCATGTCTGGTTTGTTGCTCATCCAAAACAG 2049
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1863 ATCAAACGCTTTTCCCAACACCACTCCTGCCATGTCTGGTTTGTCGCTCATCCAAAACAG 1922
Query 2050 TTGCAACATTGGGACGGTGGTGCACCAAACCTTTACGATATTAGTGGCAGCGCACATTTT 2109
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1923 TTGCAACATTGGGATGGCGGTGCACCAAACCTTTACGATATTAGTGGCAGCGCACATTTT 1982
Query 2110 ATAAACAAATGTGACAATGGTATAATAGTTCACAGAAACCGTGATGAAAAAGCTGGACCT 2169
||||||||||||||||||||||| ||||||||||||||||| || ||||| |||||||||
Sbjct 1983 ATAAACAAATGTGACAATGGTATTATAGTTCACAGAAACCGCGACGAAAATGCTGGACCT 2042
Query 2170 CTTGATCTTGTGCAAATTGGTGTGAGGAAAGTACGAAACAAGGTTGCAGGACAAATTGGT 2229
|||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2043 CTTGATCTAGTTCAAATTGGTGTGAGGAAAGTACGAAACAAGGTGGCAGGACAAATTGGT 2102
Query 2230 GATGCATATTTGTGTTATGACAGGGCAACTGGTTTGTACTCGGATTCTCCAGTGACGCCT 2289
|||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 2103 GATGCATACTTGTGTTATGACAGGACAACTGGTTCCTACTCGGATTCTCCAGTGACGCCT 2162
Query 2290 GAGA-TACCTGAGAGGAGACCAAGCAACCGGTACTGA 2325
| || | || ||||||||| || ||| |||||||||
Sbjct 2163 G-GAATGCCAGAGAGGAGATCACCCAAGCGGTACTGA 2198
Score = 512 bits (277), Expect = 6e-144
Identities = 287/292 (98%), Gaps = 0/292 (0%)
Strand=Plus/Plus
Query 594 GTGTGAAGGTGGAAACTCTGGAGAAAAAAGCTTGTCTCTTTTCATAGCCCCTGATGGTTC 653
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 482 GTGTGAAGGTGGAAACTCTGGAGAAAAAAGCTTGTCTCTTTTTATAGCCCCTGATGGTTC 541
Query 654 ATCAGCTACATGGAATTGCTTTAGGGGGAAGTGTGGGTTAAAAGGTGGAGTACGGGCGGA 713
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 542 ATCAGCTACATGGAATTGCTTTAGGGGGAAGTGTGGGTTAAAAGGTGGAGTTCGGGCGGA 601
Query 714 TGGTAGGTTGGCATCTGCTGATCCTATAGAGAAGGTTGAAAGAAAAATTACGGTGGAGGC 773
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 602 TGGTGGGTTGGCATCTGCTGATCCTATAGAGAAGGTTGAAAGAAAAATTACGGTGGAGGG 661
Query 774 TATAGAGCTAGAACCGCTCTGTGATGAGATTCAAGATTATTTCGCTGCAAGAGCGATTTC 833
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 662 TATAGAGCTAGAACCTCTCTGTGATGAGATTCAAGATTATTTCGCTGCAAGAGCGATTTC 721
Query 834 ACGGAAAACACTCGAGAGAAATCGGGTTATGCAGAAAAGAATAGGTGACGAG 885
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 722 ACGGAAAACACTCGAGAGAAATCGGGTTATGCAGAAAAGAATAGGTGACGAG 773
Score = 460 bits (249), Expect = 2e-128
Identities = 299/322 (93%), Gaps = 7/322 (2%)
Strand=Plus/Plus
Query 142 tcttctt-cttcttctt-cttc-tactagtctttctccttcttattcttcAAGTAGACAA 198
||||||| |||||| || | || ||| || ||||||||||||||||||||||||||||
Sbjct 164 TCTTCTTCCTTCTT-TTGCCTCATACCCTTC-TTCTCCTTCTTATTCTTCAAGTAGACAA 221
Query 199 GTATCTTCCGTTTCAAGACGACTTCGTCCGGTTTTGGCCTCGAGACCTGTGTCCAAAAAC 258
|||||||||||||| ||| || |||| || ||||||||||||||||||||||||||||||
Sbjct 222 GTATCTTCCGTTTCTAGAAGATTTCGACCAGTTTTGGCCTCGAGACCTGTGTCCAAAAAC 281
Query 259 AGTCCTTATTACCAAAGGACCAATGGTTTATCATCTTACAATTCAATCCCCAGAGTCCCA 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 282 AGTCCTTATTACCAAAGGACCAATGGTTTATCATCTTACAATTCAATCCCCAGAGTCCCA 341
Query 319 ACTCCTGTTGACACTGAAGAAGAAGCAGACAAGAGGGCTGTTCTATCTAGATTAGTGACT 378
||||||||||| ||||||| ||||||||| ||||||| ||||||||||||||||||||||
Sbjct 342 ACTCCTGTTGATACTGAAGTAGAAGCAGATAAGAGGGTTGTTCTATCTAGATTAGTGACT 401
Query 379 TTGAGGCGTAAATTGGCGGAACAAGGAATTGATGCTGAAAACTGCCCCCCAGGACAGTC- 437
||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |
Sbjct 402 TTGAGGCGTAAATTGGCGGAACAGGGAGTTGATGCTGAAAACTGCCCCCCAGGACAA-CA 460
Query 438 TAGTGGCTTGATATGTCCGACG 459
||||||||||||||||||||||
Sbjct 461 TAGTGGCTTGATATGTCCGACG 482
Score = 409 bits (221), Expect = 7e-113
Identities = 251/266 (94%), Gaps = 0/266 (0%)
Strand=Plus/Plus
Query 948 GATTGTTATTGCGTTTACTTATTGGCAAAGAGGGGAGCTTGTGAGTTGCAAGTACCGGTC 1007
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 773 GATTGTAATTGCGTTTACTTATTGGCAAAGAGGGGAGCTTGTGAGTTGCAAGTACCGGTC 832
Query 1008 TCTAACTAAGAAGTTCTTTCAGGAAAGGAATACACGGAGGATCTTATATGGTCTTGATGA 1067
||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 833 TCTAACTAAGATGTTCTTTCAGGAAAGGAAGACACGGAGGATCTTATATGGTCTTGATGA 892
Query 1068 CATAGAAAAAACATCTGAAATCATTATAGTTGAAGGGGAAATAGATAAACTTGCAATGGA 1127
||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 893 CATAGAAAAAACATCTGAAGTCATTATAGTTGAAGGGGAGATAGATAAACTTGCAATGGA 952
Query 1128 AGAGGCTGGTTTTCGCAATTGTGTGTCTGTTCCTGATGGAGCTCCAGCGTCGGTTTCTTC 1187
||| |||||||||| ||||||||| || ||||||||||||||||||||| |||||||||
Sbjct 953 AGAAGCTGGTTTTCTCAATTGTGTATCCGTTCCTGATGGAGCTCCAGCGAAGGTTTCTTC 1012
Query 1188 AAAGGAAACCCCATCTGAGGACAAGG 1213
||||||| |||||| || |||||||
Sbjct 1013 GAAGGAAATCCCATCGGAAGACAAGG 1038
Score = 215 bits (116), Expect = 2e-54
Identities = 134/143 (94%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 1 ATGCGATTTTTGCTTCGTTTACCACAAACCCATCTGCGGAAACTCTCTTGCTCGATGTCT 60
|||||||||||||||||||||||||||| ||| | ||||||||||| ||||||||||||
Sbjct 69 ATGCGATTTTTGCTTCGTTTACCACAAATTCATTTTCGGAAACTCTCGTGCTCGATGTCT 128
Query 61 CTACTCATGGGTTCGAAGCAATTCCTCGAATTTTGtcttcttccttcttttgccgcatac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 129 GTACTCATGGGTTCGAAGCAATTCCTCGAATTTTGTCTTCTTCCTTCTTTTGCCTCATAC 188
Query 121 ccttcttcttcttcttcttcttc 143
||||||||| |||||| ||||||
Sbjct 189 CCTTCTTCTCCTTCTTATTCTTC 211
> AT1G30660.1 | Symbols: | nucleic acid binding;nucleic acid binding
| chr1:10876853-10879017 FORWARD LENGTH=1014
Length=1014
Score = 383 bits (207), Expect = 5e-105
Identities = 241/258 (93%), Gaps = 0/258 (0%)
Strand=Plus/Plus
Query 948 GATTGTTATTGCGTTTACTTATTGGCAAAGAGGGGAGCTTGTGAGTTGCAAGTACCGGTC 1007
|||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 480 GATTGTGATTGCTTTTACGTATTGGCAAAGAGGGGAGCTTGTGAGTTGCAAGTACCGATC 539
Query 1008 TCTAACTAAGAAGTTCTTTCAGGAAAGGAATACACGGAGGATCTTATATGGTCTTGATGA 1067
|||||||||||||||| ||||||||||||||||||||| |||||| ||||| ||||||||
Sbjct 540 TCTAACTAAGAAGTTCGTTCAGGAAAGGAATACACGGAAGATCTTGTATGGGCTTGATGA 599
Query 1068 CATAGAAAAAACATCTGAAATCATTATAGTTGAAGGGGAAATAGATAAACTTGCAATGGA 1127
||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 600 CATAGAAGAAACATCTGAAATCATTATAGTTGAAGGGGAACCAGATAAACTTGCAATGGA 659
Query 1128 AGAGGCTGGTTTTCGCAATTGTGTGTCTGTTCCTGATGGAGCTCCAGCGTCGGTTTCTTC 1187
||||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 660 AGAGGCTGGTTTTTTCAATTGTGTGTCTGTTCCTGATGGAGCTCCAGAGACGGTTTCTTC 719
Query 1188 AAAGGAAACCCCATCTGA 1205
|||||||| ||||||||
Sbjct 720 AAAGGAAATTCCATCTGA 737
Score = 355 bits (192), Expect = 1e-96
Identities = 261/294 (89%), Gaps = 5/294 (2%)
Strand=Plus/Plus
Query 593 AGTGTGAAGGTGGAAACTCTGGAGAAAAAAGCTTGTCTCTTTTCATAGCCCCTGATGGTT 652
||||||||| |||| |||||||||||||||||||| |||||| |||| |||||||||||
Sbjct 191 AGTGTGAAGTTGGAGACTCTGGAGAAAAAAGCTTGACTCTTTACATATACCCTGATGGTT 250
Query 653 CATCAGCTACATGGAATTGCTTTAGGGGGAAGTGTGGGTTAAAAGGTGGAGTACGGGCGG 712
| ||||||| ||||| |||| ||| ||||||||||||||||||||| | ||| || ||
Sbjct 251 CGTCAGCTAAATGGACTTGC---AGGAGGAAGTGTGGGTTAAAAGGTGTACTACAGGTGG 307
Query 713 ATGGTAGGTTGGCATCTGCTGATCCTATAGAGAAGGTTGAAAGAAAAATTACGGTGGAG- 771
|||||| ||||| |||| ||||| |||| ||||||||||||||||||||||||||||
Sbjct 308 ATGGTAAGTTGGTATCTAAAGATCCAATAGGGAAGGTTGAAAGAAAAATTACGGTGGAGA 367
Query 772 GCTATAGAGCTAGAACCGCTCTGTGATGAGATTCAAGATTATTTCGCTGCAAGAGCGATT 831
| |||| |||||||||| |||||||||||||||||||||| ||| |||||||||||||||
Sbjct 368 G-TATAAAGCTAGAACCTCTCTGTGATGAGATTCAAGATTTTTTTGCTGCAAGAGCGATT 426
Query 832 TCACGGAAAACACTCGAGAGAAATCGGGTTATGCAGAAAAGAATAGGTGACGAG 885
||| |||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct 427 TCAGGGAAAACACTCGAGAGAAATCGAGTTATGCAGAAAAGAATAGATGACGAG 480
Score = 331 bits (179), Expect = 2e-89
Identities = 202/213 (95%), Gaps = 1/213 (0%)
Strand=Plus/Plus
Query 1210 AAGGCGTCTCGAATTGTTATTGCTACTGATGGAGATGGACCTGGTCAAGCTCTGGCGGAA 1269
||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 790 AAGGCGTCTCGGATTGTTATTGCTACTGACGGAGATGGACCTGGTCAAGCTCTAGCGGAA 849
Query 1270 GAAATTGCACGGCGTTTGGGCAAAGAAAGATGTTGGCGTGTCAAGTGGCCGGAGAAAAGT 1329
||| |||||||||||||||| |||||||||||||||| |||||| |||||| ||||||||
Sbjct 850 GAACTTGCACGGCGTTTGGGGAAAGAAAGATGTTGGCTTGTCAAATGGCCGAAGAAAAGT 909
Query 1330 GAGGATGAACATTTCAAAGATGCAAACGAGGTGCTTATGTCTAAGGGACCTCATTTACTC 1389
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 910 GAAGATGAACATTTCAAAGATGCAAACGAGGTGCTTATGTCTAAGGGACCTCATTTACTC 969
Query 1390 AAGGAAGCTATTCTAAATGCTGAGCCATATCCC 1422
|||||||||||||||||||||||||| || |||
Sbjct 970 AAGGAAGCTATTCTAAATGCTGAGCCTTA-CCC 1001
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 115411052955
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5